Wall clock time and date at job start Tue Mar 31 2020 19:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 H 1.09002 * 115.54973 * 29.41636 * 3 2 1 5 5 C 1.53005 * 117.49874 * 243.74600 * 3 2 1 6 6 C 1.52999 * 59.99973 * 252.48565 * 5 3 2 7 7 H 1.08995 * 117.49529 * 107.48826 * 6 5 3 8 8 C 1.50693 * 117.50064 * 252.51042 * 6 5 3 9 9 O 1.21290 * 120.00028 * 68.62195 * 8 6 5 10 10 N 1.34778 * 120.00264 * 248.62816 * 8 6 5 11 11 C 1.46504 * 120.00338 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46959 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46644 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.27596 * 54.30115 * 13 12 11 15 15 C 1.54597 * 110.30853 * 292.20840 * 13 12 11 16 16 C 1.55100 * 102.84301 * 219.18984 * 15 13 12 17 17 N 1.48536 * 103.28850 * 37.30380 * 16 15 13 18 18 C 1.46894 * 111.00047 * 200.33402 * 17 16 15 19 19 C 1.50704 * 109.47280 * 287.39344 * 18 17 16 20 20 O 1.21299 * 119.99861 * 0.02562 * 19 18 17 21 21 N 1.34772 * 120.00365 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00437 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99767 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00653 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99683 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00640 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47352 * 89.99484 * 26 24 22 28 28 H 1.48493 * 109.47666 * 209.99795 * 26 24 22 29 29 H 1.48502 * 109.46917 * 329.99844 * 26 24 22 30 30 C 1.47896 * 105.81937 * 320.84652 * 17 16 15 31 31 H 1.09001 * 109.47451 * 300.00208 * 1 2 3 32 32 H 1.09000 * 109.47146 * 59.99856 * 1 2 3 33 33 H 1.09004 * 109.47539 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47451 * 239.99792 * 2 1 3 35 35 H 1.09000 * 109.47146 * 120.00144 * 2 1 3 36 36 H 1.09004 * 117.49602 * 359.97438 * 5 3 2 37 37 H 1.09004 * 117.49357 * 144.97247 * 5 3 2 38 38 H 0.97005 * 119.99370 * 359.97438 * 10 8 6 39 39 H 1.08995 * 109.47050 * 300.00082 * 11 10 8 40 40 H 1.08999 * 109.46969 * 59.99850 * 11 10 8 41 41 H 1.08997 * 109.47022 * 299.99523 * 12 11 10 42 42 H 1.08992 * 109.47146 * 59.99896 * 12 11 10 43 43 H 1.09000 * 110.72344 * 337.48717 * 15 13 12 44 44 H 1.08998 * 110.72551 * 100.77481 * 15 13 12 45 45 H 1.09000 * 110.59557 * 278.87030 * 16 15 13 46 46 H 1.08998 * 110.82783 * 155.85062 * 16 15 13 47 47 H 1.09001 * 109.47621 * 47.39824 * 18 17 16 48 48 H 1.09006 * 109.47252 * 167.39763 * 18 17 16 49 49 H 0.97000 * 120.00019 * 0.02562 * 21 19 18 50 50 H 0.96998 * 120.00137 * 180.02562 * 25 24 22 51 51 H 1.08994 * 109.91986 * 265.97816 * 30 17 16 52 52 H 1.09007 * 110.08009 * 144.76910 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 0.4830 5 6 2.8415 1.9084 -1.2172 6 6 3.5503 1.6583 0.1155 7 1 4.1808 0.7725 0.1916 8 6 4.0241 2.8621 0.8883 9 8 3.2177 3.6163 1.3903 10 7 5.3439 3.1007 1.0216 11 6 5.8045 4.2713 1.7724 12 6 7.3340 4.3079 1.7722 13 6 7.8150 5.5301 2.5569 14 1 7.3784 5.5336 3.5556 15 6 7.4459 6.8296 1.8053 16 6 8.6950 7.7222 2.0259 17 7 9.8216 6.7568 1.9534 18 6 11.0231 7.3003 2.6005 19 6 11.6119 8.3854 1.7362 20 8 11.0823 8.6776 0.6848 21 7 12.7268 9.0312 2.1315 22 6 13.2622 10.0187 1.3455 23 1 12.7906 10.2789 0.4093 24 6 14.4119 10.6842 1.7527 25 7 14.9860 10.3673 2.8916 26 14 15.1418 12.0292 0.6815 27 1 14.5499 13.3380 1.0582 28 1 16.6128 12.0759 0.8790 29 1 14.8428 11.7429 -0.7447 30 6 9.3525 5.5370 2.6458 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.0058 1.1871 -2.0177 37 1 2.7175 2.9437 -1.5351 38 1 5.9887 2.4973 0.6203 39 1 5.4190 5.1774 1.3052 40 1 5.4430 4.2099 2.7989 41 1 7.7192 3.4017 2.2398 42 1 7.6958 4.3691 0.7459 43 1 7.2960 6.6320 0.7439 44 1 6.5594 7.2893 2.2421 45 1 8.6583 8.1975 3.0061 46 1 8.7795 8.4718 1.2392 47 1 10.7563 7.7148 3.5727 48 1 11.7557 6.5042 2.7336 49 1 13.1505 8.7973 2.9721 50 1 15.7884 10.8321 3.1761 51 1 9.6638 5.5598 3.6901 52 1 9.7566 4.6504 2.1571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494064008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:26 Heat of formation + Delta-G solvation = -87.298031 kcal Electronic energy + Delta-G solvation = -27980.515969 eV Core-core repulsion = 23978.798324 eV Total energy + Delta-G solvation = -4001.717645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10073 -40.62492 -39.38315 -38.13609 -36.48191 -35.89001 -34.10981 -33.24446 -32.89168 -31.08945 -29.41602 -27.97520 -26.15852 -25.28041 -24.58831 -23.34887 -22.32388 -21.62848 -21.22033 -20.99392 -20.61734 -19.88137 -18.28665 -17.81834 -17.23276 -16.89486 -16.59643 -16.41824 -16.09402 -15.81645 -15.69274 -15.65190 -15.41757 -15.02004 -14.93032 -14.66395 -14.22946 -13.96371 -13.55547 -13.52292 -13.43878 -13.23659 -13.22563 -12.98703 -12.93390 -12.77902 -12.42444 -12.34922 -12.31137 -12.18727 -12.11651 -11.92760 -11.82126 -11.64704 -11.52027 -11.42701 -11.24843 -11.04676 -10.76058 -10.29565 -10.10098 -10.00135 -9.25979 -8.46307 -5.94926 1.37623 1.41145 1.46774 1.53978 2.06725 2.13688 2.28977 2.85936 2.87335 3.20363 3.41650 3.61817 3.63968 3.76026 3.77787 3.85805 3.90153 4.15012 4.23637 4.26946 4.28729 4.31763 4.35433 4.42440 4.48946 4.52814 4.57161 4.59982 4.65360 4.73621 4.78768 4.80718 4.93655 4.98114 4.99070 5.02413 5.07480 5.15904 5.19009 5.22530 5.25303 5.30007 5.39954 5.41190 5.44840 5.50593 5.89189 6.02260 6.14848 6.55112 6.61777 7.13815 7.24049 7.57428 8.13971 8.71278 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.038293 B = 0.001400 C = 0.001381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.022385 B =19996.620748 C =20268.819966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.140 4.140 6 C -0.192 4.192 7 H 0.152 0.848 8 C 0.533 3.467 9 O -0.592 6.592 10 N -0.714 5.714 11 C 0.121 3.879 12 C -0.106 4.106 13 C -0.085 4.085 14 H 0.093 0.907 15 C -0.112 4.112 16 C 0.037 3.963 17 N -0.516 5.516 18 C 0.049 3.951 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.575 5.575 22 C -0.333 4.333 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.274 1.274 30 C 0.039 3.961 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.417 0.583 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.057 0.943 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.662 -23.775 -0.866 32.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.145 4.145 4 H 0.108 0.892 5 C -0.177 4.177 6 C -0.213 4.213 7 H 0.170 0.830 8 C 0.321 3.679 9 O -0.473 6.473 10 N -0.365 5.365 11 C -0.002 4.002 12 C -0.144 4.144 13 C -0.105 4.105 14 H 0.111 0.889 15 C -0.150 4.150 16 C -0.090 4.090 17 N -0.241 5.241 18 C -0.082 4.082 19 C 0.228 3.772 20 O -0.503 6.503 21 N -0.213 5.213 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.199 1.199 30 C -0.088 4.088 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.103 0.897 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.128 0.872 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.223 -23.083 -1.640 32.084 hybrid contribution 1.022 1.164 0.782 1.735 sum -21.201 -21.919 -0.858 30.507 Atomic orbital electron populations 1.21754 0.95230 1.02222 1.01705 1.21150 0.96248 0.92212 1.03060 1.22475 0.91010 0.99426 1.01543 0.89163 1.23188 1.00845 1.03169 0.90504 1.22384 0.98153 0.98487 1.02243 0.82991 1.20268 0.82321 0.85933 0.79357 1.90685 1.55330 1.50587 1.50651 1.45886 1.06873 1.28614 1.55175 1.21333 0.95007 0.87832 0.96055 1.21735 0.92591 0.98502 1.01586 1.21891 0.94238 0.94313 1.00015 0.88903 1.22589 0.96184 0.95133 1.01071 1.23208 0.90804 0.95512 0.99520 1.64373 1.02928 1.05294 1.51478 1.21922 0.94792 0.96713 0.94803 1.20823 0.82433 0.85712 0.88202 1.90479 1.63325 1.69416 1.27034 1.41926 1.24216 1.33291 1.21880 1.19651 1.08960 1.13640 1.04044 0.90491 1.26008 0.96439 1.00746 0.97942 1.69674 1.21429 1.43282 1.21842 0.84945 0.77598 0.77824 0.78075 1.19688 1.19422 1.19850 1.23053 0.94882 0.93213 0.97696 0.93481 0.92589 0.91475 0.89959 0.91128 0.85123 0.89724 0.74595 0.92924 0.92017 0.88901 0.90860 0.91320 0.89954 0.94201 0.92767 0.91446 0.87243 0.77067 0.91321 0.92454 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.87 71.98 0.71 -0.61 16 2 C -0.09 -0.75 6.22 30.59 0.19 -0.56 16 3 C -0.13 -1.64 5.25 -10.79 -0.06 -1.70 16 4 H 0.09 1.70 7.60 -2.39 -0.02 1.68 16 5 C -0.14 -1.52 9.88 30.60 0.30 -1.21 16 6 C -0.19 -2.33 5.91 -11.54 -0.07 -2.40 16 7 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 8 C 0.53 10.27 7.61 87.65 0.67 10.93 16 9 O -0.59 -17.08 16.26 -3.06 -0.05 -17.13 16 10 N -0.71 -10.21 5.56 -463.06 -2.57 -12.78 16 11 C 0.12 1.98 5.53 86.38 0.48 2.46 16 12 C -0.11 -1.44 4.48 30.59 0.14 -1.31 16 13 C -0.09 -1.51 3.01 -9.91 -0.03 -1.54 16 14 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 15 C -0.11 -2.60 5.81 31.86 0.19 -2.41 16 16 C 0.04 1.20 5.94 86.71 0.51 1.71 16 17 N -0.52 -16.74 4.91 -887.22 -4.35 -21.09 16 18 C 0.05 1.74 5.19 85.56 0.44 2.18 16 19 C 0.44 21.53 7.61 87.66 0.67 22.19 16 20 O -0.62 -35.04 14.64 -3.09 -0.05 -35.09 16 21 N -0.58 -30.08 5.29 -306.98 -1.62 -31.70 16 22 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 23 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 24 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 25 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 26 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 30 C 0.04 0.84 6.32 86.45 0.55 1.39 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.44 7.88 -2.39 -0.02 0.42 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.13 0.74 8.03 -2.39 -0.02 0.72 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.42 3.33 8.47 -92.70 -0.79 2.54 16 39 H 0.05 1.06 7.53 -2.39 -0.02 1.05 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.11 8.03 -2.39 -0.02 1.09 16 43 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.22 7.81 -2.39 -0.02 1.21 16 46 H 0.05 2.18 7.10 -2.39 -0.02 2.16 16 47 H 0.07 2.14 7.83 -2.39 -0.02 2.12 16 48 H 0.11 3.37 8.08 -2.38 -0.02 3.35 16 49 H 0.40 19.58 7.90 -92.71 -0.73 18.84 16 50 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 51 H 0.06 1.11 7.77 -2.39 -0.02 1.09 16 52 H 0.09 1.77 7.68 -2.38 -0.02 1.75 16 Total: -1.00 -76.56 420.77 -0.97 -77.53 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.60 Total: 34.13 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 5.97 Total: 10.51 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -8.27 Total: -115.40 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.09 Total: -52.22 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.56 -0.97 -77.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494064008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.770 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds