Wall clock time and date at job start Tue Mar 31 2020 20:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46970 * 2 1 4 4 H 1.09002 * 109.46963 * 55.27507 * 3 2 1 5 5 C 1.50692 * 109.47405 * 175.27975 * 3 2 1 6 6 O 1.21287 * 120.00199 * 96.39993 * 5 3 2 7 7 N 1.34772 * 120.00248 * 276.40362 * 5 3 2 8 8 C 1.47029 * 125.64537 * 5.23486 * 7 5 3 9 9 C 1.54326 * 107.27063 * 178.90816 * 8 7 5 10 10 C 1.55154 * 102.94181 * 337.80556 * 9 8 7 11 11 H 1.09003 * 111.04166 * 277.41690 * 10 9 8 12 12 C 1.53004 * 111.00459 * 153.57525 * 10 9 8 13 13 N 1.46509 * 109.46652 * 72.80443 * 12 10 9 14 14 C 1.46498 * 119.99706 * 90.00364 * 13 12 10 15 15 C 1.36925 * 120.00036 * 269.99687 * 13 12 10 16 16 H 1.08004 * 120.00107 * 142.63322 * 15 13 12 17 17 C 1.38821 * 120.00394 * 322.63558 * 15 13 12 18 18 N 1.31618 * 119.99994 * 159.76211 * 17 15 13 19 19 Si 1.86790 * 119.99714 * 339.76392 * 17 15 13 20 20 H 1.48497 * 109.47371 * 95.35717 * 19 17 15 21 21 H 1.48501 * 109.47016 * 215.35729 * 19 17 15 22 22 H 1.48500 * 109.47309 * 335.35428 * 19 17 15 23 23 C 1.47427 * 125.65207 * 185.19582 * 7 5 3 24 24 N 1.46505 * 109.46861 * 295.27902 * 3 2 1 25 25 C 1.46762 * 124.34807 * 120.00205 * 24 3 2 26 26 C 1.54480 * 105.47324 * 197.01581 * 25 24 3 27 27 C 1.54630 * 101.76347 * 334.58439 * 26 25 24 28 28 C 1.34416 * 124.35147 * 299.69897 * 24 3 2 29 29 O 1.21279 * 124.93995 * 359.58057 * 28 24 3 30 30 H 1.09003 * 109.47236 * 299.99807 * 1 2 3 31 31 H 1.08993 * 109.47459 * 60.00287 * 1 2 3 32 32 H 1.09003 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47265 * 240.00197 * 2 1 3 34 34 H 1.08997 * 109.47237 * 119.99248 * 2 1 3 35 35 H 1.08999 * 109.88538 * 298.32636 * 8 7 5 36 36 H 1.09002 * 109.88022 * 59.33450 * 8 7 5 37 37 H 1.09000 * 110.72035 * 219.44635 * 9 8 7 38 38 H 1.08994 * 110.72348 * 96.17103 * 9 8 7 39 39 H 1.08999 * 109.46866 * 312.80751 * 12 10 9 40 40 H 1.08998 * 109.47488 * 192.80146 * 12 10 9 41 41 H 1.08999 * 109.47125 * 85.11292 * 14 13 12 42 42 H 1.08997 * 109.47408 * 325.11402 * 14 13 12 43 43 H 1.09001 * 109.47351 * 205.11205 * 14 13 12 44 44 H 0.96997 * 120.00001 * 180.02562 * 18 17 15 45 45 H 1.08996 * 110.36311 * 85.32733 * 23 7 5 46 46 H 1.08999 * 110.45973 * 323.05086 * 23 7 5 47 47 H 1.09004 * 110.24787 * 316.01202 * 25 24 3 48 48 H 1.09001 * 110.25085 * 77.92784 * 25 24 3 49 49 H 1.09004 * 110.97075 * 92.70352 * 26 25 24 50 50 H 1.09002 * 110.97442 * 216.42813 * 26 25 24 51 51 H 1.09004 * 110.48658 * 143.47592 * 27 26 25 52 52 H 1.09002 * 110.48315 * 265.98561 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6091 1.9802 0.8447 5 6 3.5424 1.4442 0.1169 6 8 4.2281 1.5333 -0.8795 7 7 4.1241 1.3467 1.3287 8 6 3.4216 1.1248 2.6011 9 6 4.4927 1.0561 3.7099 10 6 5.7785 0.6780 2.9282 11 1 5.8298 -0.3971 2.7559 12 6 7.0291 1.1740 3.6567 13 7 7.2608 0.3498 4.8456 14 6 8.0911 -0.8535 4.7522 15 6 6.7013 0.7043 6.0440 16 1 6.3313 -0.0579 6.7138 17 6 6.6096 2.0434 6.3982 18 7 5.7480 2.4234 7.3178 19 14 7.7090 3.3060 5.5698 20 1 6.9798 3.9297 4.4365 21 1 8.0869 4.3538 6.5519 22 1 8.9345 2.6383 5.0623 23 6 5.5703 1.4440 1.5979 24 7 1.6466 2.0995 -1.2490 25 6 0.8014 3.2969 -1.3243 26 6 0.3064 3.3608 -2.7862 27 6 1.4203 2.5883 -3.5302 28 6 2.0182 1.6864 -2.4730 29 8 2.7273 0.7284 -2.6972 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.7383 1.9512 2.7964 36 1 2.8669 0.1874 2.5596 37 1 4.2440 0.2851 4.4392 38 1 4.6077 2.0251 4.1956 39 1 6.8872 2.2123 3.9564 40 1 7.8896 1.1021 2.9915 41 1 9.1402 -0.5809 4.8673 42 1 7.9423 -1.3231 3.7799 43 1 7.8088 -1.5519 5.5401 44 1 5.6836 3.3591 7.5650 45 1 5.8658 2.4871 1.7107 46 1 6.1396 0.9738 0.7961 47 1 -0.0448 3.2048 -0.6433 48 1 1.3841 4.1859 -1.0828 49 1 -0.6553 2.8594 -2.8948 50 1 0.2476 4.3923 -3.1335 51 1 0.9977 1.9988 -4.3439 52 1 2.1736 3.2779 -3.9112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494179522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:27 Heat of formation + Delta-G solvation = -55.711367 kcal Electronic energy + Delta-G solvation = -31204.217507 eV Core-core repulsion = 27203.869563 eV Total energy + Delta-G solvation = -4000.347944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96229 -40.67602 -38.95590 -37.39092 -37.19166 -35.85051 -33.82704 -32.81236 -31.97934 -30.47136 -28.82764 -28.40999 -27.99764 -26.74201 -24.27661 -23.19664 -23.04441 -22.70558 -21.56314 -21.16172 -19.65038 -18.83658 -18.48946 -17.85038 -17.30684 -17.06256 -16.95288 -16.47474 -16.01794 -15.79066 -15.51700 -15.26831 -15.15417 -14.75899 -14.58507 -14.42763 -14.28058 -14.18897 -13.95914 -13.81152 -13.73266 -13.60450 -13.35312 -13.27937 -13.22047 -12.88982 -12.70296 -12.52210 -12.42041 -12.22787 -12.17090 -12.04856 -11.94426 -11.80383 -11.71532 -11.61191 -11.28749 -11.05190 -10.61890 -10.59854 -9.76526 -9.62596 -8.74901 -8.14806 -5.52662 1.27861 1.39917 1.41587 1.49781 1.60142 1.83532 2.22016 2.42442 3.06192 3.24785 3.38855 3.52278 3.66793 3.71698 3.81696 3.84440 3.90305 4.00467 4.06825 4.16552 4.27887 4.32118 4.37864 4.42924 4.48218 4.53086 4.65616 4.67844 4.68475 4.73904 4.75222 4.78108 4.87138 4.88611 4.99952 5.02997 5.09709 5.10296 5.11329 5.13296 5.16189 5.23454 5.31807 5.35250 5.46410 5.56686 5.98224 6.20567 6.21012 6.44702 7.00228 7.02750 7.31278 7.65684 8.09291 9.04272 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002892 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.572365 B = 9681.090885 C = 9755.086207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.152 3.848 4 H 0.139 0.861 5 C 0.505 3.495 6 O -0.565 6.565 7 N -0.616 5.616 8 C 0.102 3.898 9 C -0.099 4.099 10 C -0.102 4.102 11 H 0.082 0.918 12 C 0.144 3.856 13 N -0.624 5.624 14 C 0.123 3.877 15 C -0.245 4.245 16 H 0.048 0.952 17 C -0.004 4.004 18 N -0.940 5.940 19 Si 0.926 3.074 20 H -0.275 1.275 21 H -0.312 1.312 22 H -0.268 1.268 23 C 0.114 3.886 24 N -0.612 5.612 25 C 0.094 3.906 26 C -0.113 4.113 27 C -0.152 4.152 28 C 0.503 3.497 29 O -0.565 6.565 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.036 0.964 40 H 0.059 0.941 41 H 0.012 0.988 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.261 0.739 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.108 0.892 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.115 0.885 51 H 0.109 0.891 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.498 2.054 -17.809 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.045 3.955 4 H 0.156 0.844 5 C 0.293 3.707 6 O -0.443 6.443 7 N -0.350 5.350 8 C -0.020 4.020 9 C -0.137 4.137 10 C -0.123 4.123 11 H 0.100 0.900 12 C 0.019 3.981 13 N -0.348 5.348 14 C -0.022 4.022 15 C -0.375 4.375 16 H 0.066 0.934 17 C -0.201 4.201 18 N -0.585 5.585 19 Si 0.757 3.243 20 H -0.203 1.203 21 H -0.241 1.241 22 H -0.193 1.193 23 C -0.010 4.010 24 N -0.346 5.346 25 C -0.028 4.028 26 C -0.151 4.151 27 C -0.192 4.192 28 C 0.292 3.708 29 O -0.443 6.443 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.126 0.874 48 H 0.089 0.911 49 H 0.119 0.881 50 H 0.133 0.867 51 H 0.127 0.873 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.830 1.678 -18.374 24.311 hybrid contribution 1.278 0.678 0.220 1.463 sum -14.552 2.356 -18.154 23.385 Atomic orbital electron populations 1.21651 0.91892 1.02784 1.02916 1.21780 0.99080 0.93134 1.02741 1.20910 0.88819 0.97015 0.88775 0.84372 1.21371 0.92070 0.75969 0.81288 1.90740 1.66114 1.50668 1.36734 1.48661 1.08230 1.71165 1.06953 1.22326 0.95467 1.02743 0.81456 1.22307 0.93411 1.01971 0.96010 1.22797 0.96979 0.99893 0.92673 0.89992 1.21122 0.95191 0.93954 0.87874 1.44172 1.57179 1.28641 1.04856 1.21177 0.92790 0.88125 1.00065 1.18595 1.31906 0.91451 0.95549 0.93446 1.25803 0.98364 0.98858 0.97105 1.69930 1.35959 1.16732 1.35838 0.86159 0.81650 0.79473 0.77068 1.20269 1.24107 1.19330 1.22158 0.81811 0.99914 0.97115 1.48231 1.51667 1.30215 1.04503 1.22464 0.94500 0.85770 1.00022 1.22611 0.97748 1.02989 0.91734 1.22366 1.00375 0.99102 0.97393 1.21654 0.78942 0.84562 0.85630 1.90689 1.38278 1.30953 1.84338 0.90287 0.92497 0.91800 0.93393 0.89913 0.89311 0.89284 0.90613 0.92912 0.94603 0.92311 0.96967 0.92779 0.93630 0.92930 0.92337 0.91586 0.87384 0.91061 0.88139 0.86678 0.87316 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.80 71.98 0.71 -1.18 16 2 C -0.13 -2.73 5.34 30.60 0.16 -2.57 16 3 C 0.15 3.41 2.11 44.24 0.09 3.50 16 4 H 0.14 2.19 7.33 -2.39 -0.02 2.17 16 5 C 0.50 16.24 7.00 87.66 0.61 16.85 16 6 O -0.56 -23.55 14.21 18.05 0.26 -23.29 16 7 N -0.62 -18.82 3.33 -811.77 -2.70 -21.52 16 8 C 0.10 2.63 6.26 86.73 0.54 3.17 16 9 C -0.10 -3.41 5.73 31.78 0.18 -3.23 16 10 C -0.10 -3.55 3.26 -9.40 -0.03 -3.58 16 11 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 12 C 0.14 5.81 4.03 86.38 0.35 6.16 16 13 N -0.62 -27.93 2.48 -726.92 -1.80 -29.74 16 14 C 0.12 4.60 10.70 127.77 1.37 5.97 16 15 C -0.25 -12.98 9.24 84.04 0.78 -12.20 16 16 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 17 C 0.00 -0.24 5.34 84.86 0.45 0.22 16 18 N -0.94 -55.01 13.97 21.65 0.30 -54.71 16 19 Si 0.93 44.79 24.88 68.60 1.71 46.50 16 20 H -0.28 -12.69 6.70 99.48 0.67 -12.02 16 21 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 C 0.11 3.82 6.40 86.86 0.56 4.37 16 24 N -0.61 -12.82 2.22 -798.20 -1.77 -14.59 16 25 C 0.09 1.00 7.30 86.83 0.63 1.64 16 26 C -0.11 -0.78 7.18 31.65 0.23 -0.56 16 27 C -0.15 -2.33 6.86 30.59 0.21 -2.12 16 28 C 0.50 13.46 6.79 87.90 0.60 14.05 16 29 O -0.56 -21.61 14.57 18.07 0.26 -21.35 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 7.74 -2.39 -0.02 0.76 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.39 6.68 -2.39 -0.02 1.38 16 34 H 0.08 1.66 6.81 -2.39 -0.02 1.64 16 35 H 0.09 1.89 7.80 -2.39 -0.02 1.87 16 36 H 0.09 1.92 6.86 -2.39 -0.02 1.90 16 37 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.05 2.12 7.91 -2.39 -0.02 2.10 16 39 H 0.04 1.60 2.90 -2.39 -0.01 1.59 16 40 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 43 H 0.04 1.69 8.00 -2.39 -0.02 1.67 16 44 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.06 2.02 8.04 -2.39 -0.02 2.00 16 46 H 0.07 2.30 7.99 -2.39 -0.02 2.29 16 47 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.11 0.28 8.14 -2.39 -0.02 0.27 16 51 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -79.24 400.07 4.54 -74.70 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.85 Total: 13.51 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 7.44 Total: 30.49 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -5.97 Total: -120.56 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: 0.52 Total: -44.64 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.71 Total: 46.50 kcal Total: -79.24 4.54 -74.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.989 kcal (2) G-P(sol) polarization free energy of solvation -79.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds