Wall clock time and date at job start Tue Mar 31 2020 20:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 H 1.08991 * 109.47572 * 304.23963 * 3 2 1 5 5 C 1.50711 * 109.46643 * 184.23592 * 3 2 1 6 6 O 1.21270 * 120.00414 * 259.98090 * 5 3 2 7 7 N 1.34780 * 119.99211 * 79.98660 * 5 3 2 8 8 C 1.47017 * 125.65470 * 5.22535 * 7 5 3 9 9 C 1.54366 * 107.29089 * 178.87202 * 8 7 5 10 10 C 1.55155 * 102.91965 * 337.86365 * 9 8 7 11 11 H 1.08997 * 111.00758 * 277.35609 * 10 9 8 12 12 C 1.53005 * 111.00420 * 153.54210 * 10 9 8 13 13 N 1.46504 * 109.46950 * 69.58090 * 12 10 9 14 14 C 1.46499 * 119.99786 * 89.99999 * 13 12 10 15 15 C 1.36936 * 120.00231 * 270.00152 * 13 12 10 16 16 H 1.08000 * 119.99891 * 24.44817 * 15 13 12 17 17 C 1.38807 * 119.99801 * 204.45135 * 15 13 12 18 18 N 1.31618 * 120.00422 * 13.86779 * 17 15 13 19 19 Si 1.86801 * 119.99959 * 193.86315 * 17 15 13 20 20 H 1.48511 * 109.46899 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47427 * 119.99716 * 19 17 15 22 22 H 1.48501 * 109.47259 * 240.00246 * 19 17 15 23 23 C 1.47425 * 125.64019 * 185.18427 * 7 5 3 24 24 N 1.46494 * 109.47317 * 64.24370 * 3 2 1 25 25 C 1.46769 * 124.34999 * 239.72268 * 24 3 2 26 26 C 1.54658 * 105.38435 * 162.84839 * 25 24 3 27 27 C 1.54630 * 101.68271 * 25.77147 * 26 25 24 28 28 C 1.34424 * 124.35538 * 60.01738 * 24 3 2 29 29 O 1.21286 * 124.93788 * 0.39052 * 28 24 3 30 30 H 1.09006 * 109.47121 * 299.99946 * 1 2 3 31 31 H 1.09000 * 109.47035 * 59.99982 * 1 2 3 32 32 H 1.08994 * 109.47024 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47208 * 240.00135 * 2 1 3 34 34 H 1.09000 * 109.47035 * 120.00018 * 2 1 3 35 35 H 1.09000 * 109.88009 * 298.32607 * 8 7 5 36 36 H 1.09001 * 109.87946 * 59.33764 * 8 7 5 37 37 H 1.08997 * 110.75876 * 219.49338 * 9 8 7 38 38 H 1.09004 * 110.70233 * 96.20414 * 9 8 7 39 39 H 1.08991 * 109.47108 * 309.58457 * 12 10 9 40 40 H 1.09000 * 109.47321 * 189.58028 * 12 10 9 41 41 H 1.08995 * 109.47579 * 92.03662 * 14 13 12 42 42 H 1.09007 * 109.47386 * 332.03552 * 14 13 12 43 43 H 1.09003 * 109.47542 * 212.03917 * 14 13 12 44 44 H 0.96995 * 119.99991 * 180.02562 * 18 17 15 45 45 H 1.09005 * 110.36575 * 85.32951 * 23 7 5 46 46 H 1.08999 * 110.37425 * 323.00286 * 23 7 5 47 47 H 1.08998 * 110.24732 * 281.98477 * 25 24 3 48 48 H 1.09001 * 110.24330 * 43.97934 * 25 24 3 49 49 H 1.08993 * 111.19782 * 267.59442 * 26 25 24 50 50 H 1.08995 * 110.85167 * 143.78869 * 26 25 24 51 51 H 1.09004 * 110.48667 * 216.30679 * 27 26 25 52 52 H 1.09004 * 110.60249 * 93.71667 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6160 1.9778 -0.8495 5 6 3.5434 1.4438 -0.1050 6 8 4.2206 1.6015 0.8887 7 7 4.1353 1.2697 -1.3033 8 6 3.4417 1.1768 -2.5962 9 6 4.5224 1.0092 -3.6856 10 6 5.7931 1.5830 -3.0049 11 1 5.8231 2.6695 -3.0862 12 6 7.0599 0.9570 -3.5918 13 7 7.2468 1.4298 -4.9658 14 6 8.0232 2.6452 -5.2229 15 6 6.6958 0.7357 -6.0097 16 1 5.8328 0.1076 -5.8449 17 6 7.2465 0.8392 -7.2796 18 7 8.4395 1.3721 -7.4382 19 14 6.2945 0.2222 -8.7637 20 1 4.9891 -0.3296 -8.3199 21 1 6.0627 1.3465 -9.7056 22 1 7.0750 -0.8416 -9.4451 23 6 5.5857 1.1418 -1.5345 24 7 1.6369 2.1030 1.2439 25 6 0.7958 3.3041 1.3090 26 6 0.2844 3.3683 2.7671 27 6 1.3928 2.5985 3.5219 28 6 1.9944 1.6903 2.4723 29 8 2.6968 0.7293 2.7051 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.7756 0.3140 -2.5984 36 1 2.8697 2.0870 -2.7762 37 1 4.2674 1.5858 -4.5747 38 1 4.6597 -0.0434 -3.9335 39 1 6.9624 -0.1286 -3.5912 40 1 7.9207 1.2448 -2.9882 41 1 9.0655 2.3799 -5.3998 42 1 7.9584 3.3073 -4.3594 43 1 7.6235 3.1529 -6.1007 44 1 8.8241 1.4448 -8.3257 45 1 5.9013 0.1070 -1.4009 46 1 6.1367 1.7975 -0.8603 47 1 1.3850 4.1903 1.0735 48 1 -0.0438 3.2143 0.6196 49 1 -0.6779 2.8669 2.8697 50 1 0.2228 4.4006 3.1115 51 1 0.9641 2.0113 4.3341 52 1 2.1448 3.2877 3.9064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494179524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:34 Heat of formation + Delta-G solvation = -41.138671 kcal Electronic energy + Delta-G solvation = -30723.907061 eV Core-core repulsion = 26724.191036 eV Total energy + Delta-G solvation = -3999.716025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.01461 -39.53732 -37.49124 -36.44623 -35.33624 -35.02981 -32.20807 -31.30704 -30.50160 -29.13976 -27.84172 -27.52540 -25.92279 -25.22108 -23.10146 -22.38702 -22.19996 -21.42779 -20.12388 -19.64889 -18.57620 -17.51307 -17.02508 -16.68937 -16.40385 -15.77186 -15.49726 -15.09870 -14.91347 -14.51133 -14.22135 -13.85465 -13.69155 -13.49912 -13.39839 -13.25950 -13.22812 -13.03602 -12.99659 -12.77473 -12.46562 -12.26322 -12.00563 -11.85421 -11.81071 -11.48031 -11.43012 -11.31744 -11.18502 -11.04241 -10.85499 -10.68448 -10.40985 -10.31785 -10.13715 -9.91141 -9.82699 -9.79297 -9.65305 -8.78975 -8.55424 -8.47373 -6.71888 -5.73851 -3.20526 2.44504 2.66721 2.71646 3.23910 3.35393 3.42426 3.44371 4.09486 4.14520 4.39879 4.47016 4.49142 4.61174 4.65665 4.79632 4.91511 4.94120 5.02650 5.11107 5.16696 5.22839 5.26166 5.34574 5.39672 5.40524 5.47813 5.49721 5.54948 5.62533 5.67895 5.77525 5.80550 5.87996 5.98132 6.01183 6.16706 6.23202 6.30133 6.38427 6.52290 6.58236 6.69558 6.77294 6.93495 7.00411 7.35164 7.62626 7.70776 7.80373 8.12940 8.29988 8.40223 9.22983 9.86942 10.37571 11.31816 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.002463 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.027652 B =11366.512023 C =11930.628442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.150 3.850 4 H 0.106 0.894 5 C 0.512 3.488 6 O -0.518 6.518 7 N -0.616 5.616 8 C 0.094 3.906 9 C -0.110 4.110 10 C -0.116 4.116 11 H 0.075 0.925 12 C 0.162 3.838 13 N -0.599 5.599 14 C 0.162 3.838 15 C -0.252 4.252 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.906 5.906 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.111 3.889 24 N -0.612 5.612 25 C 0.103 3.897 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.523 3.477 29 O -0.505 6.505 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.038 0.962 41 H 0.026 0.974 42 H -0.003 1.003 43 H 0.042 0.958 44 H 0.251 0.749 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.099 0.901 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 4.188 16.749 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.043 3.957 4 H 0.124 0.876 5 C 0.298 3.702 6 O -0.392 6.392 7 N -0.351 5.351 8 C -0.028 4.028 9 C -0.148 4.148 10 C -0.138 4.138 11 H 0.093 0.907 12 C 0.033 3.967 13 N -0.321 5.321 14 C 0.017 3.983 15 C -0.382 4.382 16 H 0.088 0.912 17 C -0.198 4.198 18 N -0.551 5.551 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.011 4.011 24 N -0.347 5.347 25 C -0.020 4.020 26 C -0.167 4.167 27 C -0.196 4.196 28 C 0.310 3.690 29 O -0.378 6.378 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.015 0.985 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.117 0.883 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.997 3.760 17.278 25.953 hybrid contribution -0.439 -0.120 -1.149 1.235 sum -19.436 3.640 16.129 25.518 Atomic orbital electron populations 1.21696 0.94557 1.02064 1.01772 1.21827 0.96912 0.94074 1.04420 1.20801 0.91917 0.95700 0.87252 0.87621 1.20480 0.90180 0.77312 0.82197 1.90748 1.65228 1.48067 1.35197 1.48572 1.08618 1.71982 1.05951 1.22257 0.96447 1.00655 0.83485 1.22573 0.93109 1.02547 0.96575 1.23150 0.98219 1.00951 0.91455 0.90687 1.20622 0.92599 0.96778 0.86664 1.43853 1.61623 1.26292 1.00367 1.20761 0.95784 0.86209 0.95546 1.19219 1.07669 1.23995 0.87296 0.91212 1.25060 0.95599 1.00558 0.98547 1.70077 1.14451 1.49098 1.21432 0.86254 0.79356 0.78041 0.83285 1.20279 1.21720 1.21817 1.22329 0.80074 1.01192 0.97543 1.47993 1.52251 1.29143 1.05359 1.22135 0.94202 0.87537 0.98086 1.22593 0.98459 1.01891 0.93768 1.22329 0.99424 0.99569 0.98243 1.20709 0.79582 0.84885 0.83829 1.90731 1.35869 1.28147 1.83030 0.92657 0.92565 0.92211 0.90205 0.89720 0.91823 0.91957 0.89434 0.90551 0.93150 0.94349 0.95533 0.98477 0.93877 0.93840 0.91567 0.91012 0.91160 0.90306 0.89944 0.89213 0.88291 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.79 37.16 0.36 -0.75 16 2 C -0.13 -1.41 5.34 -26.73 -0.14 -1.55 16 3 C 0.15 1.69 2.14 -69.08 -0.15 1.54 16 4 H 0.11 0.93 7.38 -51.93 -0.38 0.54 16 5 C 0.51 7.87 6.99 -10.98 -0.08 7.79 16 6 O -0.52 -10.14 14.31 -15.95 -0.23 -10.37 16 7 N -0.62 -8.90 3.33 -170.49 -0.57 -9.47 16 8 C 0.09 1.14 6.21 -3.04 -0.02 1.12 16 9 C -0.11 -1.65 5.17 -24.87 -0.13 -1.78 16 10 C -0.12 -1.90 3.27 -88.47 -0.29 -2.19 16 11 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 12 C 0.16 3.16 5.19 -4.04 -0.02 3.14 16 13 N -0.60 -14.38 2.88 -181.12 -0.52 -14.90 16 14 C 0.16 3.90 8.99 59.85 0.54 4.44 16 15 C -0.25 -6.53 9.06 -15.06 -0.14 -6.67 16 16 H 0.07 1.73 6.84 -52.49 -0.36 1.37 16 17 C 0.00 0.02 5.05 -17.43 -0.09 -0.07 16 18 N -0.91 -26.06 10.87 55.49 0.60 -25.45 16 19 Si 0.90 21.18 29.58 -169.99 -5.03 16.15 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.11 1.73 6.40 -2.53 -0.02 1.72 16 24 N -0.61 -6.52 2.18 -166.05 -0.36 -6.88 16 25 C 0.10 0.67 7.31 -3.02 -0.02 0.64 16 26 C -0.13 -0.62 7.19 -25.00 -0.18 -0.80 16 27 C -0.16 -1.24 6.86 -26.74 -0.18 -1.42 16 28 C 0.52 6.75 6.75 -10.86 -0.07 6.68 16 29 O -0.50 -8.96 14.69 -15.97 -0.23 -9.19 16 30 H 0.05 0.43 7.73 -51.93 -0.40 0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.80 6.98 -51.93 -0.36 0.44 16 34 H 0.08 1.15 6.67 -51.93 -0.35 0.80 16 35 H 0.06 0.66 6.99 -51.93 -0.36 0.30 16 36 H 0.06 0.66 7.95 -51.93 -0.41 0.25 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.20 7.59 -51.93 -0.39 0.80 16 39 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 40 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 41 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 42 H 0.00 -0.07 8.06 -51.93 -0.42 -0.49 16 43 H 0.04 1.11 7.26 -51.93 -0.38 0.73 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 46 H 0.07 1.18 7.99 -51.93 -0.41 0.77 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -34.83 403.55 -10.11 -44.95 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -9.23 Total: -2.77 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -0.62 Total: 11.85 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.85 Total: -56.69 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.46 Total: -19.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.83 -10.11 -44.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.807 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds