Wall clock time and date at job start Tue Mar 31 2020 20:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00010 * 2 1 4 4 H 1.08995 * 109.47330 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47243 * 240.00289 * 3 2 1 6 6 C 1.52998 * 109.47375 * 65.00103 * 5 3 2 7 7 C 1.53000 * 109.47162 * 120.00412 * 3 2 1 8 8 C 1.50702 * 109.46860 * 295.00141 * 7 3 2 9 9 O 1.21278 * 120.00109 * 359.97438 * 8 7 3 10 10 N 1.34779 * 120.00086 * 180.02562 * 8 7 3 11 11 C 1.46494 * 120.00336 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47334 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.78832 * 303.20296 * 12 11 10 14 14 C 1.54595 * 110.72583 * 66.45262 * 12 11 10 15 15 C 1.53993 * 105.14494 * 140.31750 * 14 12 11 16 16 N 1.47908 * 107.22336 * 1.12240 * 15 14 12 17 17 C 1.46897 * 111.00072 * 214.25473 * 16 15 14 18 18 C 1.50703 * 109.47306 * 176.61381 * 17 16 15 19 19 O 1.21296 * 119.99416 * 6.14417 * 18 17 16 20 20 N 1.34774 * 120.00292 * 186.13956 * 18 17 16 21 21 C 1.37094 * 119.99583 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00525 * 0.02562 * 21 20 18 23 23 C 1.38960 * 119.99524 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99916 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99922 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47295 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47291 * 120.00045 * 25 23 21 28 28 H 1.48502 * 109.47342 * 240.00118 * 25 23 21 29 29 C 1.48811 * 105.67826 * 334.90819 * 16 15 14 30 30 H 1.07994 * 120.00354 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99853 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.00115 * 180.02562 * 2 1 3 33 33 H 1.09010 * 109.47390 * 185.00162 * 5 3 2 34 34 H 1.09000 * 109.47577 * 304.99720 * 5 3 2 35 35 H 1.08997 * 109.47089 * 60.00081 * 6 5 3 36 36 H 1.09000 * 109.47173 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.47047 * 299.99821 * 6 5 3 38 38 H 1.09002 * 109.47503 * 175.00192 * 7 3 2 39 39 H 1.09001 * 109.47299 * 54.99912 * 7 3 2 40 40 H 0.97003 * 119.99702 * 359.97438 * 10 8 7 41 41 H 1.08996 * 109.47310 * 59.99054 * 11 10 8 42 42 H 1.09001 * 109.46729 * 299.99743 * 11 10 8 43 43 H 1.09001 * 110.31099 * 21.39852 * 14 12 11 44 44 H 1.09003 * 110.31099 * 259.22872 * 14 12 11 45 45 H 1.08994 * 109.92289 * 120.57427 * 15 14 12 46 46 H 1.09009 * 109.91688 * 241.67970 * 15 14 12 47 47 H 1.08996 * 109.47542 * 296.62245 * 17 16 15 48 48 H 1.09010 * 109.46875 * 56.61739 * 17 16 15 49 49 H 0.97003 * 119.99922 * 0.02562 * 20 18 17 50 50 H 0.96997 * 119.99530 * 180.02562 * 24 23 21 51 51 H 1.08994 * 110.51834 * 280.53989 * 29 16 15 52 52 H 1.09006 * 110.69606 * 157.49055 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0563 1.4308 -2.4953 7 6 2.9431 1.3861 1.2492 8 6 2.0698 1.4299 2.4766 9 8 0.8627 1.3998 2.3633 10 7 2.6302 1.5036 3.7001 11 6 1.7812 1.5456 4.8933 12 6 2.6609 1.6267 6.1424 13 1 3.3576 0.7894 6.1800 14 6 3.4201 2.9726 6.1905 15 6 3.3887 3.3996 7.6697 16 7 2.6770 2.3397 8.4165 17 6 1.8991 2.9085 9.5252 18 6 1.1242 1.8121 10.2097 19 8 1.2956 0.6557 9.8864 20 7 0.2408 2.1165 11.1810 21 6 -0.4636 1.1189 11.8039 22 1 -0.3104 0.0892 11.5167 23 6 -1.3748 1.4328 12.8050 24 7 -1.5615 2.6859 13.1542 25 14 -2.3342 0.0737 13.6544 26 1 -1.9440 -1.2399 13.0819 27 1 -2.0332 0.0895 15.1084 28 1 -3.7886 0.2907 13.4476 29 6 1.7908 1.6740 7.4236 30 1 -0.5400 -0.9352 -0.0004 31 1 -0.5400 0.9354 0.0004 32 1 1.8499 -0.9353 -0.0004 33 1 3.5540 2.2879 -1.2056 34 1 3.5905 0.5106 -1.2953 35 1 1.4089 2.3065 -2.4494 36 1 2.6830 1.4881 -3.3853 37 1 1.4455 0.5292 -2.5390 38 1 3.5540 2.2878 1.2056 39 1 3.5906 0.5104 1.2951 40 1 3.5956 1.5280 3.7907 41 1 1.1710 0.6436 4.9370 42 1 1.1331 2.4208 4.8474 43 1 2.9149 3.7143 5.5718 44 1 4.4493 2.8385 5.8573 45 1 4.4056 3.5018 8.0484 46 1 2.8576 4.3461 7.7717 47 1 2.5750 3.3770 10.2406 48 1 1.2063 3.6554 9.1372 49 1 0.1036 3.0414 11.4392 50 1 -2.1973 2.9049 13.8533 51 1 0.8915 2.2667 7.2563 52 1 1.5335 0.6666 7.7513 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:39 Heat of formation + Delta-G solvation = -65.757378 kcal Electronic energy + Delta-G solvation = -28726.966982 eV Core-core repulsion = 24726.183411 eV Total energy + Delta-G solvation = -4000.783572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.14682 -39.20933 -37.71184 -36.98263 -34.99441 -33.89884 -32.20023 -31.97768 -31.20659 -30.63785 -29.25184 -27.09066 -25.71242 -24.39483 -23.75016 -21.94111 -21.27700 -20.42476 -20.24905 -19.71786 -19.17507 -17.86573 -17.15299 -16.59048 -16.02007 -15.85446 -15.39639 -15.16124 -14.97603 -14.76430 -14.54745 -14.38059 -14.14068 -13.79992 -13.74708 -13.60438 -13.35829 -12.96956 -12.69963 -12.47709 -12.37348 -12.08263 -12.04105 -11.73075 -11.64269 -11.51128 -11.50148 -11.22376 -11.13627 -11.03333 -11.01919 -10.79256 -10.75903 -10.58745 -10.33563 -10.22274 -10.00263 -9.49218 -9.32763 -9.12752 -8.41990 -8.02493 -7.92459 -6.41718 -3.82360 2.26922 2.55887 3.01651 3.16651 3.27348 3.34547 3.90393 4.04802 4.25008 4.39962 4.44843 4.51304 4.58950 4.73256 4.78650 4.91145 4.93391 5.07489 5.12992 5.14698 5.17945 5.22552 5.25647 5.32529 5.37309 5.47641 5.53244 5.57892 5.63190 5.71273 5.71944 5.75044 5.79353 5.80253 5.87044 5.90627 5.92846 5.99396 6.08947 6.22012 6.27562 6.34578 6.52805 6.56917 6.76039 7.16404 7.25485 7.36139 7.55657 8.06546 8.12261 8.61662 9.18272 9.54357 10.05928 10.76107 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.001805 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.890410 B =15505.141092 C =16643.088299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.135 4.135 8 C 0.508 3.492 9 O -0.531 6.531 10 N -0.731 5.731 11 C 0.130 3.870 12 C -0.106 4.106 13 H 0.089 0.911 14 C -0.125 4.125 15 C 0.032 3.968 16 N -0.493 5.493 17 C 0.037 3.963 18 C 0.442 3.558 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.049 3.951 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.399 0.601 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.042 0.958 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.040 0.960 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.805 2.536 -25.801 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.294 3.706 9 O -0.407 6.407 10 N -0.383 5.383 11 C 0.006 3.994 12 C -0.125 4.125 13 H 0.107 0.893 14 C -0.163 4.163 15 C -0.096 4.096 16 N -0.217 5.217 17 C -0.094 4.094 18 C 0.228 3.772 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.079 4.079 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.059 0.941 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.256 1.452 -25.691 28.086 hybrid contribution -0.684 0.679 0.644 1.159 sum 10.572 2.131 -25.047 27.271 Atomic orbital electron populations 1.23715 0.95949 1.01383 0.98787 1.22608 0.95990 0.97001 1.01701 1.20152 0.96554 0.97164 0.92430 0.90096 1.21541 0.97851 1.01909 0.94051 1.21759 0.99842 1.02201 0.97087 1.21723 0.98715 1.04244 0.92792 1.20680 0.89284 0.76109 0.84559 1.90730 1.14803 1.48542 1.86587 1.46060 1.10402 1.75857 1.06002 1.21336 0.92869 1.02539 0.82665 1.22363 0.97793 0.98441 0.93904 0.89253 1.22474 1.00593 0.96773 0.96435 1.22907 0.99934 0.93856 0.92883 1.64583 1.25658 1.23884 1.07617 1.22082 0.96522 0.96129 0.94700 1.19711 0.83824 0.89687 0.84004 1.90488 1.68640 1.20636 1.66530 1.41871 1.35592 1.10119 1.32438 1.19756 1.17387 0.90391 1.15261 0.87828 1.25265 0.97962 0.97248 0.97486 1.69621 1.36385 1.16998 1.31287 0.85801 0.78958 0.80785 0.78811 1.19210 1.20748 1.20783 1.23314 0.93255 1.02484 0.88810 0.89181 0.88637 0.88121 0.91855 0.91837 0.92796 0.92921 0.92362 0.88881 0.88900 0.76754 0.91127 0.91522 0.91479 0.91214 0.90504 0.93974 0.89147 0.93466 0.77499 0.91932 0.94147 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 13.22 29.02 0.38 -1.22 16 2 C -0.15 -1.37 6.76 -36.02 -0.24 -1.61 16 3 C -0.04 -0.33 1.82 -91.77 -0.17 -0.50 16 4 H 0.08 0.74 7.60 -51.93 -0.39 0.35 16 5 C -0.12 -0.66 5.39 -26.73 -0.14 -0.80 16 6 C -0.15 -0.90 9.73 37.16 0.36 -0.54 16 7 C -0.13 -0.89 5.16 -27.88 -0.14 -1.04 16 8 C 0.51 5.20 7.58 -10.98 -0.08 5.12 16 9 O -0.53 -7.56 14.17 5.56 0.08 -7.48 16 10 N -0.73 -6.55 5.40 -60.30 -0.33 -6.87 16 11 C 0.13 1.47 5.00 -4.05 -0.02 1.45 16 12 C -0.11 -1.22 3.13 -88.76 -0.28 -1.50 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.23 6.20 -25.38 -0.16 -1.39 16 15 C 0.03 0.40 6.69 -2.75 -0.02 0.38 16 16 N -0.49 -8.14 5.11 -231.64 -1.18 -9.33 16 17 C 0.04 0.67 5.31 -4.98 -0.03 0.65 16 18 C 0.44 10.45 7.42 -10.99 -0.08 10.37 16 19 O -0.58 -15.47 13.89 5.54 0.08 -15.39 16 20 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.05 0.79 5.05 -1.74 -0.01 0.78 16 30 H 0.09 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.10 1.02 7.83 -52.48 -0.41 0.60 16 32 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 2.49 8.33 -40.82 -0.34 2.15 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 43 H 0.07 0.63 7.80 -51.93 -0.41 0.23 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.50 7.68 -51.92 -0.40 0.10 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.05 0.78 7.99 -51.92 -0.41 0.37 16 49 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 52 H 0.11 2.11 6.46 -51.93 -0.34 1.77 16 LS Contribution 417.52 15.07 6.29 6.29 Total: -1.00 -32.89 417.52 -9.53 -42.42 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -9.24 Total: 10.36 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.87 Total: 2.15 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.84 Total: -54.49 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.16 Total: -22.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.89 -9.53 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.336 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds