Wall clock time and date at job start Tue Mar 31 2020 19:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 H 1.09006 * 115.54795 * 29.32969 * 3 2 1 5 5 C 1.52999 * 117.50234 * 243.62449 * 3 2 1 6 6 C 1.52998 * 117.50012 * 174.99908 * 3 2 1 7 7 H 1.09001 * 117.49908 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49682 * 214.98203 * 6 3 2 9 9 O 1.21280 * 120.00442 * 359.97438 * 8 6 3 10 10 N 1.34782 * 119.99649 * 180.02562 * 8 6 3 11 11 C 1.46498 * 119.99810 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47106 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46943 * 179.97438 * 12 11 10 14 14 H 1.08992 * 110.64585 * 303.30636 * 13 12 11 15 15 C 1.54600 * 110.72258 * 66.45815 * 13 12 11 16 16 C 1.53994 * 105.14079 * 140.48884 * 15 13 12 17 17 N 1.47901 * 107.05483 * 1.22496 * 16 15 13 18 18 C 1.46906 * 110.99930 * 214.15316 * 17 16 15 19 19 C 1.50692 * 109.47142 * 176.64096 * 18 17 16 20 20 O 1.21293 * 120.00556 * 6.13526 * 19 18 17 21 21 N 1.34776 * 119.99831 * 186.13508 * 19 18 17 22 22 C 1.37101 * 120.00231 * 179.72332 * 21 19 18 23 23 H 1.08005 * 119.99897 * 0.27309 * 22 21 19 24 24 C 1.38949 * 120.00349 * 180.27930 * 22 21 19 25 25 N 1.31411 * 120.00101 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99852 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47160 * 59.99807 * 26 24 22 28 28 H 1.48499 * 109.46955 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47041 * 299.99512 * 26 24 22 30 30 C 1.48530 * 105.82267 * 334.66664 * 17 16 15 31 31 H 1.08998 * 109.47285 * 59.99840 * 1 2 3 32 32 H 1.09001 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46838 * 300.00169 * 1 2 3 34 34 H 1.09003 * 109.47292 * 240.00403 * 2 1 3 35 35 H 1.08998 * 109.47285 * 120.00160 * 2 1 3 36 36 H 1.08997 * 117.49750 * 145.02147 * 5 3 2 37 37 H 1.09000 * 117.49490 * 0.02562 * 5 3 2 38 38 H 0.97003 * 119.99941 * 359.97438 * 10 8 6 39 39 H 1.08999 * 109.47203 * 60.00073 * 11 10 8 40 40 H 1.09002 * 109.47435 * 300.00246 * 11 10 8 41 41 H 1.08999 * 109.46855 * 60.00074 * 12 11 10 42 42 H 1.08997 * 109.46876 * 299.99981 * 12 11 10 43 43 H 1.09004 * 110.31015 * 21.57391 * 15 13 12 44 44 H 1.09003 * 110.30580 * 259.40881 * 15 13 12 45 45 H 1.08999 * 109.91719 * 241.87327 * 16 15 13 46 46 H 1.08997 * 109.91115 * 120.57337 * 16 15 13 47 47 H 1.09000 * 109.46979 * 56.63543 * 18 17 16 48 48 H 1.09002 * 109.46915 * 296.64168 * 18 17 16 49 49 H 0.97005 * 120.00053 * 0.02562 * 21 19 18 50 50 H 0.96999 * 120.00176 * 180.02562 * 25 24 22 51 51 H 1.09006 * 110.66713 * 157.64078 * 30 17 16 52 52 H 1.08998 * 110.67080 * 280.77302 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8440 1.9077 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1966 8 6 4.0228 2.8620 0.8915 9 8 3.2158 3.6170 1.3912 10 7 5.3424 3.1005 1.0268 11 6 5.8019 4.2713 1.7780 12 6 7.3315 4.3077 1.7802 13 6 7.8114 5.5309 2.5642 14 1 7.3902 6.4449 2.1458 15 6 7.4500 5.3973 4.0614 16 6 8.6696 5.9520 4.8206 17 7 9.6461 6.4003 3.8042 18 6 11.0237 6.1815 4.2652 19 6 11.9866 6.5723 3.1739 20 8 11.5745 7.0950 2.1599 21 7 13.3058 6.3410 3.3245 22 6 14.1813 6.6913 2.3293 23 1 13.8143 7.1567 1.4264 24 6 15.5406 6.4475 2.4822 25 7 15.9873 5.8816 3.5809 26 14 16.7334 6.9255 1.1264 27 1 16.6556 8.3898 0.8922 28 1 18.1150 6.5623 1.5319 29 1 16.3780 6.2048 -0.1224 30 6 9.3590 5.6002 2.5862 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.7213 2.9428 -1.5342 37 1 3.0092 1.1861 -2.0159 38 1 5.9879 2.4969 0.6268 39 1 5.4388 4.2103 2.8039 40 1 5.4172 5.1774 1.3097 41 1 7.6950 4.3686 0.7544 42 1 7.7158 3.4017 2.2488 43 1 7.2877 4.3508 4.3195 44 1 6.5619 5.9863 4.2902 45 1 9.1097 5.1695 5.4386 46 1 8.3678 6.7947 5.4426 47 1 11.1615 5.1288 4.5116 48 1 11.2115 6.7894 5.1503 49 1 13.6354 5.9226 4.1353 50 1 16.9363 5.7118 3.6878 51 1 9.7341 6.1059 1.6964 52 1 9.7877 4.6017 2.6719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494064007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:24 Heat of formation + Delta-G solvation = -63.400995 kcal Electronic energy + Delta-G solvation = -28175.185220 eV Core-core repulsion = 24174.503829 eV Total energy + Delta-G solvation = -4000.681391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.33846 -39.32726 -37.83733 -37.40775 -35.54012 -33.95593 -33.05916 -32.43138 -31.23471 -30.01181 -28.25429 -26.52915 -24.96560 -24.22782 -23.92239 -22.61018 -21.13038 -20.84658 -20.51778 -19.74540 -19.15667 -17.86339 -17.55610 -16.45895 -16.31206 -15.72504 -15.37790 -15.19649 -15.12385 -14.88773 -14.62493 -14.39949 -14.31311 -13.93350 -13.73401 -13.44329 -12.95413 -12.90983 -12.79515 -12.55255 -12.52054 -12.25275 -12.03051 -11.78667 -11.76224 -11.59888 -11.47959 -11.47062 -11.16934 -10.89337 -10.89079 -10.70412 -10.55358 -10.48532 -10.45587 -10.43415 -10.21882 -10.03165 -9.47650 -9.32609 -8.40318 -8.00713 -7.90763 -6.42144 -3.82999 2.21078 2.81902 3.19297 3.25115 3.29405 3.41733 3.90555 4.07240 4.17214 4.28812 4.32596 4.37795 4.51040 4.68272 4.71892 4.75566 4.79721 4.89221 4.97216 5.03216 5.14033 5.17607 5.23007 5.24925 5.30296 5.34825 5.46797 5.52567 5.54102 5.55357 5.63425 5.64788 5.71195 5.74831 5.82549 5.85028 5.90732 5.94360 5.96312 5.98310 6.15080 6.18904 6.28736 6.37338 6.58009 7.21195 7.24364 7.30514 7.54381 7.95761 8.05677 8.61515 9.17551 9.53986 10.05966 10.75547 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.001584 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.138302 B =17673.384514 C =18588.032152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.123 0.877 8 C 0.541 3.459 9 O -0.542 6.542 10 N -0.727 5.727 11 C 0.119 3.881 12 C -0.122 4.122 13 C -0.089 4.089 14 H 0.086 0.914 15 C -0.126 4.126 16 C 0.033 3.967 17 N -0.495 5.495 18 C 0.037 3.963 19 C 0.443 3.557 20 O -0.579 6.579 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 C 0.046 3.954 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.076 0.924 47 H 0.046 0.954 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.106 0.894 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.439 -12.798 -3.354 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.215 4.215 7 H 0.141 0.859 8 C 0.327 3.673 9 O -0.419 6.419 10 N -0.378 5.378 11 C -0.004 4.004 12 C -0.160 4.160 13 C -0.109 4.109 14 H 0.104 0.896 15 C -0.164 4.164 16 C -0.095 4.095 17 N -0.218 5.218 18 C -0.094 4.094 19 C 0.228 3.772 20 O -0.463 6.463 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.081 4.081 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.236 0.764 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.124 0.876 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.111 -11.364 -3.691 27.809 hybrid contribution 1.605 -1.222 0.064 2.018 sum -23.506 -12.586 -3.626 26.909 Atomic orbital electron populations 1.21742 0.95095 1.01707 1.02210 1.21163 0.96375 0.93553 1.02179 1.22492 0.91267 0.98800 1.01067 0.86402 1.23113 1.01906 1.03268 0.90273 1.22319 0.97907 0.98956 1.02277 0.85900 1.19675 0.82233 0.85578 0.79779 1.90702 1.53971 1.48683 1.48558 1.45990 1.07019 1.28847 1.55905 1.21438 0.94450 0.87962 0.96535 1.21789 0.93548 0.98929 1.01709 1.22037 0.96477 0.97725 0.94652 0.89571 1.22500 0.98113 1.00764 0.95071 1.22913 0.92848 0.98789 0.94999 1.64517 1.01324 1.52502 1.03504 1.22077 0.89242 0.99634 0.98492 1.19723 0.83162 0.85359 0.88944 1.90483 1.77460 1.47549 1.30792 1.41862 1.04822 1.54143 1.19215 1.19653 0.87194 1.37309 0.98771 0.87969 1.25252 0.97740 0.97095 0.97788 1.69604 1.15729 1.42887 1.26124 0.85922 0.78694 0.79156 0.80469 1.19879 1.20987 1.19949 1.23347 0.92945 0.95799 0.96016 0.92488 0.92568 0.92455 0.91615 0.91393 0.88240 0.87721 0.76417 0.91280 0.91324 0.90776 0.91264 0.91655 0.91117 0.94079 0.90545 0.93571 0.89237 0.77504 0.91835 0.87579 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.87 37.16 0.37 -0.39 16 2 C -0.10 -0.51 6.22 -26.73 -0.17 -0.68 16 3 C -0.12 -0.84 5.25 -90.62 -0.48 -1.32 16 4 H 0.12 1.06 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -0.94 9.88 -26.73 -0.26 -1.20 16 6 C -0.19 -1.41 5.91 -91.77 -0.54 -1.95 16 7 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 8 C 0.54 5.60 7.61 -10.98 -0.08 5.52 16 9 O -0.54 -7.78 16.26 5.56 0.09 -7.68 16 10 N -0.73 -6.24 5.56 -60.29 -0.33 -6.57 16 11 C 0.12 1.14 5.52 -4.04 -0.02 1.12 16 12 C -0.12 -1.15 4.74 -26.73 -0.13 -1.27 16 13 C -0.09 -1.07 3.08 -88.76 -0.27 -1.34 16 14 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.13 -1.39 5.66 -25.37 -0.14 -1.53 16 16 C 0.03 0.43 6.70 -2.75 -0.02 0.41 16 17 N -0.49 -8.38 5.11 -231.89 -1.18 -9.56 16 18 C 0.04 0.68 5.30 -4.98 -0.03 0.65 16 19 C 0.44 10.45 7.41 -10.99 -0.08 10.37 16 20 O -0.58 -15.45 13.87 5.55 0.08 -15.37 16 21 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 26 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 C 0.05 0.74 5.04 -1.90 -0.01 0.73 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.29 7.88 -51.93 -0.41 -0.12 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.48 8.03 -51.93 -0.42 0.06 16 38 H 0.40 2.44 8.47 -40.82 -0.35 2.09 16 39 H 0.07 0.71 7.50 -51.93 -0.39 0.32 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 43 H 0.06 0.64 7.80 -51.93 -0.41 0.24 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.05 0.77 7.98 -51.93 -0.41 0.35 16 48 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.11 2.05 6.43 -51.93 -0.33 1.72 16 52 H 0.04 0.58 7.92 -51.93 -0.41 0.17 16 LS Contribution 419.82 15.07 6.33 6.33 Total: -1.00 -33.00 419.82 -10.74 -43.74 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -9.25 Total: 10.07 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.11 Total: 1.17 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.85 Total: -54.18 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.00 -10.74 -43.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494064007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.661 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds