Wall clock time and date at job start Tue Mar 31 2020 19:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 H 1.09006 * 115.54795 * 29.32969 * 3 2 1 5 5 C 1.52999 * 117.50234 * 243.62449 * 3 2 1 6 6 C 1.52998 * 117.50012 * 174.99908 * 3 2 1 7 7 H 1.09001 * 117.49908 * 359.97438 * 6 3 2 8 8 C 1.50702 * 117.49682 * 214.98203 * 6 3 2 9 9 O 1.21280 * 120.00442 * 359.97438 * 8 6 3 10 10 N 1.34782 * 119.99649 * 180.02562 * 8 6 3 11 11 C 1.46498 * 119.99810 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47106 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46943 * 179.97438 * 12 11 10 14 14 H 1.08992 * 110.64585 * 303.30636 * 13 12 11 15 15 C 1.54600 * 110.72258 * 66.45815 * 13 12 11 16 16 C 1.53994 * 105.14079 * 140.48884 * 15 13 12 17 17 N 1.47901 * 107.05483 * 1.22496 * 16 15 13 18 18 C 1.46906 * 110.99930 * 214.15316 * 17 16 15 19 19 C 1.50692 * 109.47142 * 176.64096 * 18 17 16 20 20 O 1.21293 * 120.00556 * 6.13526 * 19 18 17 21 21 N 1.34776 * 119.99831 * 186.13508 * 19 18 17 22 22 C 1.37101 * 120.00231 * 179.72332 * 21 19 18 23 23 H 1.08005 * 119.99897 * 0.27309 * 22 21 19 24 24 C 1.38949 * 120.00349 * 180.27930 * 22 21 19 25 25 N 1.31411 * 120.00101 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99852 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47160 * 59.99807 * 26 24 22 28 28 H 1.48499 * 109.46955 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47041 * 299.99512 * 26 24 22 30 30 C 1.48530 * 105.82267 * 334.66664 * 17 16 15 31 31 H 1.08998 * 109.47285 * 59.99840 * 1 2 3 32 32 H 1.09001 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46838 * 300.00169 * 1 2 3 34 34 H 1.09003 * 109.47292 * 240.00403 * 2 1 3 35 35 H 1.08998 * 109.47285 * 120.00160 * 2 1 3 36 36 H 1.08997 * 117.49750 * 145.02147 * 5 3 2 37 37 H 1.09000 * 117.49490 * 0.02562 * 5 3 2 38 38 H 0.97003 * 119.99941 * 359.97438 * 10 8 6 39 39 H 1.08999 * 109.47203 * 60.00073 * 11 10 8 40 40 H 1.09002 * 109.47435 * 300.00246 * 11 10 8 41 41 H 1.08999 * 109.46855 * 60.00074 * 12 11 10 42 42 H 1.08997 * 109.46876 * 299.99981 * 12 11 10 43 43 H 1.09004 * 110.31015 * 21.57391 * 15 13 12 44 44 H 1.09003 * 110.30580 * 259.40881 * 15 13 12 45 45 H 1.08999 * 109.91719 * 241.87327 * 16 15 13 46 46 H 1.08997 * 109.91115 * 120.57337 * 16 15 13 47 47 H 1.09000 * 109.46979 * 56.63543 * 18 17 16 48 48 H 1.09002 * 109.46915 * 296.64168 * 18 17 16 49 49 H 0.97005 * 120.00053 * 0.02562 * 21 19 18 50 50 H 0.96999 * 120.00176 * 180.02562 * 25 24 22 51 51 H 1.09006 * 110.66713 * 157.64078 * 30 17 16 52 52 H 1.08998 * 110.67080 * 280.77302 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8440 1.9077 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1966 8 6 4.0228 2.8620 0.8915 9 8 3.2158 3.6170 1.3912 10 7 5.3424 3.1005 1.0268 11 6 5.8019 4.2713 1.7780 12 6 7.3315 4.3077 1.7802 13 6 7.8114 5.5309 2.5642 14 1 7.3902 6.4449 2.1458 15 6 7.4500 5.3973 4.0614 16 6 8.6696 5.9520 4.8206 17 7 9.6461 6.4003 3.8042 18 6 11.0237 6.1815 4.2652 19 6 11.9866 6.5723 3.1739 20 8 11.5745 7.0950 2.1599 21 7 13.3058 6.3410 3.3245 22 6 14.1813 6.6913 2.3293 23 1 13.8143 7.1567 1.4264 24 6 15.5406 6.4475 2.4822 25 7 15.9873 5.8816 3.5809 26 14 16.7334 6.9255 1.1264 27 1 16.6556 8.3898 0.8922 28 1 18.1150 6.5623 1.5319 29 1 16.3780 6.2048 -0.1224 30 6 9.3590 5.6002 2.5862 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.7213 2.9428 -1.5342 37 1 3.0092 1.1861 -2.0159 38 1 5.9879 2.4969 0.6268 39 1 5.4388 4.2103 2.8039 40 1 5.4172 5.1774 1.3097 41 1 7.6950 4.3686 0.7544 42 1 7.7158 3.4017 2.2488 43 1 7.2877 4.3508 4.3195 44 1 6.5619 5.9863 4.2902 45 1 9.1097 5.1695 5.4386 46 1 8.3678 6.7947 5.4426 47 1 11.1615 5.1288 4.5116 48 1 11.2115 6.7894 5.1503 49 1 13.6354 5.9226 4.1353 50 1 16.9363 5.7118 3.6878 51 1 9.7341 6.1059 1.6964 52 1 9.7877 4.6017 2.6719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494064007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:23 Heat of formation + Delta-G solvation = -86.410326 kcal Electronic energy + Delta-G solvation = -28176.182980 eV Core-core repulsion = 24174.503829 eV Total energy + Delta-G solvation = -4001.679151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12064 -40.70045 -39.32933 -38.14762 -36.51387 -35.90872 -34.14879 -33.25300 -32.89638 -31.09753 -29.34588 -28.01706 -26.18585 -25.33362 -24.60841 -23.40635 -22.23977 -21.57886 -21.24636 -20.98724 -20.61479 -19.85769 -18.28190 -17.88148 -17.16488 -16.94414 -16.60598 -16.43724 -16.18792 -16.09107 -15.62431 -15.59556 -15.35665 -15.00249 -14.94818 -14.68125 -14.21329 -14.00492 -13.56351 -13.52873 -13.40470 -13.21433 -13.18145 -12.99077 -12.96474 -12.89491 -12.52292 -12.43055 -12.27213 -12.19770 -12.11718 -11.93265 -11.86780 -11.58314 -11.45378 -11.41200 -11.25845 -11.05763 -10.77385 -10.25528 -10.12576 -10.00801 -9.28628 -8.46466 -5.95248 1.39491 1.41627 1.45495 1.52425 2.04538 2.10730 2.28804 2.84756 2.88047 3.20303 3.34980 3.57332 3.64253 3.76845 3.77667 3.85973 3.98240 4.09854 4.18525 4.24406 4.28264 4.33330 4.35347 4.41080 4.48563 4.49719 4.56001 4.57139 4.66646 4.74323 4.78024 4.80095 4.91456 4.94641 4.98992 5.00640 5.08331 5.15538 5.15682 5.22183 5.29521 5.32798 5.39593 5.41074 5.41956 5.49935 5.88725 6.01031 6.13690 6.52611 6.60676 7.12769 7.21598 7.55779 8.11712 8.70743 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.001584 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.138302 B =17673.384514 C =18588.032152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.125 4.125 4 H 0.092 0.908 5 C -0.138 4.138 6 C -0.194 4.194 7 H 0.151 0.849 8 C 0.534 3.466 9 O -0.589 6.589 10 N -0.716 5.716 11 C 0.126 3.874 12 C -0.108 4.108 13 C -0.081 4.081 14 H 0.076 0.924 15 C -0.119 4.119 16 C 0.032 3.968 17 N -0.519 5.519 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.614 6.614 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.079 0.921 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.271 1.271 30 C 0.047 3.953 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.416 0.584 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.107 0.893 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.064 0.936 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.663 -14.763 -3.289 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.144 4.144 4 H 0.110 0.890 5 C -0.176 4.176 6 C -0.215 4.215 7 H 0.168 0.832 8 C 0.322 3.678 9 O -0.470 6.470 10 N -0.367 5.367 11 C 0.002 3.998 12 C -0.146 4.146 13 C -0.101 4.101 14 H 0.094 0.906 15 C -0.157 4.157 16 C -0.096 4.096 17 N -0.244 5.244 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.500 6.500 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.097 0.903 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.196 1.196 30 C -0.080 4.080 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.253 0.747 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.085 0.915 48 H 0.125 0.875 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.319 -13.357 -3.612 28.853 hybrid contribution 1.636 -0.560 0.057 1.730 sum -23.683 -13.917 -3.556 27.699 Atomic orbital electron populations 1.21753 0.95140 1.02230 1.01752 1.21158 0.96324 0.92242 1.03018 1.22480 0.90905 0.99435 1.01539 0.89019 1.23191 1.00716 1.03241 0.90426 1.22385 0.98274 0.98436 1.02377 0.83178 1.20255 0.82200 0.85949 0.79347 1.90680 1.55183 1.50506 1.50664 1.45908 1.06980 1.28572 1.55237 1.21273 0.94251 0.87901 0.96356 1.21649 0.93263 0.98223 1.01498 1.21928 0.93442 0.98559 0.96132 0.90592 1.22494 0.97612 1.02061 0.93493 1.23011 0.92496 0.99666 0.94387 1.64469 1.01220 1.53731 1.04954 1.21951 0.88755 1.00981 0.96528 1.20721 0.83262 0.83717 0.89616 1.90467 1.78073 1.48764 1.32738 1.41926 1.05389 1.54742 1.18986 1.19630 0.88492 1.39103 0.99143 0.90305 1.26020 0.98643 0.96483 0.99969 1.69666 1.16385 1.42850 1.27214 0.84998 0.76935 0.78680 0.77781 1.19839 1.19474 1.19621 1.23194 0.95663 0.94898 0.94269 0.92517 0.91500 0.93430 0.89996 0.91217 0.89556 0.85148 0.74700 0.91576 0.92737 0.90712 0.89876 0.89773 0.89954 0.92650 0.89780 0.91489 0.87515 0.77078 0.91303 0.91796 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.87 71.98 0.71 -0.66 16 2 C -0.09 -0.81 6.22 30.60 0.19 -0.62 16 3 C -0.12 -1.68 5.25 -10.79 -0.06 -1.74 16 4 H 0.09 1.74 7.60 -2.38 -0.02 1.72 16 5 C -0.14 -1.54 9.88 30.59 0.30 -1.24 16 6 C -0.19 -2.51 5.91 -11.54 -0.07 -2.57 16 7 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 8 C 0.53 10.72 7.61 87.66 0.67 11.38 16 9 O -0.59 -17.24 16.26 -3.03 -0.05 -17.29 16 10 N -0.72 -11.28 5.56 -463.04 -2.57 -13.85 16 11 C 0.13 2.28 5.52 86.38 0.48 2.76 16 12 C -0.11 -1.88 4.74 30.60 0.15 -1.74 16 13 C -0.08 -1.86 3.08 -9.59 -0.03 -1.89 16 14 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 15 C -0.12 -2.33 5.66 31.47 0.18 -2.15 16 16 C 0.03 0.75 6.70 86.45 0.58 1.33 16 17 N -0.52 -17.21 5.11 -887.58 -4.54 -21.74 16 18 C 0.05 1.75 5.30 85.55 0.45 2.21 16 19 C 0.44 21.14 7.41 87.65 0.65 21.79 16 20 O -0.61 -34.04 13.87 -3.07 -0.04 -34.08 16 21 N -0.57 -29.57 5.29 -306.99 -1.62 -31.19 16 22 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 26 Si 0.99 42.80 29.55 68.60 2.03 44.82 16 27 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 30 C 0.05 1.52 5.04 86.65 0.44 1.96 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.49 7.88 -2.39 -0.02 0.47 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.13 0.79 8.03 -2.39 -0.02 0.77 16 38 H 0.42 4.12 8.47 -92.71 -0.79 3.33 16 39 H 0.07 1.27 7.50 -2.39 -0.02 1.25 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 43 H 0.08 1.37 7.80 -2.38 -0.02 1.35 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.18 7.68 -2.39 -0.02 1.16 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 2.11 7.98 -2.39 -0.02 2.09 16 48 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 49 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 50 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 51 H 0.06 2.59 6.43 -2.38 -0.02 2.58 16 52 H 0.04 1.16 7.92 -2.39 -0.02 1.14 16 Total: -1.00 -73.88 419.82 -1.20 -75.09 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.61 Total: 37.03 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.92 Total: 10.49 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -8.45 Total: -116.06 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.09 Total: -51.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.88 -1.20 -75.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494064007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.324 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds