Wall clock time and date at job start Tue Mar 31 2020 20:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99767 * 2 1 4 4 H 1.09006 * 109.47317 * 0.02562 * 3 2 1 5 5 C 1.53006 * 109.47351 * 240.00378 * 3 2 1 6 6 C 1.52992 * 109.47325 * 64.99837 * 5 3 2 7 7 C 1.52999 * 109.47312 * 120.00060 * 3 2 1 8 8 C 1.50694 * 109.47376 * 184.99910 * 7 3 2 9 9 O 1.21286 * 120.00193 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00208 * 179.97438 * 8 7 3 11 11 C 1.46500 * 120.00469 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47638 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.64293 * 54.29450 * 12 11 10 14 14 C 1.54598 * 110.72126 * 291.15119 * 12 11 10 15 15 C 1.54000 * 105.13755 * 219.50117 * 14 12 11 16 16 N 1.47907 * 107.05770 * 358.77661 * 15 14 12 17 17 C 1.46888 * 110.99915 * 145.84241 * 16 15 14 18 18 C 1.50706 * 109.47426 * 183.37095 * 17 16 15 19 19 O 1.21303 * 119.99448 * 353.87276 * 18 17 16 20 20 N 1.34770 * 120.00273 * 173.86859 * 18 17 16 21 21 C 1.37104 * 119.99694 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00064 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99803 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99564 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00060 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47099 * 89.99685 * 25 23 21 27 27 H 1.48497 * 109.47432 * 210.00117 * 25 23 21 28 28 H 1.48500 * 109.47058 * 330.00060 * 25 23 21 29 29 C 1.49011 * 105.87159 * 25.33015 * 16 15 14 30 30 H 1.08000 * 120.00247 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99911 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00247 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.47392 * 185.00461 * 5 3 2 34 34 H 1.09006 * 109.46350 * 304.99762 * 5 3 2 35 35 H 1.09008 * 109.47548 * 300.00617 * 6 5 3 36 36 H 1.08996 * 109.47280 * 60.00076 * 6 5 3 37 37 H 1.08993 * 109.47435 * 180.02562 * 6 5 3 38 38 H 1.09002 * 109.47087 * 65.00115 * 7 3 2 39 39 H 1.08997 * 109.46851 * 305.00082 * 7 3 2 40 40 H 0.97005 * 119.99918 * 0.02562 * 10 8 7 41 41 H 1.09002 * 109.46740 * 59.99986 * 11 10 8 42 42 H 1.08997 * 109.47115 * 300.00004 * 11 10 8 43 43 H 1.08990 * 110.31272 * 338.41664 * 14 12 11 44 44 H 1.09003 * 110.31070 * 100.49099 * 14 12 11 45 45 H 1.08998 * 109.91488 * 118.12634 * 15 14 12 46 46 H 1.08997 * 109.91988 * 239.22743 * 15 14 12 47 47 H 1.08998 * 109.47530 * 303.37121 * 17 16 15 48 48 H 1.09004 * 109.47614 * 63.37283 * 17 16 15 49 49 H 0.96995 * 120.00513 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99229 * 179.97438 * 24 23 21 51 51 H 1.08999 * 110.86710 * 202.42337 * 29 16 15 52 52 H 1.08998 * 110.68095 * 79.14510 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3862 1.2492 8 6 3.6019 2.7401 1.3127 9 8 3.3885 3.5597 0.4445 10 7 4.4274 3.0405 2.3347 11 6 5.0675 4.3569 2.3968 12 6 5.9472 4.4379 3.6460 13 1 6.6559 3.6101 3.6713 14 6 5.0799 4.4548 4.9256 15 6 5.7676 5.4637 5.8642 16 7 6.9704 5.9602 5.1611 17 6 7.2298 7.3678 5.4915 18 6 8.4104 7.8614 4.6954 19 8 9.0481 7.0873 4.0131 20 7 8.7575 9.1628 4.7413 21 6 9.8319 9.6117 4.0175 22 1 10.3997 8.9224 3.4101 23 6 10.1901 10.9534 4.0653 24 7 11.2196 11.3836 3.3710 25 14 9.2084 12.1454 5.1163 26 1 9.7910 12.1974 6.4812 27 1 9.2556 13.4983 4.5060 28 1 7.7979 11.6879 5.1974 29 6 6.6890 5.7968 3.7070 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 3.5539 2.2879 -1.2056 34 1 3.5906 0.5106 -1.2952 35 1 1.4454 0.5291 -2.5390 36 1 1.4089 2.3064 -2.4494 37 1 2.6830 1.4882 -3.3853 38 1 3.7085 0.6114 1.2055 39 1 2.3278 1.2396 2.1369 40 1 4.5978 2.3852 3.0293 41 1 4.3018 5.1314 2.4403 42 1 5.6830 4.5038 1.5093 43 1 4.0676 4.7845 4.6923 44 1 5.0592 3.4650 5.3817 45 1 5.0928 6.2930 6.0764 46 1 6.0539 4.9710 6.7933 47 1 6.3518 7.9659 5.2479 48 1 7.4465 7.4573 6.5560 49 1 8.2478 9.7818 5.2871 50 1 11.4694 12.3203 3.4042 51 1 7.6156 5.7553 3.1344 52 1 6.0483 6.6013 3.3461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228425.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:33 Heat of formation + Delta-G solvation = -59.036275 kcal Electronic energy + Delta-G solvation = -28724.248815 eV Core-core repulsion = 24723.756692 eV Total energy + Delta-G solvation = -4000.492123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26643 -39.33387 -37.87138 -37.03335 -35.09192 -33.96009 -32.28327 -32.09977 -31.63768 -30.70399 -29.32627 -27.25500 -25.74278 -24.29939 -23.67862 -22.11865 -21.29790 -20.47106 -20.22868 -19.91497 -19.37030 -18.28983 -17.21615 -16.65892 -16.10821 -15.73090 -15.42706 -15.29598 -15.10373 -14.99798 -14.72187 -14.54552 -14.12510 -13.87320 -13.60724 -13.54058 -13.19261 -12.99922 -12.85266 -12.78614 -12.49110 -12.32661 -12.16961 -11.92620 -11.80013 -11.52205 -11.45143 -11.35336 -11.14354 -11.10799 -11.02963 -10.92524 -10.80078 -10.65116 -10.60029 -9.98118 -9.91676 -9.68242 -9.55145 -9.23118 -8.55674 -8.20154 -8.08426 -6.31652 -3.83002 1.89724 2.45062 2.97463 3.01939 3.06338 3.14663 3.72629 3.98018 4.09848 4.32313 4.39118 4.45988 4.63605 4.66296 4.70000 4.82166 4.89543 4.94181 5.03223 5.11115 5.15593 5.19167 5.20895 5.26800 5.39253 5.42416 5.49209 5.57807 5.62786 5.64608 5.66440 5.68764 5.71674 5.76348 5.80482 5.87091 5.90820 6.02371 6.05625 6.10088 6.15935 6.25546 6.31720 6.43543 6.46044 7.05624 7.12394 7.28306 7.57734 8.03564 8.13822 8.59366 8.94553 9.41759 9.82193 10.81416 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.001795 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.796453 B =15593.367573 C =16398.614787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.082 0.918 5 C -0.123 4.123 6 C -0.148 4.148 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.535 6.535 10 N -0.729 5.729 11 C 0.128 3.872 12 C -0.106 4.106 13 H 0.090 0.910 14 C -0.125 4.125 15 C 0.033 3.967 16 N -0.493 5.493 17 C 0.034 3.966 18 C 0.451 3.549 19 O -0.560 6.560 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.048 3.952 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.092 0.908 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.111 0.889 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.716 -21.110 0.103 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.100 0.900 5 C -0.160 4.160 6 C -0.205 4.205 7 C -0.174 4.174 8 C 0.296 3.704 9 O -0.412 6.412 10 N -0.381 5.381 11 C 0.004 3.996 12 C -0.125 4.125 13 H 0.109 0.891 14 C -0.163 4.163 15 C -0.095 4.095 16 N -0.217 5.217 17 C -0.098 4.098 18 C 0.237 3.763 19 O -0.442 6.442 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.080 4.080 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.234 0.766 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.129 0.871 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.809 -21.115 -0.895 29.659 hybrid contribution -1.303 1.343 1.103 2.172 sum -22.112 -19.772 0.208 29.663 Atomic orbital electron populations 1.23869 0.95964 1.01818 1.01277 1.22931 0.95914 0.98002 0.99467 1.20165 0.96901 0.95697 0.93725 0.89995 1.21665 0.98059 1.02919 0.93350 1.21725 0.99788 1.01521 0.97484 1.21701 1.00255 0.95060 1.00424 1.20690 0.78851 0.89604 0.81241 1.90702 1.61937 1.50447 1.38147 1.46062 1.47962 1.17246 1.26816 1.21377 0.95739 0.84194 0.98279 1.22367 0.96862 1.00210 0.93075 0.89139 1.22481 0.98614 0.99724 0.95486 1.22904 0.91062 0.97424 0.98112 1.64641 1.33861 1.17298 1.05911 1.22119 0.97459 0.89156 1.01044 1.19610 0.87507 0.82767 0.86448 1.90531 1.55138 1.54540 1.44009 1.42210 1.29395 1.07616 1.43733 1.19430 1.05229 0.94689 1.23993 0.86238 1.25037 0.96634 0.96922 0.97536 1.69623 1.25855 1.16297 1.40280 0.86676 0.79994 0.81679 0.81059 1.19596 1.20173 1.19571 1.23377 1.00783 0.93808 0.90013 0.88597 0.88550 0.87399 0.89711 0.92583 0.93023 0.92806 0.92984 0.88742 0.88858 0.76614 0.91451 0.90940 0.91467 0.91131 0.93989 0.90378 0.93391 0.88983 0.79727 0.91611 0.87130 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 14.32 29.01 0.42 -0.73 16 2 C -0.15 -0.90 7.75 -36.03 -0.28 -1.18 16 3 C -0.05 -0.35 1.80 -91.77 -0.17 -0.52 16 4 H 0.08 0.76 7.60 -51.93 -0.39 0.36 16 5 C -0.12 -1.06 5.18 -26.73 -0.14 -1.20 16 6 C -0.15 -1.21 9.73 37.15 0.36 -0.85 16 7 C -0.13 -0.88 5.16 -27.89 -0.14 -1.02 16 8 C 0.51 5.00 7.51 -10.99 -0.08 4.92 16 9 O -0.54 -7.43 13.99 5.55 0.08 -7.35 16 10 N -0.73 -6.16 5.43 -60.30 -0.33 -6.49 16 11 C 0.13 1.37 5.01 -4.04 -0.02 1.35 16 12 C -0.11 -1.15 3.08 -88.76 -0.27 -1.43 16 13 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.12 -1.15 6.31 -25.37 -0.16 -1.31 16 15 C 0.03 0.38 6.70 -2.75 -0.02 0.36 16 16 N -0.49 -7.67 5.11 -231.48 -1.18 -8.86 16 17 C 0.03 0.57 5.31 -4.98 -0.03 0.54 16 18 C 0.45 10.16 7.41 -10.99 -0.08 10.08 16 19 O -0.56 -14.69 13.88 5.54 0.08 -14.61 16 20 N -0.59 -14.02 5.09 -10.96 -0.06 -14.07 16 21 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 25 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 29 C 0.05 0.73 5.05 -1.63 -0.01 0.72 16 30 H 0.10 0.58 7.83 -52.49 -0.41 0.17 16 31 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 32 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.08 0.95 5.88 -51.93 -0.31 0.64 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.38 7.38 -51.92 -0.38 0.00 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 2.30 8.40 -40.82 -0.34 1.95 16 41 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.59 7.76 -51.93 -0.40 0.18 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.72 7.99 -51.93 -0.41 0.30 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 51 H 0.11 2.07 6.45 -51.93 -0.34 1.73 16 52 H 0.04 0.64 7.93 -51.93 -0.41 0.23 16 LS Contribution 413.83 15.07 6.24 6.24 Total: -1.00 -33.79 413.83 -9.07 -42.86 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -9.08 Total: 10.53 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.87 Total: 2.04 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.79 Total: -54.37 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.15 Total: -21.96 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.79 -9.07 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228425.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.179 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds