Wall clock time and date at job start Tue Mar 31 2020 20:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46970 * 2 1 4 4 H 1.09002 * 109.46963 * 55.27507 * 3 2 1 5 5 C 1.50692 * 109.47405 * 175.27975 * 3 2 1 6 6 O 1.21287 * 120.00199 * 96.39993 * 5 3 2 7 7 N 1.34772 * 120.00248 * 276.40362 * 5 3 2 8 8 C 1.47029 * 125.64537 * 5.23486 * 7 5 3 9 9 C 1.54326 * 107.27063 * 178.90816 * 8 7 5 10 10 C 1.55154 * 102.94181 * 337.80556 * 9 8 7 11 11 H 1.09003 * 111.04166 * 277.41690 * 10 9 8 12 12 C 1.53004 * 111.00459 * 153.57525 * 10 9 8 13 13 N 1.46509 * 109.46652 * 72.80443 * 12 10 9 14 14 C 1.46498 * 119.99706 * 90.00364 * 13 12 10 15 15 C 1.36925 * 120.00036 * 269.99687 * 13 12 10 16 16 H 1.08004 * 120.00107 * 142.63322 * 15 13 12 17 17 C 1.38821 * 120.00394 * 322.63558 * 15 13 12 18 18 N 1.31618 * 119.99994 * 159.76211 * 17 15 13 19 19 Si 1.86790 * 119.99714 * 339.76392 * 17 15 13 20 20 H 1.48497 * 109.47371 * 95.35717 * 19 17 15 21 21 H 1.48501 * 109.47016 * 215.35729 * 19 17 15 22 22 H 1.48500 * 109.47309 * 335.35428 * 19 17 15 23 23 C 1.47427 * 125.65207 * 185.19582 * 7 5 3 24 24 N 1.46505 * 109.46861 * 295.27902 * 3 2 1 25 25 C 1.46762 * 124.34807 * 120.00205 * 24 3 2 26 26 C 1.54480 * 105.47324 * 197.01581 * 25 24 3 27 27 C 1.54630 * 101.76347 * 334.58439 * 26 25 24 28 28 C 1.34416 * 124.35147 * 299.69897 * 24 3 2 29 29 O 1.21279 * 124.93995 * 359.58057 * 28 24 3 30 30 H 1.09003 * 109.47236 * 299.99807 * 1 2 3 31 31 H 1.08993 * 109.47459 * 60.00287 * 1 2 3 32 32 H 1.09003 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47265 * 240.00197 * 2 1 3 34 34 H 1.08997 * 109.47237 * 119.99248 * 2 1 3 35 35 H 1.08999 * 109.88538 * 298.32636 * 8 7 5 36 36 H 1.09002 * 109.88022 * 59.33450 * 8 7 5 37 37 H 1.09000 * 110.72035 * 219.44635 * 9 8 7 38 38 H 1.08994 * 110.72348 * 96.17103 * 9 8 7 39 39 H 1.08999 * 109.46866 * 312.80751 * 12 10 9 40 40 H 1.08998 * 109.47488 * 192.80146 * 12 10 9 41 41 H 1.08999 * 109.47125 * 85.11292 * 14 13 12 42 42 H 1.08997 * 109.47408 * 325.11402 * 14 13 12 43 43 H 1.09001 * 109.47351 * 205.11205 * 14 13 12 44 44 H 0.96997 * 120.00001 * 180.02562 * 18 17 15 45 45 H 1.08996 * 110.36311 * 85.32733 * 23 7 5 46 46 H 1.08999 * 110.45973 * 323.05086 * 23 7 5 47 47 H 1.09004 * 110.24787 * 316.01202 * 25 24 3 48 48 H 1.09001 * 110.25085 * 77.92784 * 25 24 3 49 49 H 1.09004 * 110.97075 * 92.70352 * 26 25 24 50 50 H 1.09002 * 110.97442 * 216.42813 * 26 25 24 51 51 H 1.09004 * 110.48658 * 143.47592 * 27 26 25 52 52 H 1.09002 * 110.48315 * 265.98561 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6091 1.9802 0.8447 5 6 3.5424 1.4442 0.1169 6 8 4.2281 1.5333 -0.8795 7 7 4.1241 1.3467 1.3287 8 6 3.4216 1.1248 2.6011 9 6 4.4927 1.0561 3.7099 10 6 5.7785 0.6780 2.9282 11 1 5.8298 -0.3971 2.7559 12 6 7.0291 1.1740 3.6567 13 7 7.2608 0.3498 4.8456 14 6 8.0911 -0.8535 4.7522 15 6 6.7013 0.7043 6.0440 16 1 6.3313 -0.0579 6.7138 17 6 6.6096 2.0434 6.3982 18 7 5.7480 2.4234 7.3178 19 14 7.7090 3.3060 5.5698 20 1 6.9798 3.9297 4.4365 21 1 8.0869 4.3538 6.5519 22 1 8.9345 2.6383 5.0623 23 6 5.5703 1.4440 1.5979 24 7 1.6466 2.0995 -1.2490 25 6 0.8014 3.2969 -1.3243 26 6 0.3064 3.3608 -2.7862 27 6 1.4203 2.5883 -3.5302 28 6 2.0182 1.6864 -2.4730 29 8 2.7273 0.7284 -2.6972 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.7383 1.9512 2.7964 36 1 2.8669 0.1874 2.5596 37 1 4.2440 0.2851 4.4392 38 1 4.6077 2.0251 4.1956 39 1 6.8872 2.2123 3.9564 40 1 7.8896 1.1021 2.9915 41 1 9.1402 -0.5809 4.8673 42 1 7.9423 -1.3231 3.7799 43 1 7.8088 -1.5519 5.5401 44 1 5.6836 3.3591 7.5650 45 1 5.8658 2.4871 1.7107 46 1 6.1396 0.9738 0.7961 47 1 -0.0448 3.2048 -0.6433 48 1 1.3841 4.1859 -1.0828 49 1 -0.6553 2.8594 -2.8948 50 1 0.2476 4.3923 -3.1335 51 1 0.9977 1.9988 -4.3439 52 1 2.1736 3.2779 -3.9112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494179522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:28 Heat of formation + Delta-G solvation = -34.792432 kcal Electronic energy + Delta-G solvation = -31203.310394 eV Core-core repulsion = 27203.869563 eV Total energy + Delta-G solvation = -3999.440831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96566 -39.48990 -37.51676 -36.40526 -35.52488 -34.98041 -31.93085 -31.30231 -31.19760 -29.11278 -27.84458 -27.59338 -26.31553 -25.21493 -23.00746 -22.31333 -22.15320 -21.24697 -20.17538 -19.89678 -18.58112 -17.46494 -16.98079 -16.78717 -16.34331 -15.68438 -15.43704 -15.29003 -14.95592 -14.47014 -14.23807 -13.95961 -13.82093 -13.47450 -13.40649 -13.31395 -13.16137 -13.06306 -12.81684 -12.66676 -12.57329 -12.32365 -12.11098 -11.94219 -11.81499 -11.80127 -11.48560 -11.42528 -11.31467 -11.14907 -10.97256 -10.80414 -10.52354 -10.33493 -10.16951 -9.87012 -9.75161 -9.59828 -9.51251 -8.74303 -8.57148 -8.40584 -6.85887 -6.03427 -3.45065 2.47012 2.71127 2.79919 3.25077 3.29970 3.43511 3.48504 4.13474 4.18827 4.45060 4.47329 4.51627 4.66956 4.72307 4.83793 4.86602 5.02407 5.05627 5.15933 5.17483 5.23251 5.29518 5.37556 5.40091 5.44813 5.47842 5.54062 5.56550 5.65128 5.66516 5.76890 5.84864 5.86778 5.98063 6.04414 6.18441 6.24934 6.28009 6.30617 6.40708 6.47651 6.57206 6.67871 6.70326 6.85211 6.96507 7.05370 7.69728 8.01046 8.17657 8.32523 8.35537 8.93861 9.66867 10.08449 11.11987 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002892 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.572365 B = 9681.090885 C = 9755.086207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.150 3.850 4 H 0.107 0.893 5 C 0.512 3.488 6 O -0.518 6.518 7 N -0.615 5.615 8 C 0.093 3.907 9 C -0.103 4.103 10 C -0.112 4.112 11 H 0.077 0.923 12 C 0.148 3.852 13 N -0.612 5.612 14 C 0.125 3.875 15 C -0.263 4.263 16 H 0.079 0.921 17 C 0.037 3.963 18 N -0.901 5.901 19 Si 0.875 3.125 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.271 1.271 23 C 0.109 3.891 24 N -0.611 5.611 25 C 0.103 3.897 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.521 3.479 29 O -0.502 6.502 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.006 0.994 42 H 0.026 0.974 43 H 0.045 0.955 44 H 0.262 0.738 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.099 0.901 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.363 1.169 -16.621 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.043 3.957 4 H 0.125 0.875 5 C 0.298 3.702 6 O -0.393 6.393 7 N -0.350 5.350 8 C -0.030 4.030 9 C -0.141 4.141 10 C -0.133 4.133 11 H 0.095 0.905 12 C 0.022 3.978 13 N -0.335 5.335 14 C -0.021 4.021 15 C -0.391 4.391 16 H 0.097 0.903 17 C -0.163 4.163 18 N -0.543 5.543 19 Si 0.706 3.294 20 H -0.214 1.214 21 H -0.231 1.231 22 H -0.196 1.196 23 C -0.014 4.014 24 N -0.348 5.348 25 C -0.020 4.020 26 C -0.167 4.167 27 C -0.196 4.196 28 C 0.309 3.691 29 O -0.375 6.375 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.025 0.975 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.108 0.892 51 H 0.117 0.883 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.667 0.776 -17.184 21.970 hybrid contribution 0.570 1.038 -0.163 1.195 sum -13.097 1.813 -17.347 21.811 Atomic orbital electron populations 1.21695 0.94563 1.02046 1.01780 1.21833 0.96918 0.94111 1.04398 1.20808 0.91960 0.95791 0.87099 0.87543 1.20498 0.90266 0.77314 0.82163 1.90757 1.64673 1.48575 1.35262 1.48580 1.08727 1.71470 1.06253 1.22313 0.96519 1.00309 0.83820 1.22480 0.92126 1.04171 0.95307 1.23004 0.98047 0.99751 0.92536 0.90471 1.21085 0.93269 0.95262 0.88225 1.44033 1.56593 1.27580 1.05333 1.21076 0.93152 0.89339 0.98490 1.18771 1.33179 0.92293 0.94885 0.90323 1.25409 0.97375 0.97346 0.96199 1.69836 1.34231 1.16495 1.33709 0.86984 0.83086 0.81453 0.77843 1.21419 1.23059 1.19550 1.22334 0.80571 1.00497 0.97989 1.48002 1.51952 1.29426 1.05381 1.22097 0.94245 0.87627 0.98021 1.22562 0.98489 1.01851 0.93799 1.22324 0.99387 0.99608 0.98235 1.20705 0.79695 0.84857 0.83885 1.90733 1.35461 1.28143 1.83192 0.92515 0.92688 0.92228 0.89750 0.90193 0.91918 0.91738 0.89189 0.90104 0.92719 0.93992 0.97535 0.95487 0.93579 0.92766 0.91842 0.90900 0.90257 0.91226 0.89969 0.89219 0.88275 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.80 37.16 0.36 -0.85 16 2 C -0.13 -1.52 5.34 -26.73 -0.14 -1.67 16 3 C 0.15 1.84 2.11 -69.08 -0.15 1.69 16 4 H 0.11 1.06 7.33 -51.93 -0.38 0.68 16 5 C 0.51 8.40 7.00 -10.99 -0.08 8.32 16 6 O -0.52 -10.58 14.21 -16.52 -0.23 -10.82 16 7 N -0.62 -9.78 3.33 -170.51 -0.57 -10.34 16 8 C 0.09 1.31 6.26 -3.06 -0.02 1.29 16 9 C -0.10 -1.81 5.73 -24.90 -0.14 -1.95 16 10 C -0.11 -1.99 3.26 -88.47 -0.29 -2.28 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.15 3.06 4.03 -4.04 -0.02 3.04 16 13 N -0.61 -13.91 2.48 -181.11 -0.45 -14.36 16 14 C 0.12 2.43 10.70 59.85 0.64 3.07 16 15 C -0.26 -6.89 9.24 -15.06 -0.14 -7.03 16 16 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 17 C 0.04 1.00 5.34 -17.43 -0.09 0.91 16 18 N -0.90 -25.89 13.97 55.49 0.78 -25.11 16 19 Si 0.88 21.60 24.88 -169.99 -4.23 17.37 16 20 H -0.29 -6.81 6.70 56.52 0.38 -6.43 16 21 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.11 1.86 6.40 -2.53 -0.02 1.85 16 24 N -0.61 -6.97 2.22 -166.16 -0.37 -7.34 16 25 C 0.10 0.74 7.30 -3.12 -0.02 0.72 16 26 C -0.13 -0.69 7.18 -25.10 -0.18 -0.88 16 27 C -0.16 -1.32 6.86 -26.74 -0.18 -1.50 16 28 C 0.52 7.05 6.79 -10.86 -0.07 6.98 16 29 O -0.50 -9.20 14.57 -16.51 -0.24 -9.44 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.46 7.74 -51.93 -0.40 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.20 6.68 -51.93 -0.35 0.86 16 34 H 0.08 0.88 6.81 -51.93 -0.35 0.52 16 35 H 0.06 0.78 7.80 -51.93 -0.41 0.37 16 36 H 0.06 0.79 6.86 -51.93 -0.36 0.44 16 37 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.08 1.63 7.91 -51.93 -0.41 1.22 16 39 H 0.06 1.24 2.90 -51.93 -0.15 1.09 16 40 H 0.04 0.80 8.07 -51.93 -0.42 0.39 16 41 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 43 H 0.05 0.87 8.00 -51.93 -0.42 0.46 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 46 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 47 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -34.40 400.07 -8.95 -43.35 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -9.13 Total: -1.04 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -0.54 Total: 11.70 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.61 Total: -57.15 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.48 Total: -20.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.23 Total: 17.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.40 -8.95 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.559 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds