Wall clock time and date at job start Tue Mar 31 2020 20:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99421 * 2 1 4 4 H 1.09002 * 109.47460 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.46697 * 120.00081 * 3 2 1 6 6 C 1.53000 * 109.47243 * 294.99800 * 5 3 2 7 7 C 1.53000 * 109.47067 * 239.99696 * 3 2 1 8 8 C 1.50702 * 109.46860 * 65.00556 * 7 3 2 9 9 O 1.21278 * 120.00109 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00086 * 180.02562 * 8 7 3 11 11 C 1.46494 * 120.00336 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47334 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.78832 * 303.20296 * 12 11 10 14 14 C 1.54595 * 110.72583 * 66.45262 * 12 11 10 15 15 C 1.53993 * 105.14494 * 140.31750 * 14 12 11 16 16 N 1.47908 * 107.22336 * 1.12240 * 15 14 12 17 17 C 1.46897 * 111.00072 * 214.25473 * 16 15 14 18 18 C 1.50703 * 109.47306 * 176.61381 * 17 16 15 19 19 O 1.21296 * 119.99416 * 6.14417 * 18 17 16 20 20 N 1.34774 * 120.00292 * 186.13956 * 18 17 16 21 21 C 1.37094 * 119.99583 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00525 * 0.02562 * 21 20 18 23 23 C 1.38960 * 119.99524 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99916 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99922 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47258 * 59.99878 * 25 23 21 27 27 H 1.48500 * 109.47258 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47123 * 300.00291 * 25 23 21 29 29 C 1.48811 * 105.67826 * 334.90819 * 16 15 14 30 30 H 1.07999 * 119.99778 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00809 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00035 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47609 * 55.00108 * 5 3 2 34 34 H 1.09005 * 109.47087 * 174.99718 * 5 3 2 35 35 H 1.08998 * 109.46689 * 299.99965 * 6 5 3 36 36 H 1.08992 * 109.46980 * 60.00232 * 6 5 3 37 37 H 1.08997 * 109.46672 * 180.02562 * 6 5 3 38 38 H 1.09002 * 109.47503 * 305.00607 * 7 3 2 39 39 H 1.09001 * 109.47299 * 185.00327 * 7 3 2 40 40 H 0.97003 * 119.99702 * 359.97438 * 10 8 7 41 41 H 1.08996 * 109.47310 * 59.99054 * 11 10 8 42 42 H 1.09001 * 109.46729 * 299.99743 * 11 10 8 43 43 H 1.09001 * 110.31099 * 21.39852 * 14 12 11 44 44 H 1.09003 * 110.31099 * 259.22872 * 14 12 11 45 45 H 1.08994 * 109.92289 * 120.57427 * 15 14 12 46 46 H 1.09009 * 109.91688 * 241.67970 * 15 14 12 47 47 H 1.08996 * 109.47542 * 296.62245 * 17 16 15 48 48 H 1.09010 * 109.46875 * 56.61739 * 17 16 15 49 49 H 0.97003 * 119.99922 * 0.02562 * 20 18 17 50 50 H 0.96997 * 119.99530 * 180.02562 * 24 23 21 51 51 H 1.08994 * 110.51834 * 280.53989 * 29 16 15 52 52 H 1.09006 * 110.69606 * 157.49055 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 0.0005 5 6 2.9430 1.3862 1.2493 6 6 2.0563 1.4307 2.4953 7 6 2.9430 1.3863 -1.2492 8 6 2.0697 1.4302 -2.4765 9 8 0.8626 1.3991 -2.3633 10 7 2.6300 1.5029 -3.7002 11 6 1.7810 1.5461 -4.8933 12 6 2.6606 1.6271 -6.1424 13 1 3.3223 2.4919 -6.0943 14 6 3.4744 0.3252 -6.3239 15 6 3.4574 0.0480 -7.8386 16 7 2.7013 1.1475 -8.4766 17 6 1.9450 0.6614 -9.6384 18 6 1.1243 1.7883 -10.2108 19 8 1.2488 2.9125 -9.7727 20 7 0.2522 1.5470 -11.2096 21 6 -0.4939 2.5723 -11.7306 22 1 -0.3826 3.5735 -11.3411 23 6 -1.3935 2.3235 -12.7601 24 7 -1.5294 1.1052 -13.2338 25 14 -2.4097 3.7205 -13.4706 26 1 -1.5044 4.7574 -14.0281 27 1 -3.2863 3.1966 -14.5486 28 1 -3.2466 4.3184 -12.3994 29 6 1.7905 1.6731 -7.4237 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5905 0.5106 1.2952 34 1 3.5539 2.2879 1.2056 35 1 1.4088 2.3063 2.4494 36 1 1.4455 0.5290 2.5390 37 1 2.6830 1.4889 3.3852 38 1 3.5905 0.5106 -1.2952 39 1 3.5539 2.2880 -1.2056 40 1 3.5955 1.5273 -3.7908 41 1 1.1341 2.4221 -4.8473 42 1 1.1695 0.6449 -4.9368 43 1 3.0014 -0.4950 -5.7839 44 1 4.4979 0.4673 -5.9769 45 1 4.4768 0.0262 -8.2236 46 1 2.9655 -0.9045 -8.0363 47 1 2.6381 0.2954 -10.3958 48 1 1.2843 -0.1485 -9.3288 49 1 0.1525 0.6479 -11.5598 50 1 -2.1571 0.9316 -13.9526 51 1 0.9167 1.0302 -7.3186 52 1 1.4914 2.6968 -7.6490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493228427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:35 Heat of formation + Delta-G solvation = -89.151181 kcal Electronic energy + Delta-G solvation = -28740.571832 eV Core-core repulsion = 24738.773829 eV Total energy + Delta-G solvation = -4001.798003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.05037 -40.54365 -39.24392 -37.68654 -36.14343 -35.77080 -33.45901 -33.06272 -32.58694 -31.37852 -30.22156 -28.53801 -26.90945 -25.81348 -24.70893 -22.50973 -22.40629 -21.34287 -21.17611 -20.97940 -20.39350 -19.88360 -17.97420 -17.89925 -17.18699 -16.81060 -16.60179 -16.47489 -16.18867 -16.03246 -15.60478 -15.57950 -15.29969 -14.87282 -14.77225 -14.52399 -14.40257 -14.08203 -13.97281 -13.66603 -13.52280 -13.20142 -13.00548 -12.93179 -12.87448 -12.77512 -12.44912 -12.40719 -12.20092 -12.13308 -12.03050 -12.01019 -11.87931 -11.66399 -11.50738 -11.46657 -11.34089 -10.84345 -10.27310 -10.10686 -10.02241 -9.93645 -9.32672 -8.47938 -5.96655 1.38260 1.40087 1.51075 1.54997 1.78302 2.03207 2.22969 2.27897 2.84970 3.18755 3.30691 3.62845 3.73547 3.85971 3.87670 3.93157 3.94830 4.27348 4.31431 4.32510 4.34891 4.38791 4.42802 4.46714 4.48571 4.57933 4.61430 4.68278 4.72662 4.77947 4.81487 4.88023 4.98187 5.03548 5.08295 5.08956 5.10993 5.20839 5.23702 5.31174 5.39344 5.41353 5.47774 5.50595 5.84241 5.84799 5.95931 6.06969 6.11003 6.58995 6.66358 7.11261 7.38608 7.54314 8.10157 8.69272 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.001785 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.046632 B =15685.989380 C =16517.291899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.056 0.944 5 C -0.109 4.109 6 C -0.154 4.154 7 C -0.126 4.126 8 C 0.501 3.499 9 O -0.578 6.578 10 N -0.717 5.717 11 C 0.140 3.860 12 C -0.088 4.088 13 H 0.095 0.905 14 C -0.113 4.113 15 C 0.030 3.970 16 N -0.512 5.512 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.615 6.615 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.047 3.953 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.417 0.583 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.112 0.888 48 H 0.064 0.936 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.029 0.971 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.651 -6.378 26.351 30.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.074 0.926 5 C -0.147 4.147 6 C -0.211 4.211 7 C -0.165 4.165 8 C 0.289 3.711 9 O -0.457 6.457 10 N -0.370 5.370 11 C 0.015 3.985 12 C -0.107 4.107 13 H 0.113 0.887 14 C -0.151 4.151 15 C -0.098 4.098 16 N -0.237 5.237 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.501 6.501 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.082 4.082 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.254 0.746 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.130 0.870 48 H 0.082 0.918 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.047 0.953 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.105 -5.343 26.344 30.357 hybrid contribution -1.468 -0.389 -0.980 1.807 sum 12.637 -5.732 25.364 28.912 Atomic orbital electron populations 1.23688 0.96771 1.00718 1.01223 1.22875 0.95665 0.98226 0.99496 1.20173 0.96642 0.95543 0.94180 0.92556 1.21514 0.97482 1.03297 0.92393 1.21778 0.99963 1.01354 0.98035 1.21760 0.98092 1.06849 0.89802 1.21439 0.89137 0.74890 0.85655 1.90729 1.17117 1.50663 1.87229 1.45889 1.11066 1.75149 1.04899 1.21031 0.92899 1.00801 0.83786 1.22167 0.96755 1.00355 0.91469 0.88662 1.22466 1.01915 0.96094 0.94596 1.23058 0.99675 0.92283 0.94759 1.64549 1.23437 1.30412 1.05280 1.21962 0.96719 0.94018 0.95536 1.20755 0.83252 0.90744 0.82669 1.90468 1.70519 1.25685 1.63391 1.41930 1.35758 1.11176 1.32230 1.19630 1.18725 0.91166 1.16889 0.90313 1.26037 0.98495 1.00004 0.96688 1.69667 1.37524 1.20866 1.28016 0.84994 0.77866 0.77615 0.77888 1.19622 1.19403 1.19867 1.23161 0.93957 1.00576 0.90495 0.88955 0.90444 0.86647 0.90367 0.90409 0.93695 0.93285 0.91761 0.86073 0.86153 0.74636 0.93566 0.92801 0.90488 0.87893 0.88885 0.93111 0.87047 0.91819 0.77075 0.91294 0.95284 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.84 13.22 67.78 0.90 -2.94 16 2 C -0.14 -2.39 6.76 25.65 0.17 -2.22 16 3 C -0.05 -0.63 1.82 -11.54 -0.02 -0.65 16 4 H 0.06 1.06 7.60 -2.39 -0.02 1.04 16 5 C -0.11 -0.96 5.39 30.59 0.16 -0.79 16 6 C -0.15 -1.64 9.73 71.98 0.70 -0.94 16 7 C -0.13 -1.27 5.16 29.85 0.15 -1.12 16 8 C 0.50 9.55 7.58 87.66 0.66 10.21 16 9 O -0.58 -16.79 14.17 -3.02 -0.04 -16.83 16 10 N -0.72 -11.36 5.40 -463.09 -2.50 -13.86 16 11 C 0.14 3.12 5.00 86.38 0.43 3.55 16 12 C -0.09 -1.93 3.13 -9.59 -0.03 -1.96 16 13 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.11 -1.84 6.20 31.47 0.20 -1.65 16 15 C 0.03 0.64 6.69 86.44 0.58 1.22 16 16 N -0.51 -16.47 5.11 -886.76 -4.54 -21.00 16 17 C 0.05 1.75 5.31 85.56 0.45 2.20 16 18 C 0.44 21.32 7.42 87.66 0.65 21.97 16 19 O -0.61 -34.34 13.89 -3.08 -0.04 -34.38 16 20 N -0.57 -30.05 5.29 -306.98 -1.62 -31.68 16 21 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 24 N -0.92 -50.28 13.05 21.67 0.28 -50.00 16 25 Si 0.99 43.64 29.55 68.60 2.03 45.66 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 C 0.05 1.53 5.05 86.60 0.44 1.96 16 30 H 0.09 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.08 1.83 7.83 -2.91 -0.02 1.81 16 32 H 0.12 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.60 7.38 -2.39 -0.02 0.59 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.42 3.63 8.33 -92.71 -0.77 2.86 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 1.36 8.08 -2.39 -0.02 1.34 16 43 H 0.08 1.16 7.80 -2.39 -0.02 1.15 16 44 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.05 1.03 7.68 -2.38 -0.02 1.01 16 47 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 48 H 0.06 2.06 7.99 -2.38 -0.02 2.04 16 49 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 50 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 51 H 0.03 0.99 7.92 -2.39 -0.02 0.97 16 52 H 0.07 2.71 6.46 -2.38 -0.02 2.69 16 Total: -1.00 -75.63 417.52 -0.31 -75.94 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.60 Total: 36.02 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.73 Total: 10.12 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -8.38 Total: -116.53 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.09 Total: -51.21 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.63 -0.31 -75.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.212 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds