Wall clock time and date at job start Tue Mar 31 2020 20:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 H 1.08991 * 109.47572 * 304.23963 * 3 2 1 5 5 C 1.50711 * 109.46643 * 184.23592 * 3 2 1 6 6 O 1.21270 * 120.00414 * 259.98090 * 5 3 2 7 7 N 1.34780 * 119.99211 * 79.98660 * 5 3 2 8 8 C 1.47017 * 125.65470 * 5.22535 * 7 5 3 9 9 C 1.54366 * 107.29089 * 178.87202 * 8 7 5 10 10 C 1.55155 * 102.91965 * 337.86365 * 9 8 7 11 11 H 1.08997 * 111.00758 * 277.35609 * 10 9 8 12 12 C 1.53005 * 111.00420 * 153.54210 * 10 9 8 13 13 N 1.46504 * 109.46950 * 69.58090 * 12 10 9 14 14 C 1.46499 * 119.99786 * 89.99999 * 13 12 10 15 15 C 1.36936 * 120.00231 * 270.00152 * 13 12 10 16 16 H 1.08000 * 119.99891 * 24.44817 * 15 13 12 17 17 C 1.38807 * 119.99801 * 204.45135 * 15 13 12 18 18 N 1.31618 * 120.00422 * 13.86779 * 17 15 13 19 19 Si 1.86801 * 119.99959 * 193.86315 * 17 15 13 20 20 H 1.48511 * 109.46899 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47427 * 119.99716 * 19 17 15 22 22 H 1.48501 * 109.47259 * 240.00246 * 19 17 15 23 23 C 1.47425 * 125.64019 * 185.18427 * 7 5 3 24 24 N 1.46494 * 109.47317 * 64.24370 * 3 2 1 25 25 C 1.46769 * 124.34999 * 239.72268 * 24 3 2 26 26 C 1.54658 * 105.38435 * 162.84839 * 25 24 3 27 27 C 1.54630 * 101.68271 * 25.77147 * 26 25 24 28 28 C 1.34424 * 124.35538 * 60.01738 * 24 3 2 29 29 O 1.21286 * 124.93788 * 0.39052 * 28 24 3 30 30 H 1.09006 * 109.47121 * 299.99946 * 1 2 3 31 31 H 1.09000 * 109.47035 * 59.99982 * 1 2 3 32 32 H 1.08994 * 109.47024 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47208 * 240.00135 * 2 1 3 34 34 H 1.09000 * 109.47035 * 120.00018 * 2 1 3 35 35 H 1.09000 * 109.88009 * 298.32607 * 8 7 5 36 36 H 1.09001 * 109.87946 * 59.33764 * 8 7 5 37 37 H 1.08997 * 110.75876 * 219.49338 * 9 8 7 38 38 H 1.09004 * 110.70233 * 96.20414 * 9 8 7 39 39 H 1.08991 * 109.47108 * 309.58457 * 12 10 9 40 40 H 1.09000 * 109.47321 * 189.58028 * 12 10 9 41 41 H 1.08995 * 109.47579 * 92.03662 * 14 13 12 42 42 H 1.09007 * 109.47386 * 332.03552 * 14 13 12 43 43 H 1.09003 * 109.47542 * 212.03917 * 14 13 12 44 44 H 0.96995 * 119.99991 * 180.02562 * 18 17 15 45 45 H 1.09005 * 110.36575 * 85.32951 * 23 7 5 46 46 H 1.08999 * 110.37425 * 323.00286 * 23 7 5 47 47 H 1.08998 * 110.24732 * 281.98477 * 25 24 3 48 48 H 1.09001 * 110.24330 * 43.97934 * 25 24 3 49 49 H 1.08993 * 111.19782 * 267.59442 * 26 25 24 50 50 H 1.08995 * 110.85167 * 143.78869 * 26 25 24 51 51 H 1.09004 * 110.48667 * 216.30679 * 27 26 25 52 52 H 1.09004 * 110.60249 * 93.71667 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6160 1.9778 -0.8495 5 6 3.5434 1.4438 -0.1050 6 8 4.2206 1.6015 0.8887 7 7 4.1353 1.2697 -1.3033 8 6 3.4417 1.1768 -2.5962 9 6 4.5224 1.0092 -3.6856 10 6 5.7931 1.5830 -3.0049 11 1 5.8231 2.6695 -3.0862 12 6 7.0599 0.9570 -3.5918 13 7 7.2468 1.4298 -4.9658 14 6 8.0232 2.6452 -5.2229 15 6 6.6958 0.7357 -6.0097 16 1 5.8328 0.1076 -5.8449 17 6 7.2465 0.8392 -7.2796 18 7 8.4395 1.3721 -7.4382 19 14 6.2945 0.2222 -8.7637 20 1 4.9891 -0.3296 -8.3199 21 1 6.0627 1.3465 -9.7056 22 1 7.0750 -0.8416 -9.4451 23 6 5.5857 1.1418 -1.5345 24 7 1.6369 2.1030 1.2439 25 6 0.7958 3.3041 1.3090 26 6 0.2844 3.3683 2.7671 27 6 1.3928 2.5985 3.5219 28 6 1.9944 1.6903 2.4723 29 8 2.6968 0.7293 2.7051 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.7756 0.3140 -2.5984 36 1 2.8697 2.0870 -2.7762 37 1 4.2674 1.5858 -4.5747 38 1 4.6597 -0.0434 -3.9335 39 1 6.9624 -0.1286 -3.5912 40 1 7.9207 1.2448 -2.9882 41 1 9.0655 2.3799 -5.3998 42 1 7.9584 3.3073 -4.3594 43 1 7.6235 3.1529 -6.1007 44 1 8.8241 1.4448 -8.3257 45 1 5.9013 0.1070 -1.4009 46 1 6.1367 1.7975 -0.8603 47 1 1.3850 4.1903 1.0735 48 1 -0.0438 3.2143 0.6196 49 1 -0.6779 2.8669 2.8697 50 1 0.2228 4.4006 3.1115 51 1 0.9641 2.0113 4.3341 52 1 2.1448 3.2877 3.9064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494179524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:33 Heat of formation + Delta-G solvation = -61.593017 kcal Electronic energy + Delta-G solvation = -30724.794028 eV Core-core repulsion = 26724.191036 eV Total energy + Delta-G solvation = -4000.602992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.93742 -40.62699 -38.82966 -37.38067 -37.06246 -35.84542 -33.85220 -32.16554 -31.95479 -30.37524 -28.67235 -28.37027 -27.85938 -26.70887 -24.28887 -23.19692 -23.14202 -22.69627 -21.19304 -21.06130 -19.56795 -18.74047 -18.48754 -17.79597 -17.25612 -17.02580 -16.71512 -16.33810 -16.13478 -15.67135 -15.26338 -15.15949 -15.04480 -14.67270 -14.56134 -14.50527 -14.25797 -14.12262 -13.81335 -13.78693 -13.44125 -13.36445 -13.30227 -13.06197 -12.88693 -12.77779 -12.63664 -12.42295 -12.36090 -12.16395 -12.14756 -12.00662 -11.92326 -11.81144 -11.74951 -11.56227 -11.37750 -11.02574 -10.60194 -10.58344 -9.68510 -9.64679 -8.70611 -7.77892 -5.26648 1.46015 1.49708 1.51432 1.59875 1.61106 1.85860 2.24328 2.55400 3.29605 3.36592 3.48576 3.62029 3.67928 3.75175 3.84816 3.90162 3.94828 4.08331 4.14710 4.20666 4.30213 4.36824 4.42844 4.45156 4.59484 4.62227 4.69079 4.69683 4.76034 4.83620 4.85301 4.88123 4.88930 5.00794 5.05568 5.11068 5.11310 5.12664 5.22426 5.24635 5.31033 5.33144 5.40728 5.49812 5.58893 5.67800 5.74923 6.21144 6.38700 6.49459 7.06399 7.19966 7.32205 7.91281 8.38174 9.27050 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.002463 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.027652 B =11366.512023 C =11930.628442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.152 3.848 4 H 0.142 0.858 5 C 0.504 3.496 6 O -0.569 6.569 7 N -0.616 5.616 8 C 0.100 3.900 9 C -0.107 4.107 10 C -0.102 4.102 11 H 0.068 0.932 12 C 0.161 3.839 13 N -0.613 5.613 14 C 0.176 3.824 15 C -0.246 4.246 16 H 0.083 0.917 17 C -0.060 4.060 18 N -0.944 5.944 19 Si 0.964 3.036 20 H -0.257 1.257 21 H -0.295 1.295 22 H -0.300 1.300 23 C 0.117 3.883 24 N -0.611 5.611 25 C 0.094 3.906 26 C -0.114 4.114 27 C -0.153 4.153 28 C 0.504 3.496 29 O -0.568 6.568 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.040 0.960 41 H -0.002 1.002 42 H 0.026 0.974 43 H 0.020 0.980 44 H 0.245 0.755 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.114 0.886 51 H 0.107 0.893 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.989 5.000 16.708 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.045 3.955 4 H 0.160 0.840 5 C 0.292 3.708 6 O -0.447 6.447 7 N -0.350 5.350 8 C -0.021 4.021 9 C -0.145 4.145 10 C -0.124 4.124 11 H 0.087 0.913 12 C 0.034 3.966 13 N -0.336 5.336 14 C 0.031 3.969 15 C -0.376 4.376 16 H 0.100 0.900 17 C -0.255 4.255 18 N -0.592 5.592 19 Si 0.793 3.207 20 H -0.181 1.181 21 H -0.223 1.223 22 H -0.227 1.227 23 C -0.007 4.007 24 N -0.346 5.346 25 C -0.027 4.027 26 C -0.151 4.151 27 C -0.194 4.194 28 C 0.293 3.707 29 O -0.446 6.446 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.044 0.956 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.128 0.872 49 H 0.118 0.882 50 H 0.133 0.867 51 H 0.125 0.875 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.220 4.594 17.237 29.282 hybrid contribution 0.915 -0.379 -1.058 1.449 sum -22.305 4.216 16.179 27.876 Atomic orbital electron populations 1.21653 0.91931 1.02725 1.02949 1.21776 0.99028 0.93190 1.02741 1.20917 0.88779 0.96857 0.88914 0.84026 1.21361 0.91989 0.76015 0.81404 1.90729 1.66722 1.50390 1.36891 1.48649 1.08061 1.71443 1.06874 1.22354 0.95590 1.03271 0.80907 1.22493 0.93114 1.01738 0.97161 1.22806 0.97411 1.00190 0.91991 0.91330 1.20729 0.94296 0.96800 0.84755 1.44085 1.61493 1.26323 1.01725 1.20501 0.93981 0.86713 0.95739 1.19612 1.07417 1.22886 0.87687 0.89977 1.25845 0.96504 1.01765 1.01344 1.70250 1.16186 1.51358 1.21382 0.85245 0.78771 0.76926 0.79792 1.18112 1.22260 1.22737 1.22118 0.81410 1.00647 0.96487 1.48221 1.51891 1.29926 1.04520 1.22500 0.94511 0.85690 0.99973 1.22643 0.97667 1.02971 0.91849 1.22375 1.00421 0.99066 0.97495 1.21638 0.78835 0.84576 0.85635 1.90686 1.38739 1.31009 1.84210 0.92658 0.90056 0.91927 0.89694 0.93661 0.89153 0.89225 0.90148 0.91218 0.93382 0.94153 0.98394 0.95578 0.96154 0.94596 0.91828 0.92409 0.90931 0.87248 0.88158 0.86718 0.87486 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.79 71.98 0.70 -0.94 16 2 C -0.13 -2.49 5.34 30.60 0.16 -2.33 16 3 C 0.15 3.08 2.14 44.25 0.09 3.18 16 4 H 0.14 1.81 7.38 -2.39 -0.02 1.79 16 5 C 0.50 15.13 6.99 87.66 0.61 15.74 16 6 O -0.57 -22.96 14.31 17.58 0.25 -22.71 16 7 N -0.62 -16.88 3.33 -811.70 -2.70 -19.58 16 8 C 0.10 2.09 6.21 86.74 0.54 2.63 16 9 C -0.11 -2.97 5.17 31.80 0.16 -2.81 16 10 C -0.10 -3.26 3.27 -9.40 -0.03 -3.29 16 11 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 12 C 0.16 6.25 5.19 86.38 0.45 6.70 16 13 N -0.61 -29.40 2.88 -726.93 -2.10 -31.50 16 14 C 0.18 8.60 8.99 127.77 1.15 9.75 16 15 C -0.25 -12.61 9.06 84.03 0.76 -11.85 16 16 H 0.08 3.95 6.84 -2.91 -0.02 3.93 16 17 C -0.06 -3.27 5.05 84.86 0.43 -2.84 16 18 N -0.94 -55.57 10.87 21.65 0.24 -55.33 16 19 Si 0.96 43.46 29.58 68.60 2.03 45.49 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 23 C 0.12 3.61 6.40 86.86 0.56 4.17 16 24 N -0.61 -11.87 2.18 -797.83 -1.74 -13.61 16 25 C 0.09 0.86 7.31 86.89 0.64 1.49 16 26 C -0.11 -0.67 7.19 31.71 0.23 -0.44 16 27 C -0.15 -2.24 6.86 30.59 0.21 -2.03 16 28 C 0.50 12.99 6.75 87.90 0.59 13.58 16 29 O -0.57 -21.30 14.69 17.53 0.26 -21.04 16 30 H 0.05 0.68 7.73 -2.38 -0.02 0.66 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 1.50 6.98 -2.39 -0.02 1.48 16 34 H 0.04 1.26 6.67 -2.39 -0.02 1.24 16 35 H 0.09 1.48 6.99 -2.39 -0.02 1.46 16 36 H 0.09 1.46 7.95 -2.39 -0.02 1.44 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.07 2.04 7.59 -2.39 -0.02 2.02 16 39 H 0.05 1.88 7.94 -2.39 -0.02 1.86 16 40 H 0.04 1.54 8.07 -2.39 -0.02 1.52 16 41 H 0.00 -0.12 7.49 -2.39 -0.02 -0.14 16 42 H 0.03 1.09 8.06 -2.38 -0.02 1.07 16 43 H 0.02 1.05 7.26 -2.39 -0.02 1.03 16 44 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.06 1.99 8.04 -2.38 -0.02 1.97 16 46 H 0.06 1.94 7.99 -2.39 -0.02 1.93 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 50 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 51 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 52 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -80.97 403.55 4.38 -76.59 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.88 Total: 10.98 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 7.26 Total: 30.71 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -6.30 Total: -120.02 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: 0.51 Total: -43.75 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -80.97 4.38 -76.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.998 kcal (2) G-P(sol) polarization free energy of solvation -80.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds