Wall clock time and date at job start Tue Mar 31 2020 20:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47482 * 2 1 4 4 H 1.08998 * 109.47027 * 305.89066 * 3 2 1 5 5 C 1.50701 * 109.47620 * 185.88697 * 3 2 1 6 6 O 1.21284 * 119.99961 * 264.30867 * 5 3 2 7 7 N 1.34772 * 120.00070 * 84.30063 * 5 3 2 8 8 C 1.47026 * 125.64663 * 4.20252 * 7 5 3 9 9 C 1.54313 * 107.27532 * 180.96539 * 8 7 5 10 10 C 1.55156 * 102.86424 * 22.52195 * 9 8 7 11 11 H 1.09006 * 111.00351 * 82.37944 * 10 9 8 12 12 C 1.53000 * 111.04095 * 206.21661 * 10 9 8 13 13 N 1.46504 * 109.47003 * 287.21633 * 12 10 9 14 14 C 1.46505 * 119.99855 * 89.99480 * 13 12 10 15 15 C 1.36938 * 120.00012 * 269.99885 * 13 12 10 16 16 H 1.07995 * 119.99981 * 30.46363 * 15 13 12 17 17 C 1.38816 * 119.99864 * 210.45971 * 15 13 12 18 18 N 1.31621 * 119.99887 * 7.22281 * 17 15 13 19 19 Si 1.86793 * 119.99941 * 187.22043 * 17 15 13 20 20 H 1.48501 * 109.46985 * 60.00155 * 19 17 15 21 21 H 1.48499 * 109.47394 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47374 * 300.00664 * 19 17 15 23 23 C 1.47424 * 125.65066 * 184.50249 * 7 5 3 24 24 N 1.46510 * 109.47229 * 65.88520 * 3 2 1 25 25 C 1.46759 * 124.34958 * 240.00356 * 24 3 2 26 26 C 1.54478 * 105.47193 * 162.98123 * 25 24 3 27 27 C 1.54624 * 101.76593 * 25.41575 * 26 25 24 28 28 C 1.34741 * 124.29437 * 59.96257 * 24 3 2 29 29 O 1.21282 * 125.12512 * 0.42128 * 28 24 3 30 30 H 1.09007 * 109.47362 * 59.99991 * 1 2 3 31 31 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47527 * 300.00313 * 1 2 3 33 33 H 1.08996 * 109.47278 * 239.99909 * 2 1 3 34 34 H 1.09004 * 109.47020 * 119.99617 * 2 1 3 35 35 H 1.08999 * 109.88095 * 300.50655 * 8 7 5 36 36 H 1.08997 * 109.88498 * 61.67698 * 8 7 5 37 37 H 1.09001 * 110.92730 * 264.10719 * 9 8 7 38 38 H 1.09000 * 110.74804 * 140.85469 * 9 8 7 39 39 H 1.09004 * 109.47012 * 47.21129 * 12 10 9 40 40 H 1.08993 * 109.47249 * 167.21781 * 12 10 9 41 41 H 1.08998 * 109.46906 * 85.51256 * 14 13 12 42 42 H 1.09002 * 109.46838 * 205.51029 * 14 13 12 43 43 H 1.08995 * 109.47474 * 325.51296 * 14 13 12 44 44 H 0.97000 * 119.99977 * 179.97438 * 18 17 15 45 45 H 1.09000 * 110.36959 * 274.67949 * 23 7 5 46 46 H 1.09001 * 110.36610 * 36.99977 * 23 7 5 47 47 H 1.09001 * 110.24558 * 43.98022 * 25 24 3 48 48 H 1.08995 * 110.31839 * 282.01955 * 25 24 3 49 49 H 1.09008 * 110.96836 * 267.29567 * 26 25 24 50 50 H 1.09003 * 111.00429 * 143.54814 * 26 25 24 51 51 H 1.08995 * 110.48729 * 93.88219 * 27 26 25 52 52 H 1.09004 * 110.48597 * 216.39470 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5931 1.9858 -0.8325 5 6 3.5400 1.4450 -0.1457 6 8 4.2448 1.5143 0.8389 7 7 4.0982 1.3700 -1.3701 8 6 3.3679 1.3691 -2.6462 9 6 4.4146 1.2438 -3.7731 10 6 5.6280 0.6041 -3.0480 11 1 5.5129 -0.4774 -2.9736 12 6 6.9395 0.9662 -3.7478 13 7 7.0401 0.2276 -5.0091 14 6 6.5058 0.8092 -6.2430 15 6 7.6335 -1.0062 -5.0345 16 1 7.5856 -1.6465 -4.1661 17 6 8.2964 -1.4341 -6.1766 18 7 8.4784 -0.6041 -7.1818 19 14 8.9302 -3.1878 -6.2869 20 1 7.7933 -4.1341 -6.1563 21 1 9.5965 -3.3918 -7.5982 22 1 9.9051 -3.4315 -5.1936 23 6 5.5418 1.2690 -1.6516 24 7 1.6708 2.0910 1.2607 25 6 0.8273 3.2879 1.3603 26 6 0.3605 3.3418 2.8319 27 6 1.4883 2.5644 3.5491 28 6 2.0620 1.6639 2.4773 29 8 2.7696 0.7009 2.6845 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.6813 0.5231 -2.6797 36 1 2.8156 2.3021 -2.7579 37 1 4.6765 2.2238 -4.1719 38 1 4.0513 0.5907 -4.5666 39 1 6.9592 2.0369 -3.9512 40 1 7.7792 0.7029 -3.1047 41 1 7.2566 1.4585 -6.6934 42 1 6.2505 0.0109 -6.9400 43 1 5.6129 1.3908 -6.0138 44 1 8.9420 -0.9030 -7.9797 45 1 5.9940 2.2605 -1.6749 46 1 6.0314 0.6454 -0.9036 47 1 -0.0317 3.2003 0.6950 48 1 1.4045 4.1792 1.1147 49 1 -0.5991 2.8396 2.9554 50 1 0.3087 4.3708 3.1878 51 1 2.2500 3.2512 3.9182 52 1 1.0816 1.9713 4.3682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494179523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:30 Heat of formation + Delta-G solvation = -63.911318 kcal Electronic energy + Delta-G solvation = -30657.898417 eV Core-core repulsion = 26657.194896 eV Total energy + Delta-G solvation = -4000.703521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91688 -40.62276 -38.84048 -37.39251 -37.05878 -35.83897 -33.91982 -32.12517 -31.96328 -30.45736 -28.65298 -28.36584 -27.86480 -26.71658 -24.36481 -23.20993 -22.94441 -22.66962 -21.36401 -21.09737 -19.61031 -18.66842 -18.37577 -17.82016 -17.25639 -17.13485 -16.77808 -16.42079 -16.03416 -15.64422 -15.46360 -15.25347 -14.96071 -14.65123 -14.56364 -14.37982 -14.25088 -14.07152 -13.80316 -13.74275 -13.64633 -13.35189 -13.32182 -12.93558 -12.89963 -12.78287 -12.60767 -12.52684 -12.41496 -12.26614 -12.15348 -12.03853 -12.00291 -11.79070 -11.76321 -11.59636 -11.37307 -11.03222 -10.60451 -10.59442 -9.68428 -9.63754 -8.63638 -7.85227 -5.38461 1.44759 1.45352 1.46239 1.53067 1.59930 1.84788 2.25489 2.49477 3.29581 3.30966 3.48811 3.62482 3.68131 3.72207 3.84139 3.88204 3.95133 4.08582 4.12358 4.21793 4.31207 4.35235 4.43983 4.44768 4.58973 4.59986 4.69352 4.70635 4.74980 4.81594 4.85016 4.88471 4.97692 5.01965 5.02519 5.10555 5.11944 5.12504 5.24051 5.25476 5.29428 5.31882 5.36890 5.49157 5.59768 5.64063 5.73125 6.20659 6.38318 6.49449 7.06792 7.18504 7.32492 7.88782 8.34346 9.18432 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.002349 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.135307 B =11914.953322 C =12046.830905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C 0.155 3.845 4 H 0.146 0.854 5 C 0.502 3.498 6 O -0.569 6.569 7 N -0.616 5.616 8 C 0.100 3.900 9 C -0.111 4.111 10 C -0.106 4.106 11 H 0.058 0.942 12 C 0.163 3.837 13 N -0.613 5.613 14 C 0.176 3.824 15 C -0.264 4.264 16 H 0.059 0.941 17 C -0.046 4.046 18 N -0.935 5.935 19 Si 0.964 3.036 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.118 3.882 24 N -0.613 5.613 25 C 0.096 3.904 26 C -0.114 4.114 27 C -0.154 4.154 28 C 0.502 3.498 29 O -0.566 6.566 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.033 0.967 41 H -0.009 1.009 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.249 0.751 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.110 0.890 48 H 0.075 0.925 49 H 0.098 0.902 50 H 0.116 0.884 51 H 0.103 0.897 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.263 12.089 14.507 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C 0.048 3.952 4 H 0.164 0.836 5 C 0.290 3.710 6 O -0.447 6.447 7 N -0.351 5.351 8 C -0.021 4.021 9 C -0.149 4.149 10 C -0.128 4.128 11 H 0.076 0.924 12 C 0.036 3.964 13 N -0.336 5.336 14 C 0.031 3.969 15 C -0.395 4.395 16 H 0.077 0.923 17 C -0.241 4.241 18 N -0.581 5.581 19 Si 0.792 3.208 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.005 4.005 24 N -0.348 5.348 25 C -0.025 4.025 26 C -0.152 4.152 27 C -0.194 4.194 28 C 0.291 3.709 29 O -0.444 6.444 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.009 0.991 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.128 0.872 48 H 0.093 0.907 49 H 0.117 0.883 50 H 0.134 0.866 51 H 0.121 0.879 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.478 11.604 14.980 30.955 hybrid contribution 1.539 -1.367 -0.293 2.079 sum -22.939 10.237 14.687 29.097 Atomic orbital electron populations 1.21651 0.91695 1.02696 1.03118 1.21770 0.99175 0.93493 1.02453 1.20904 0.88934 0.96796 0.88579 0.83650 1.21420 0.92217 0.76011 0.81345 1.90751 1.64956 1.50605 1.38398 1.48682 1.08035 1.72195 1.06163 1.22348 0.95110 1.03627 0.81048 1.22586 0.93748 1.01718 0.96821 1.22835 0.97941 0.99174 0.92852 0.92359 1.20711 0.94001 0.94787 0.86913 1.43969 1.67486 1.17961 1.04178 1.20574 0.93600 0.95446 0.87261 1.19337 1.27167 0.93108 0.99894 0.92319 1.25892 0.98722 1.01628 0.97890 1.70161 1.45852 1.35270 1.06787 0.85403 0.78279 0.80539 0.76553 1.20328 1.21769 1.20604 1.22097 0.81846 1.00291 0.96302 1.48315 1.51843 1.30205 1.04425 1.22459 0.94661 0.85784 0.99629 1.22617 0.97535 1.02905 0.92106 1.22373 1.00620 0.99130 0.97265 1.21750 0.78701 0.84507 0.85901 1.90701 1.38236 1.30773 1.84711 0.89817 0.92142 0.92441 0.90261 0.93881 0.89832 0.88060 0.89859 0.90074 0.92740 0.94875 0.99086 0.95901 0.94157 0.94139 0.91024 0.93535 0.87156 0.90660 0.88294 0.86591 0.87909 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.81 71.98 0.71 -0.97 16 2 C -0.13 -2.65 5.35 30.59 0.16 -2.49 16 3 C 0.15 3.10 2.19 44.24 0.10 3.20 16 4 H 0.15 1.68 7.26 -2.39 -0.02 1.66 16 5 C 0.50 15.14 7.01 87.66 0.61 15.75 16 6 O -0.57 -23.37 14.29 17.95 0.26 -23.12 16 7 N -0.62 -16.77 3.33 -811.82 -2.70 -19.47 16 8 C 0.10 1.92 6.12 86.72 0.53 2.45 16 9 C -0.11 -2.76 5.00 31.78 0.16 -2.60 16 10 C -0.11 -3.50 3.25 -9.40 -0.03 -3.53 16 11 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 12 C 0.16 6.46 5.19 86.38 0.45 6.91 16 13 N -0.61 -30.00 2.87 -726.92 -2.09 -32.09 16 14 C 0.18 8.25 8.84 127.77 1.13 9.38 16 15 C -0.26 -14.56 9.59 84.03 0.81 -13.76 16 16 H 0.06 3.22 7.84 -2.91 -0.02 3.20 16 17 C -0.05 -2.56 5.14 84.86 0.44 -2.13 16 18 N -0.93 -55.15 10.94 21.65 0.24 -54.91 16 19 Si 0.96 45.50 29.56 68.60 2.03 47.53 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 C 0.12 3.73 6.36 86.85 0.55 4.29 16 24 N -0.61 -11.68 2.28 -797.73 -1.82 -13.50 16 25 C 0.10 0.77 7.30 86.83 0.63 1.41 16 26 C -0.11 -0.61 7.18 31.65 0.23 -0.38 16 27 C -0.15 -2.23 6.85 30.59 0.21 -2.02 16 28 C 0.50 13.05 6.79 87.85 0.60 13.65 16 29 O -0.57 -21.73 14.59 17.95 0.26 -21.47 16 30 H 0.08 0.61 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.70 7.78 -2.38 -0.02 0.68 16 33 H 0.08 1.56 7.44 -2.39 -0.02 1.55 16 34 H 0.04 1.26 6.63 -2.39 -0.02 1.24 16 35 H 0.08 1.36 7.44 -2.39 -0.02 1.34 16 36 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 37 H 0.08 1.94 7.63 -2.39 -0.02 1.92 16 38 H 0.08 2.12 7.98 -2.39 -0.02 2.10 16 39 H 0.05 1.98 7.90 -2.39 -0.02 1.96 16 40 H 0.03 1.40 8.04 -2.39 -0.02 1.38 16 41 H -0.01 -0.48 7.75 -2.39 -0.02 -0.50 16 42 H 0.02 1.16 7.06 -2.39 -0.02 1.15 16 43 H 0.04 1.51 6.32 -2.39 -0.02 1.50 16 44 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.07 2.16 8.04 -2.39 -0.02 2.14 16 46 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 47 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 50 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 51 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -84.30 403.91 4.34 -79.96 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.88 Total: 7.91 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 7.28 Total: 29.16 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -6.37 Total: -119.97 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: 0.52 Total: -44.59 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -84.30 4.34 -79.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.052 kcal (2) G-P(sol) polarization free energy of solvation -84.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds