Wall clock time and date at job start Tue Mar 31 2020 20:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 H 1.08997 * 109.46819 * 53.72249 * 3 2 1 5 5 C 1.50696 * 109.47062 * 173.72201 * 3 2 1 6 6 O 1.21284 * 119.99907 * 102.88153 * 5 3 2 7 7 N 1.34773 * 120.00538 * 282.88831 * 5 3 2 8 8 C 1.47025 * 125.64309 * 354.82089 * 7 5 3 9 9 C 1.54326 * 107.26973 * 181.04135 * 8 7 5 10 10 C 1.55155 * 102.94241 * 22.18768 * 9 8 7 11 11 H 1.09003 * 111.00096 * 82.57307 * 10 9 8 12 12 C 1.53002 * 111.00595 * 206.42465 * 10 9 8 13 13 N 1.46503 * 109.47233 * 287.19965 * 12 10 9 14 14 C 1.46496 * 120.00099 * 89.99389 * 13 12 10 15 15 C 1.36944 * 119.99973 * 270.00133 * 13 12 10 16 16 H 1.08000 * 119.99936 * 31.11187 * 15 13 12 17 17 C 1.38814 * 119.99931 * 211.11090 * 15 13 12 18 18 N 1.31617 * 119.99613 * 6.78836 * 17 15 13 19 19 Si 1.86798 * 119.99819 * 186.78519 * 17 15 13 20 20 H 1.48500 * 109.47239 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46729 * 120.00432 * 19 17 15 22 22 H 1.48496 * 109.47178 * 239.99885 * 19 17 15 23 23 C 1.47420 * 125.65330 * 174.79800 * 7 5 3 24 24 N 1.46498 * 109.47050 * 293.72294 * 3 2 1 25 25 C 1.46762 * 124.34745 * 119.72584 * 24 3 2 26 26 C 1.54665 * 105.38082 * 162.85609 * 25 24 3 27 27 C 1.54627 * 101.68397 * 25.76573 * 26 25 24 28 28 C 1.34418 * 124.34909 * 300.03104 * 24 3 2 29 29 O 1.21283 * 124.94247 * 0.41901 * 28 24 3 30 30 H 1.09005 * 109.46949 * 59.99912 * 1 2 3 31 31 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47199 * 300.00411 * 1 2 3 33 33 H 1.09000 * 109.47199 * 239.99589 * 2 1 3 34 34 H 1.09000 * 109.46487 * 120.00104 * 2 1 3 35 35 H 1.09004 * 109.88315 * 300.44973 * 8 7 5 36 36 H 1.08998 * 109.88633 * 61.62100 * 8 7 5 37 37 H 1.09001 * 110.72247 * 140.55544 * 9 8 7 38 38 H 1.08999 * 110.72112 * 263.82805 * 9 8 7 39 39 H 1.08994 * 109.46766 * 47.19910 * 12 10 9 40 40 H 1.08992 * 109.47159 * 167.20066 * 12 10 9 41 41 H 1.09001 * 109.46825 * 85.37431 * 14 13 12 42 42 H 1.09000 * 109.47354 * 205.37276 * 14 13 12 43 43 H 1.08998 * 109.47627 * 325.37419 * 14 13 12 44 44 H 0.97004 * 119.99960 * 180.02562 * 18 17 15 45 45 H 1.09006 * 110.36393 * 274.72845 * 23 7 5 46 46 H 1.09003 * 110.36780 * 37.04764 * 23 7 5 47 47 H 1.09003 * 110.24816 * 281.98205 * 25 24 3 48 48 H 1.08993 * 110.24375 * 43.98581 * 25 24 3 49 49 H 1.08995 * 111.19123 * 267.59272 * 26 25 24 50 50 H 1.09004 * 110.85387 * 143.79273 * 26 25 24 51 51 H 1.08995 * 110.48950 * 216.30774 * 27 26 25 52 52 H 1.09004 * 110.48683 * 93.66740 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5879 1.9877 0.8285 5 6 3.5390 1.4453 0.1554 6 8 4.2482 1.6431 -0.8084 7 7 4.0916 1.2279 1.3652 8 6 3.3556 1.0822 2.6296 9 6 4.4002 0.8754 3.7466 10 6 5.6901 1.4806 3.1324 11 1 5.7113 2.5633 3.2569 12 6 6.9396 0.8368 3.7368 13 7 7.1204 1.3157 5.1095 14 6 6.5065 0.5912 6.2249 15 6 7.8633 2.4408 5.3499 16 1 7.8953 3.2335 4.6171 17 6 8.5751 2.5623 6.5354 18 7 8.6454 1.5453 7.3679 19 14 9.4332 4.1691 6.9491 20 1 9.2024 5.1489 5.8573 21 1 8.8879 4.7082 8.2209 22 1 10.8907 3.9278 7.0984 23 6 5.5340 1.0963 1.6400 24 7 1.6790 2.0881 -1.2645 25 6 0.8314 3.2814 -1.3725 26 6 1.0878 3.8395 -2.7920 27 6 1.5274 2.5678 -3.5538 28 6 2.0765 1.6603 -2.4752 29 8 2.7739 0.6880 -2.6738 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.7756 1.9838 2.8269 36 1 2.6941 0.2176 2.5760 37 1 4.1124 1.4154 4.6486 38 1 4.5345 -0.1855 3.9574 39 1 6.8233 -0.2469 3.7424 40 1 7.8114 1.1056 3.1404 41 1 7.1649 -0.2191 6.5381 42 1 6.3490 1.2746 7.0594 43 1 5.5488 0.1789 5.9073 44 1 9.1425 1.6302 8.1966 45 1 5.8590 0.0686 1.4769 46 1 6.1040 1.7797 1.0105 47 1 -0.2179 3.0107 -1.2546 48 1 1.1186 4.0172 -0.6216 49 1 1.8834 4.5845 -2.7847 50 1 0.1732 4.2527 -3.2175 51 1 2.3025 2.8078 -4.2816 52 1 0.6727 2.1027 -4.0450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494179521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:24 Heat of formation + Delta-G solvation = -63.851527 kcal Electronic energy + Delta-G solvation = -30661.273162 eV Core-core repulsion = 26660.572234 eV Total energy + Delta-G solvation = -4000.700928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94384 -40.63680 -38.83669 -37.38329 -37.05960 -35.88151 -33.91365 -32.13651 -31.92648 -30.45997 -28.66443 -28.38020 -27.86693 -26.71878 -24.37897 -23.19545 -22.95057 -22.70479 -21.35596 -21.10243 -19.62368 -18.62218 -18.27770 -17.92630 -17.50842 -17.08870 -16.73193 -16.40261 -15.98661 -15.48369 -15.43367 -15.40438 -14.91986 -14.64707 -14.54245 -14.51753 -14.26059 -14.18097 -13.80523 -13.65556 -13.54243 -13.45293 -13.30747 -12.94053 -12.88120 -12.80596 -12.60111 -12.54657 -12.41298 -12.23942 -12.15219 -12.02810 -11.93419 -11.83775 -11.74059 -11.59796 -11.36080 -11.04137 -10.61849 -10.60450 -9.69122 -9.65417 -8.62898 -7.84961 -5.39177 1.44382 1.45353 1.46687 1.56265 1.57041 1.90290 2.22219 2.49716 3.29288 3.30694 3.49177 3.63398 3.64968 3.71360 3.83577 3.89913 3.91734 4.08739 4.14701 4.18795 4.28378 4.36615 4.44651 4.45842 4.59333 4.59635 4.66928 4.69247 4.77527 4.82871 4.85161 4.88200 4.97492 5.00654 5.05895 5.08668 5.10895 5.13149 5.22928 5.24434 5.28772 5.34667 5.36470 5.49101 5.58245 5.65009 5.72646 6.20444 6.38952 6.49161 7.06071 7.18678 7.31163 7.88453 8.34937 9.19018 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.002417 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.374064 B =11580.710587 C =12118.932495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.152 3.848 4 H 0.143 0.857 5 C 0.504 3.496 6 O -0.572 6.572 7 N -0.616 5.616 8 C 0.100 3.900 9 C -0.112 4.112 10 C -0.104 4.104 11 H 0.062 0.938 12 C 0.162 3.838 13 N -0.613 5.613 14 C 0.176 3.824 15 C -0.262 4.262 16 H 0.061 0.939 17 C -0.047 4.047 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.117 3.883 24 N -0.612 5.612 25 C 0.097 3.903 26 C -0.121 4.121 27 C -0.151 4.151 28 C 0.505 3.495 29 O -0.570 6.570 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.034 0.966 41 H -0.010 1.010 42 H 0.023 0.977 43 H 0.039 0.961 44 H 0.249 0.751 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.126 0.874 51 H 0.092 0.908 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.690 2.359 -15.493 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.045 3.955 4 H 0.161 0.839 5 C 0.292 3.708 6 O -0.450 6.450 7 N -0.351 5.351 8 C -0.021 4.021 9 C -0.150 4.150 10 C -0.126 4.126 11 H 0.080 0.920 12 C 0.035 3.965 13 N -0.336 5.336 14 C 0.031 3.969 15 C -0.393 4.393 16 H 0.079 0.921 17 C -0.242 4.242 18 N -0.582 5.582 19 Si 0.793 3.207 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.220 1.220 23 C -0.007 4.007 24 N -0.346 5.346 25 C -0.024 4.024 26 C -0.158 4.158 27 C -0.191 4.191 28 C 0.294 3.706 29 O -0.449 6.449 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.008 0.992 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.123 0.877 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.144 0.856 51 H 0.110 0.890 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.915 1.933 -15.961 29.652 hybrid contribution 1.633 0.558 0.507 1.798 sum -23.282 2.491 -15.454 28.055 Atomic orbital electron populations 1.21664 0.91892 1.02785 1.02946 1.21805 0.99016 0.93089 1.02902 1.20937 0.89016 0.97198 0.88300 0.83927 1.21385 0.92234 0.76030 0.81141 1.90726 1.64656 1.50212 1.39408 1.48635 1.08044 1.70866 1.07510 1.22366 0.95052 1.03269 0.81453 1.22597 0.93081 1.01813 0.97466 1.22807 0.97444 1.00277 0.92022 0.91952 1.20714 0.94480 0.96092 0.85205 1.43973 1.58512 1.29505 1.01580 1.20569 0.92770 0.94154 0.89412 1.19421 1.21298 0.95271 1.03311 0.92120 1.25933 0.98983 1.00242 0.99072 1.70179 1.45242 1.30918 1.11845 0.85240 0.77768 0.79887 0.77764 1.19325 1.21449 1.21990 1.22105 0.81760 1.00657 0.96143 1.48210 1.51025 1.30767 1.04590 1.22511 0.95429 0.85355 0.99141 1.22662 1.04282 0.95589 0.93301 1.22367 1.03457 0.96487 0.96804 1.21631 0.78296 0.84776 0.85873 1.90678 1.38645 1.30574 1.84960 0.92737 0.91820 0.90015 0.93573 0.89514 0.89317 0.88640 0.89849 0.90215 0.93049 0.94780 0.99190 0.95851 0.94226 0.94175 0.91532 0.93056 0.87698 0.89510 0.90697 0.85593 0.88953 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.81 71.98 0.71 -0.82 16 2 C -0.13 -2.39 5.33 30.60 0.16 -2.23 16 3 C 0.15 3.04 2.07 44.24 0.09 3.13 16 4 H 0.14 1.76 7.50 -2.39 -0.02 1.74 16 5 C 0.50 15.16 6.98 87.66 0.61 15.77 16 6 O -0.57 -23.34 14.42 16.91 0.24 -23.10 16 7 N -0.62 -16.81 3.33 -811.79 -2.70 -19.51 16 8 C 0.10 1.94 6.16 86.73 0.53 2.47 16 9 C -0.11 -2.80 5.00 31.78 0.16 -2.64 16 10 C -0.10 -3.38 3.26 -9.40 -0.03 -3.41 16 11 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 12 C 0.16 6.44 5.19 86.38 0.45 6.88 16 13 N -0.61 -29.86 2.87 -726.95 -2.09 -31.95 16 14 C 0.18 8.25 8.84 127.77 1.13 9.38 16 15 C -0.26 -14.30 9.58 84.03 0.80 -13.50 16 16 H 0.06 3.28 7.84 -2.91 -0.02 3.26 16 17 C -0.05 -2.61 5.15 84.86 0.44 -2.17 16 18 N -0.94 -55.09 10.96 21.65 0.24 -54.86 16 19 Si 0.97 44.99 29.56 68.60 2.03 47.02 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 C 0.12 3.70 6.40 86.85 0.56 4.26 16 24 N -0.61 -11.89 2.25 -797.85 -1.79 -13.68 16 25 C 0.10 0.88 7.31 86.90 0.64 1.52 16 26 C -0.12 -0.96 7.19 31.72 0.23 -0.74 16 27 C -0.15 -2.23 6.86 30.59 0.21 -2.02 16 28 C 0.50 13.06 6.70 87.90 0.59 13.65 16 29 O -0.57 -21.35 14.78 16.91 0.25 -21.10 16 30 H 0.05 0.63 7.79 -2.38 -0.02 0.61 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 1.24 6.59 -2.39 -0.02 1.23 16 34 H 0.09 1.42 6.59 -2.39 -0.02 1.41 16 35 H 0.09 1.35 7.99 -2.38 -0.02 1.33 16 36 H 0.10 1.34 6.69 -2.39 -0.02 1.33 16 37 H 0.08 2.15 7.98 -2.39 -0.02 2.13 16 38 H 0.08 1.93 7.63 -2.39 -0.02 1.91 16 39 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 40 H 0.03 1.44 8.04 -2.39 -0.02 1.42 16 41 H -0.01 -0.53 7.75 -2.39 -0.02 -0.55 16 42 H 0.02 1.19 7.09 -2.39 -0.02 1.17 16 43 H 0.04 1.50 6.32 -2.39 -0.02 1.48 16 44 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 45 H 0.07 2.08 8.04 -2.38 -0.02 2.06 16 46 H 0.05 1.84 7.99 -2.39 -0.02 1.82 16 47 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -83.20 402.62 4.34 -78.86 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.89 Total: 8.77 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: 7.27 Total: 29.54 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -6.34 Total: -119.99 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: 0.49 Total: -44.20 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -83.20 4.34 -78.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.012 kcal (2) G-P(sol) polarization free energy of solvation -83.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds