Wall clock time and date at job start Tue Mar 31 2020 20:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99421 * 2 1 4 4 H 1.09002 * 109.47460 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.46697 * 120.00081 * 3 2 1 6 6 C 1.53000 * 109.47243 * 294.99800 * 5 3 2 7 7 C 1.53000 * 109.47067 * 239.99696 * 3 2 1 8 8 C 1.50702 * 109.46860 * 65.00556 * 7 3 2 9 9 O 1.21278 * 120.00109 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00086 * 180.02562 * 8 7 3 11 11 C 1.46494 * 120.00336 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47334 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.78832 * 303.20296 * 12 11 10 14 14 C 1.54595 * 110.72583 * 66.45262 * 12 11 10 15 15 C 1.53993 * 105.14494 * 140.31750 * 14 12 11 16 16 N 1.47908 * 107.22336 * 1.12240 * 15 14 12 17 17 C 1.46897 * 111.00072 * 214.25473 * 16 15 14 18 18 C 1.50703 * 109.47306 * 176.61381 * 17 16 15 19 19 O 1.21296 * 119.99416 * 6.14417 * 18 17 16 20 20 N 1.34774 * 120.00292 * 186.13956 * 18 17 16 21 21 C 1.37094 * 119.99583 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00525 * 0.02562 * 21 20 18 23 23 C 1.38960 * 119.99524 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99916 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99922 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47258 * 59.99878 * 25 23 21 27 27 H 1.48500 * 109.47258 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47123 * 300.00291 * 25 23 21 29 29 C 1.48811 * 105.67826 * 334.90819 * 16 15 14 30 30 H 1.07999 * 119.99778 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00809 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00035 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47609 * 55.00108 * 5 3 2 34 34 H 1.09005 * 109.47087 * 174.99718 * 5 3 2 35 35 H 1.08998 * 109.46689 * 299.99965 * 6 5 3 36 36 H 1.08992 * 109.46980 * 60.00232 * 6 5 3 37 37 H 1.08997 * 109.46672 * 180.02562 * 6 5 3 38 38 H 1.09002 * 109.47503 * 305.00607 * 7 3 2 39 39 H 1.09001 * 109.47299 * 185.00327 * 7 3 2 40 40 H 0.97003 * 119.99702 * 359.97438 * 10 8 7 41 41 H 1.08996 * 109.47310 * 59.99054 * 11 10 8 42 42 H 1.09001 * 109.46729 * 299.99743 * 11 10 8 43 43 H 1.09001 * 110.31099 * 21.39852 * 14 12 11 44 44 H 1.09003 * 110.31099 * 259.22872 * 14 12 11 45 45 H 1.08994 * 109.92289 * 120.57427 * 15 14 12 46 46 H 1.09009 * 109.91688 * 241.67970 * 15 14 12 47 47 H 1.08996 * 109.47542 * 296.62245 * 17 16 15 48 48 H 1.09010 * 109.46875 * 56.61739 * 17 16 15 49 49 H 0.97003 * 119.99922 * 0.02562 * 20 18 17 50 50 H 0.96997 * 119.99530 * 180.02562 * 24 23 21 51 51 H 1.08994 * 110.51834 * 280.53989 * 29 16 15 52 52 H 1.09006 * 110.69606 * 157.49055 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 0.0005 5 6 2.9430 1.3862 1.2493 6 6 2.0563 1.4307 2.4953 7 6 2.9430 1.3863 -1.2492 8 6 2.0697 1.4302 -2.4765 9 8 0.8626 1.3991 -2.3633 10 7 2.6300 1.5029 -3.7002 11 6 1.7810 1.5461 -4.8933 12 6 2.6606 1.6271 -6.1424 13 1 3.3223 2.4919 -6.0943 14 6 3.4744 0.3252 -6.3239 15 6 3.4574 0.0480 -7.8386 16 7 2.7013 1.1475 -8.4766 17 6 1.9450 0.6614 -9.6384 18 6 1.1243 1.7883 -10.2108 19 8 1.2488 2.9125 -9.7727 20 7 0.2522 1.5470 -11.2096 21 6 -0.4939 2.5723 -11.7306 22 1 -0.3826 3.5735 -11.3411 23 6 -1.3935 2.3235 -12.7601 24 7 -1.5294 1.1052 -13.2338 25 14 -2.4097 3.7205 -13.4706 26 1 -1.5044 4.7574 -14.0281 27 1 -3.2863 3.1966 -14.5486 28 1 -3.2466 4.3184 -12.3994 29 6 1.7905 1.6731 -7.4237 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5905 0.5106 1.2952 34 1 3.5539 2.2879 1.2056 35 1 1.4088 2.3063 2.4494 36 1 1.4455 0.5290 2.5390 37 1 2.6830 1.4889 3.3852 38 1 3.5905 0.5106 -1.2952 39 1 3.5539 2.2880 -1.2056 40 1 3.5955 1.5273 -3.7908 41 1 1.1341 2.4221 -4.8473 42 1 1.1695 0.6449 -4.9368 43 1 3.0014 -0.4950 -5.7839 44 1 4.4979 0.4673 -5.9769 45 1 4.4768 0.0262 -8.2236 46 1 2.9655 -0.9045 -8.0363 47 1 2.6381 0.2954 -10.3958 48 1 1.2843 -0.1485 -9.3288 49 1 0.1525 0.6479 -11.5598 50 1 -2.1571 0.9316 -13.9526 51 1 0.9167 1.0302 -7.3186 52 1 1.4914 2.6968 -7.6490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:36 Heat of formation + Delta-G solvation = -65.643852 kcal Electronic energy + Delta-G solvation = -28739.552478 eV Core-core repulsion = 24738.773829 eV Total energy + Delta-G solvation = -4000.778649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.14643 -39.20749 -37.70935 -36.98411 -34.99352 -33.89592 -32.20075 -31.98233 -31.20523 -30.63800 -29.25115 -27.08872 -25.71161 -24.39262 -23.74836 -21.94530 -21.27528 -20.42954 -20.23755 -19.73139 -19.17167 -17.86322 -17.15064 -16.57596 -16.03761 -15.85594 -15.39875 -15.16058 -14.98686 -14.77141 -14.50244 -14.33747 -14.21700 -13.77270 -13.75655 -13.62518 -13.34045 -12.97487 -12.70356 -12.47631 -12.35738 -12.10817 -12.02328 -11.72907 -11.64282 -11.51286 -11.49657 -11.20629 -11.13596 -11.01889 -11.01232 -10.78602 -10.76121 -10.58725 -10.43084 -10.20907 -10.00498 -9.47066 -9.33449 -9.12869 -8.41784 -8.02284 -7.92262 -6.41244 -3.82027 2.25718 2.55895 3.01687 3.20683 3.26413 3.30811 3.90685 4.05031 4.25115 4.40007 4.44523 4.51340 4.59034 4.73397 4.78904 4.91237 4.93049 5.06794 5.13244 5.13991 5.17729 5.23179 5.25833 5.31760 5.37893 5.48326 5.52740 5.57846 5.63423 5.71404 5.72168 5.75180 5.78823 5.80331 5.87050 5.90483 5.93021 5.99094 6.09113 6.22174 6.27775 6.34633 6.52885 6.55574 6.75014 7.16552 7.25615 7.36188 7.55489 8.06333 8.12306 8.61999 9.18317 9.54512 10.06234 10.76398 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.001785 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.046632 B =15685.989380 C =16517.291899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.135 4.135 8 C 0.508 3.492 9 O -0.531 6.531 10 N -0.731 5.731 11 C 0.130 3.870 12 C -0.106 4.106 13 H 0.089 0.911 14 C -0.125 4.125 15 C 0.032 3.968 16 N -0.493 5.493 17 C 0.037 3.963 18 C 0.442 3.558 19 O -0.579 6.579 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.049 3.951 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.399 0.601 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.042 0.958 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.040 0.960 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.932 -5.213 25.367 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.294 3.706 9 O -0.407 6.407 10 N -0.383 5.383 11 C 0.006 3.994 12 C -0.125 4.125 13 H 0.108 0.892 14 C -0.163 4.163 15 C -0.096 4.096 16 N -0.217 5.217 17 C -0.094 4.094 18 C 0.227 3.773 19 O -0.463 6.463 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.079 4.079 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.058 0.942 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.334 -4.152 25.357 28.083 hybrid contribution -0.645 -0.761 -0.700 1.219 sum 10.688 -4.913 24.657 27.319 Atomic orbital electron populations 1.23717 0.95953 1.01384 0.98805 1.22606 0.95978 0.96988 1.01690 1.20157 0.96576 0.97161 0.92437 0.90047 1.21542 0.97851 1.01913 0.94049 1.21759 0.99844 1.02200 0.97089 1.21721 0.98708 1.04247 0.92787 1.20680 0.89283 0.76115 0.84554 1.90730 1.14803 1.48546 1.86583 1.46060 1.10399 1.75865 1.05996 1.21337 0.92889 1.02496 0.82691 1.22363 0.97529 0.98702 0.93905 0.89244 1.22473 1.00373 0.97315 0.96112 1.22907 0.99679 0.93472 0.93521 1.64583 1.23673 1.28134 1.05345 1.22081 0.96688 0.96302 0.94356 1.19707 0.83953 0.89672 0.83927 1.90486 1.69660 1.23522 1.62667 1.41856 1.35138 1.11522 1.31433 1.19655 1.16695 0.91257 1.15332 0.87941 1.25262 0.98103 0.97518 0.97016 1.69605 1.37217 1.19622 1.27851 0.85916 0.79363 0.80470 0.78461 1.19887 1.20986 1.19913 1.23314 0.93178 1.03357 0.88013 0.89223 0.88597 0.88169 0.91867 0.91823 0.92775 0.92379 0.92919 0.88951 0.88826 0.76754 0.91120 0.91526 0.91490 0.91219 0.90505 0.93980 0.89153 0.93474 0.77493 0.91827 0.94152 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 13.22 29.01 0.38 -1.20 16 2 C -0.15 -1.34 6.76 -36.02 -0.24 -1.59 16 3 C -0.04 -0.34 1.82 -91.77 -0.17 -0.50 16 4 H 0.08 0.76 7.60 -51.93 -0.39 0.36 16 5 C -0.12 -0.66 5.39 -26.73 -0.14 -0.80 16 6 C -0.15 -0.90 9.73 37.16 0.36 -0.54 16 7 C -0.13 -0.89 5.16 -27.88 -0.14 -1.04 16 8 C 0.51 5.20 7.58 -10.98 -0.08 5.12 16 9 O -0.53 -7.57 14.17 5.56 0.08 -7.49 16 10 N -0.73 -6.55 5.40 -60.30 -0.33 -6.88 16 11 C 0.13 1.47 5.00 -4.05 -0.02 1.45 16 12 C -0.11 -1.22 3.13 -88.76 -0.28 -1.50 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.24 6.20 -25.38 -0.16 -1.40 16 15 C 0.03 0.40 6.69 -2.75 -0.02 0.38 16 16 N -0.49 -8.15 5.11 -231.64 -1.18 -9.34 16 17 C 0.04 0.68 5.31 -4.98 -0.03 0.65 16 18 C 0.44 10.45 7.42 -10.99 -0.08 10.37 16 19 O -0.58 -15.48 13.89 5.54 0.08 -15.40 16 20 N -0.56 -14.33 5.29 -10.96 -0.06 -14.38 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 25 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 29 C 0.05 0.79 5.05 -1.74 -0.01 0.78 16 30 H 0.09 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.10 1.02 7.83 -52.49 -0.41 0.60 16 32 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.38 7.38 -51.93 -0.38 -0.01 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.40 2.49 8.33 -40.82 -0.34 2.15 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.83 8.08 -51.93 -0.42 0.42 16 43 H 0.07 0.64 7.80 -51.93 -0.41 0.23 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.50 7.68 -51.92 -0.40 0.10 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.05 0.78 7.99 -51.92 -0.41 0.37 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 52 H 0.11 2.11 6.46 -51.93 -0.34 1.77 16 LS Contribution 417.52 15.07 6.29 6.29 Total: -1.00 -32.82 417.52 -9.53 -42.35 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -9.24 Total: 10.41 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.87 Total: 2.18 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.84 Total: -54.49 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.16 Total: -22.89 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.82 -9.53 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.298 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds