Wall clock time and date at job start Tue Mar 31 2020 19:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 H 1.09002 * 115.54973 * 29.41636 * 3 2 1 5 5 C 1.53005 * 117.49874 * 243.74600 * 3 2 1 6 6 C 1.52999 * 59.99973 * 252.48565 * 5 3 2 7 7 H 1.08995 * 117.49529 * 107.48826 * 6 5 3 8 8 C 1.50693 * 117.50064 * 252.51042 * 6 5 3 9 9 O 1.21290 * 120.00028 * 68.62195 * 8 6 5 10 10 N 1.34778 * 120.00264 * 248.62816 * 8 6 5 11 11 C 1.46504 * 120.00338 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46959 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46644 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.27596 * 54.30115 * 13 12 11 15 15 C 1.54597 * 110.30853 * 292.20840 * 13 12 11 16 16 C 1.55100 * 102.84301 * 219.18984 * 15 13 12 17 17 N 1.48536 * 103.28850 * 37.30380 * 16 15 13 18 18 C 1.46894 * 111.00047 * 200.33402 * 17 16 15 19 19 C 1.50704 * 109.47280 * 287.39344 * 18 17 16 20 20 O 1.21299 * 119.99861 * 0.02562 * 19 18 17 21 21 N 1.34772 * 120.00365 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00437 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99767 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00653 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99683 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00640 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47352 * 89.99484 * 26 24 22 28 28 H 1.48493 * 109.47666 * 209.99795 * 26 24 22 29 29 H 1.48502 * 109.46917 * 329.99844 * 26 24 22 30 30 C 1.47896 * 105.81937 * 320.84652 * 17 16 15 31 31 H 1.09001 * 109.47451 * 300.00208 * 1 2 3 32 32 H 1.09000 * 109.47146 * 59.99856 * 1 2 3 33 33 H 1.09004 * 109.47539 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47451 * 239.99792 * 2 1 3 35 35 H 1.09000 * 109.47146 * 120.00144 * 2 1 3 36 36 H 1.09004 * 117.49602 * 359.97438 * 5 3 2 37 37 H 1.09004 * 117.49357 * 144.97247 * 5 3 2 38 38 H 0.97005 * 119.99370 * 359.97438 * 10 8 6 39 39 H 1.08995 * 109.47050 * 300.00082 * 11 10 8 40 40 H 1.08999 * 109.46969 * 59.99850 * 11 10 8 41 41 H 1.08997 * 109.47022 * 299.99523 * 12 11 10 42 42 H 1.08992 * 109.47146 * 59.99896 * 12 11 10 43 43 H 1.09000 * 110.72344 * 337.48717 * 15 13 12 44 44 H 1.08998 * 110.72551 * 100.77481 * 15 13 12 45 45 H 1.09000 * 110.59557 * 278.87030 * 16 15 13 46 46 H 1.08998 * 110.82783 * 155.85062 * 16 15 13 47 47 H 1.09001 * 109.47621 * 47.39824 * 18 17 16 48 48 H 1.09006 * 109.47252 * 167.39763 * 18 17 16 49 49 H 0.97000 * 120.00019 * 0.02562 * 21 19 18 50 50 H 0.96998 * 120.00137 * 180.02562 * 25 24 22 51 51 H 1.08994 * 109.91986 * 265.97816 * 30 17 16 52 52 H 1.09007 * 110.08009 * 144.76910 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 0.4830 5 6 2.8415 1.9084 -1.2172 6 6 3.5503 1.6583 0.1155 7 1 4.1808 0.7725 0.1916 8 6 4.0241 2.8621 0.8883 9 8 3.2177 3.6163 1.3903 10 7 5.3439 3.1007 1.0216 11 6 5.8045 4.2713 1.7724 12 6 7.3340 4.3079 1.7722 13 6 7.8150 5.5301 2.5569 14 1 7.3784 5.5336 3.5556 15 6 7.4459 6.8296 1.8053 16 6 8.6950 7.7222 2.0259 17 7 9.8216 6.7568 1.9534 18 6 11.0231 7.3003 2.6005 19 6 11.6119 8.3854 1.7362 20 8 11.0823 8.6776 0.6848 21 7 12.7268 9.0312 2.1315 22 6 13.2622 10.0187 1.3455 23 1 12.7906 10.2789 0.4093 24 6 14.4119 10.6842 1.7527 25 7 14.9860 10.3673 2.8916 26 14 15.1418 12.0292 0.6815 27 1 14.5499 13.3380 1.0582 28 1 16.6128 12.0759 0.8790 29 1 14.8428 11.7429 -0.7447 30 6 9.3525 5.5370 2.6458 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.0058 1.1871 -2.0177 37 1 2.7175 2.9437 -1.5351 38 1 5.9887 2.4973 0.6203 39 1 5.4190 5.1774 1.3052 40 1 5.4430 4.2099 2.7989 41 1 7.7192 3.4017 2.2398 42 1 7.6958 4.3691 0.7459 43 1 7.2960 6.6320 0.7439 44 1 6.5594 7.2893 2.2421 45 1 8.6583 8.1975 3.0061 46 1 8.7795 8.4718 1.2392 47 1 10.7563 7.7148 3.5727 48 1 11.7557 6.5042 2.7336 49 1 13.1505 8.7973 2.9721 50 1 15.7884 10.8321 3.1761 51 1 9.6638 5.5598 3.6901 52 1 9.7566 4.6504 2.1571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494064008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:27 Heat of formation + Delta-G solvation = -63.478911 kcal Electronic energy + Delta-G solvation = -27979.483094 eV Core-core repulsion = 23978.798324 eV Total energy + Delta-G solvation = -4000.684770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.36271 -39.30950 -37.85677 -37.43401 -35.55111 -33.92397 -33.04948 -32.44615 -31.20557 -29.99476 -28.37537 -26.53238 -24.93013 -24.22877 -23.91369 -22.58691 -21.14486 -20.98442 -20.56232 -19.81461 -19.16799 -17.85265 -17.61164 -16.42474 -16.12172 -15.92732 -15.53750 -15.18278 -15.01962 -14.78428 -14.50059 -14.44553 -14.32997 -14.08096 -13.72553 -13.40719 -13.00538 -12.93408 -12.73642 -12.61621 -12.56316 -12.30457 -12.11952 -11.79149 -11.68432 -11.48796 -11.47834 -11.39821 -11.17940 -10.98287 -10.81744 -10.77835 -10.71684 -10.50808 -10.49429 -10.37117 -10.19390 -10.05692 -9.46591 -9.35618 -8.43977 -7.95840 -7.89413 -6.39185 -3.79794 2.18903 2.78945 3.19329 3.27718 3.33787 3.40122 3.94527 4.07841 4.15368 4.30647 4.30939 4.35630 4.43691 4.64484 4.66782 4.71458 4.74600 4.87510 4.95409 5.02100 5.08949 5.17767 5.21988 5.27421 5.32833 5.41048 5.43496 5.44153 5.46877 5.53714 5.59334 5.63286 5.67117 5.69863 5.79636 5.84871 5.87328 5.92710 5.94551 5.97524 6.11875 6.15423 6.30360 6.31939 6.46727 7.18810 7.21941 7.28736 7.57531 7.93350 8.09306 8.65287 9.21235 9.57925 10.10329 10.78784 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.038293 B = 0.001400 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.022385 B =19996.620748 C =20268.819966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.123 0.877 8 C 0.541 3.459 9 O -0.542 6.542 10 N -0.726 5.726 11 C 0.118 3.882 12 C -0.120 4.120 13 C -0.094 4.094 14 H 0.076 0.924 15 C -0.120 4.120 16 C 0.040 3.960 17 N -0.492 5.492 18 C 0.037 3.963 19 C 0.446 3.554 20 O -0.577 6.577 21 N -0.567 5.567 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.039 3.961 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.087 0.913 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.042 0.958 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.980 -21.476 -1.185 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.214 4.214 7 H 0.141 0.859 8 C 0.327 3.673 9 O -0.419 6.419 10 N -0.377 5.377 11 C -0.005 4.005 12 C -0.158 4.158 13 C -0.113 4.113 14 H 0.094 0.906 15 C -0.158 4.158 16 C -0.087 4.087 17 N -0.216 5.216 18 C -0.095 4.095 19 C 0.231 3.769 20 O -0.460 6.460 21 N -0.204 5.204 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.756 3.244 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 C -0.089 4.089 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.060 0.940 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.571 -20.743 -1.973 30.719 hybrid contribution 1.153 0.436 0.884 1.517 sum -21.418 -20.308 -1.089 29.535 Atomic orbital electron populations 1.21741 0.95091 1.01706 1.02229 1.21158 0.96381 0.93548 1.02155 1.22493 0.91260 0.98797 1.01092 0.86407 1.23119 1.01848 1.03311 0.90265 1.22310 0.97865 0.98921 1.02345 0.85916 1.19680 0.82230 0.85578 0.79780 1.90708 1.54030 1.48702 1.48445 1.45968 1.07014 1.28841 1.55911 1.21445 0.94529 0.88135 0.96413 1.21858 0.93498 0.98495 1.01912 1.21918 0.95507 0.94761 0.99136 0.90602 1.22650 0.97536 0.94641 1.00959 1.23295 0.88935 0.95538 1.00973 1.64450 1.03183 1.03851 1.50080 1.22062 0.93706 0.98130 0.95624 1.19729 0.83506 0.85441 0.88220 1.90505 1.62474 1.68104 1.24948 1.41859 1.23466 1.33187 1.21861 1.19696 1.07607 1.11533 1.03889 0.87965 1.25242 0.96779 0.99152 0.96775 1.69616 1.21179 1.42646 1.21068 0.85868 0.77828 0.80541 0.80119 1.20464 1.20952 1.19426 1.22945 0.93691 0.95159 0.97142 0.92464 0.92464 0.92571 0.91614 0.91419 0.87710 0.88207 0.76424 0.91117 0.91582 0.91271 0.90445 0.90572 0.91279 0.94482 0.88493 0.93302 0.89487 0.77559 0.91941 0.93962 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.87 37.15 0.37 -0.35 16 2 C -0.10 -0.48 6.22 -26.73 -0.17 -0.65 16 3 C -0.12 -0.81 5.25 -90.62 -0.48 -1.29 16 4 H 0.12 1.04 7.60 -51.93 -0.39 0.64 16 5 C -0.15 -0.91 9.88 -26.73 -0.26 -1.17 16 6 C -0.19 -1.33 5.91 -91.77 -0.54 -1.87 16 7 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.54 5.38 7.61 -10.99 -0.08 5.30 16 9 O -0.54 -7.61 16.26 5.55 0.09 -7.52 16 10 N -0.73 -5.79 5.56 -60.29 -0.33 -6.13 16 11 C 0.12 1.05 5.53 -4.04 -0.02 1.03 16 12 C -0.12 -0.98 4.48 -26.73 -0.12 -1.10 16 13 C -0.09 -0.95 3.01 -89.26 -0.27 -1.22 16 14 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.12 -1.44 5.81 -24.78 -0.14 -1.58 16 16 C 0.04 0.64 5.94 -1.81 -0.01 0.63 16 17 N -0.49 -8.19 4.91 -231.78 -1.14 -9.33 16 18 C 0.04 0.66 5.19 -4.98 -0.03 0.64 16 19 C 0.45 10.66 7.61 -10.99 -0.08 10.58 16 20 O -0.58 -15.75 14.64 5.54 0.08 -15.67 16 21 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 22 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 24 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 25 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 26 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 30 C 0.04 0.48 6.32 -2.75 -0.02 0.46 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.27 7.88 -51.93 -0.41 -0.14 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.45 8.03 -51.93 -0.42 0.04 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.40 2.14 8.47 -40.82 -0.35 1.80 16 39 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 43 H 0.08 0.94 7.79 -51.93 -0.40 0.54 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.57 7.81 -51.93 -0.41 0.16 16 46 H 0.10 1.84 7.10 -51.93 -0.37 1.47 16 47 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16 48 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 49 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 51 H 0.04 0.49 7.77 -51.93 -0.40 0.08 16 52 H 0.08 0.90 7.68 -51.93 -0.40 0.50 16 LS Contribution 420.77 15.07 6.34 6.34 Total: -1.00 -33.82 420.77 -10.66 -44.48 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -9.24 Total: 8.85 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.10 Total: 1.37 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.81 Total: -54.02 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.82 -10.66 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494064008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.002 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds