Wall clock time and date at job start Tue Mar 31 2020 19:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 H 1.09000 * 110.01546 * 302.84215 * 3 2 1 5 5 C 1.54266 * 110.02787 * 64.23352 * 3 2 1 6 6 C 1.54893 * 104.19397 * 142.89674 * 5 3 2 7 7 C 1.54893 * 102.74714 * 322.05438 * 6 5 3 8 8 C 1.54085 * 109.92838 * 181.36799 * 3 2 1 9 9 C 1.53000 * 110.00791 * 121.37879 * 8 3 2 10 10 C 1.50698 * 110.16216 * 359.87893 * 8 3 2 11 11 O 1.21291 * 119.99999 * 250.28168 * 10 8 3 12 12 N 1.34775 * 120.00070 * 70.27753 * 10 8 3 13 13 C 1.46499 * 119.99956 * 184.95168 * 12 10 8 14 14 C 1.53933 * 113.73454 * 251.72676 * 13 12 10 15 15 N 1.47962 * 86.17941 * 221.92290 * 14 13 12 16 16 C 1.46902 * 110.99918 * 137.58672 * 15 14 13 17 17 C 1.50704 * 109.47268 * 70.63677 * 16 15 14 18 18 O 1.21294 * 120.00054 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00136 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00142 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99939 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99847 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99807 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47138 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47068 * 119.99985 * 24 22 20 27 27 H 1.48502 * 109.46919 * 239.99769 * 24 22 20 28 28 C 1.47954 * 90.76430 * 24.68987 * 15 14 13 29 29 H 1.08992 * 109.47295 * 59.99738 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47207 * 299.99450 * 1 2 3 32 32 H 1.09004 * 109.46972 * 240.00052 * 2 1 3 33 33 H 1.09006 * 109.47163 * 120.00409 * 2 1 3 34 34 H 1.09002 * 110.48831 * 24.22029 * 5 3 2 35 35 H 1.09000 * 110.48680 * 261.56845 * 5 3 2 36 36 H 1.09000 * 110.75842 * 203.74153 * 6 5 3 37 37 H 1.08997 * 110.91361 * 80.44129 * 6 5 3 38 38 H 1.09002 * 110.48466 * 156.61749 * 7 6 5 39 39 H 1.08997 * 110.48576 * 279.13340 * 7 6 5 40 40 H 1.08999 * 109.47254 * 178.47666 * 9 8 3 41 41 H 1.08998 * 109.46432 * 298.47474 * 9 8 3 42 42 H 1.08998 * 109.47055 * 58.47399 * 9 8 3 43 43 H 0.97001 * 119.99707 * 4.95080 * 12 10 8 44 44 H 1.09004 * 112.93854 * 23.44126 * 13 12 10 45 45 H 1.08990 * 113.76243 * 336.24311 * 14 13 12 46 46 H 1.09008 * 113.75573 * 107.60743 * 14 13 12 47 47 H 1.08992 * 109.47318 * 190.64216 * 16 15 14 48 48 H 1.09002 * 109.46616 * 310.64263 * 16 15 14 49 49 H 0.97009 * 119.99895 * 0.02562 * 19 17 16 50 50 H 0.96998 * 119.99811 * 179.97438 * 23 22 20 51 51 H 1.09002 * 113.76159 * 220.98789 * 28 15 14 52 52 H 1.09003 * 113.75562 * 89.62769 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6407 1.9794 -0.8605 5 6 1.6221 2.1506 1.3053 6 6 2.8316 3.0544 1.6510 7 6 4.0415 2.1746 1.2497 8 6 3.5804 1.4549 -0.0346 9 6 4.0703 2.2174 -1.2673 10 6 4.1109 0.0445 -0.0548 11 8 4.6783 -0.4040 0.9189 12 7 3.9549 -0.7185 -1.1547 13 6 4.3727 -2.1225 -1.1376 14 6 5.6364 -2.4031 -1.9706 15 7 4.9400 -3.6238 -2.4336 16 6 5.1325 -3.8246 -3.8760 17 6 6.5612 -4.2241 -4.1414 18 8 7.3421 -4.3314 -3.2196 19 7 6.9711 -4.4621 -5.4030 20 6 8.2707 -4.8260 -5.6444 21 1 8.9660 -4.9216 -4.8236 22 6 8.6931 -5.0719 -6.9451 23 7 7.8468 -4.9561 -7.9438 24 14 10.4640 -5.5670 -7.2740 25 1 11.2081 -5.6258 -5.9904 26 1 10.4921 -6.9016 -7.9247 27 1 11.0996 -4.5667 -8.1688 28 6 3.6259 -3.0036 -2.1552 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.4521 1.4214 2.0974 35 1 0.7291 2.7541 1.1428 36 1 2.8539 3.2787 2.7175 37 1 2.8108 3.9732 1.0650 38 1 4.9141 2.7955 1.0467 39 1 4.2636 1.4508 2.0338 40 1 5.1599 2.2441 -1.2688 41 1 3.7178 1.7157 -2.1685 42 1 3.6819 3.2356 -1.2427 43 1 3.5659 -0.3379 -1.9577 44 1 4.4049 -2.5439 -0.1328 45 1 5.8133 -1.6725 -2.7598 46 1 6.5230 -2.6046 -1.3693 47 1 4.4642 -4.6115 -4.2256 48 1 4.9102 -2.8977 -4.4047 49 1 6.3466 -4.3759 -6.1403 50 1 8.1419 -5.1274 -8.8518 51 1 2.9060 -3.6849 -1.7014 52 1 3.2148 -2.4486 -2.9984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494407555.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:07 Heat of formation + Delta-G solvation = -52.065486 kcal Electronic energy + Delta-G solvation = -30184.081026 eV Core-core repulsion = 26183.891179 eV Total energy + Delta-G solvation = -4000.189847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21031 -39.85372 -37.94968 -37.40228 -34.41755 -33.87077 -33.48592 -31.66935 -31.24100 -29.54487 -27.88949 -26.27463 -25.99481 -25.47950 -23.80974 -22.87362 -21.77492 -20.64925 -20.29487 -19.24831 -19.03931 -17.91060 -16.86278 -16.61480 -16.15503 -16.00589 -15.38560 -15.19714 -15.15623 -14.67121 -14.48401 -14.08717 -13.94799 -13.79414 -13.70916 -13.34390 -13.07384 -12.91252 -12.72164 -12.70415 -12.53792 -12.26097 -12.08378 -11.82371 -11.68085 -11.55889 -11.51827 -11.30168 -11.27168 -11.09697 -10.94214 -10.84543 -10.74913 -10.69254 -10.57608 -10.34751 -10.23116 -9.77411 -9.52620 -9.03313 -8.69826 -8.25540 -7.97416 -6.42985 -3.83626 2.52810 2.98693 3.15612 3.26327 3.34002 3.87728 4.00298 4.10052 4.14394 4.20366 4.29910 4.51515 4.68262 4.83260 4.86944 4.87921 4.90443 4.97962 5.01176 5.06741 5.15113 5.19876 5.28523 5.30237 5.32437 5.43396 5.44814 5.48024 5.57718 5.60999 5.65213 5.66300 5.70118 5.73877 5.76629 5.78781 5.81486 5.90921 5.96722 5.99125 6.08456 6.12291 6.19874 6.27852 6.41540 6.59735 7.13592 7.37800 7.54580 8.04860 8.12511 8.60142 9.17142 9.52726 10.04538 10.74892 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.002146 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.189499 B =13042.014437 C =13446.829291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C -0.077 4.077 4 H 0.081 0.919 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.109 4.109 8 C -0.084 4.084 9 C -0.140 4.140 10 C 0.532 3.468 11 O -0.535 6.535 12 N -0.721 5.721 13 C 0.116 3.884 14 C 0.010 3.990 15 N -0.449 5.449 16 C 0.013 3.987 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C -0.009 4.009 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.399 0.601 44 H 0.122 0.878 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.053 0.947 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.095 0.905 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.642 16.742 12.427 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.095 4.095 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.162 4.162 7 C -0.147 4.147 8 C -0.087 4.087 9 C -0.197 4.197 10 C 0.319 3.681 11 O -0.411 6.411 12 N -0.373 5.373 13 C 0.010 3.990 14 C -0.119 4.119 15 N -0.171 5.171 16 C -0.119 4.119 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.234 0.766 44 H 0.140 0.860 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.113 0.887 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.496 15.640 13.819 26.603 hybrid contribution 0.111 0.617 -1.891 1.992 sum -16.385 16.257 11.928 25.981 Atomic orbital electron populations 1.21760 0.95571 1.01678 1.01670 1.22013 0.96316 0.95802 1.03148 1.21893 0.91744 0.96758 0.99141 0.90057 1.22434 0.97840 0.98393 0.96806 1.22488 0.94632 0.97928 1.01122 1.22402 0.97694 0.98496 0.96126 1.21577 0.96394 0.92416 0.98293 1.21920 1.01861 1.00409 0.95526 1.20383 0.77871 0.87344 0.82502 1.90695 1.41701 1.73906 1.34764 1.46242 1.64327 1.11504 1.15211 1.23102 0.94904 0.79989 1.00981 1.24291 0.98474 0.90959 0.98221 1.68379 1.03043 1.30933 1.14786 1.22449 0.98178 1.01300 0.89969 1.19675 0.88701 0.84877 0.83930 1.90538 1.55342 1.56762 1.43395 1.41873 1.11842 1.60316 1.06167 1.19749 0.86788 1.42509 0.93632 0.87879 1.25263 1.00037 0.97607 0.95103 1.69621 1.35273 1.49724 0.99793 0.85801 0.81931 0.78041 0.78598 1.19202 1.20717 1.20772 1.24435 0.94911 0.96663 0.97880 0.92813 0.92737 0.92747 0.90678 0.91665 0.91285 0.91529 0.91385 0.91536 0.91311 0.89453 0.91834 0.92247 0.91281 0.76565 0.85974 0.91398 0.88320 0.89019 0.92881 0.77531 0.91941 0.88651 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.73 37.16 0.36 -0.60 16 2 C -0.14 -1.03 4.09 -26.73 -0.11 -1.13 16 3 C -0.08 -0.53 2.63 -89.39 -0.23 -0.76 16 4 H 0.08 0.47 7.68 -51.93 -0.40 0.07 16 5 C -0.12 -0.77 5.36 -25.07 -0.13 -0.90 16 6 C -0.12 -0.83 6.91 -24.73 -0.17 -1.00 16 7 C -0.11 -0.96 5.75 -25.07 -0.14 -1.11 16 8 C -0.08 -0.70 0.83 -154.43 -0.13 -0.83 16 9 C -0.14 -0.97 7.96 37.16 0.30 -0.68 16 10 C 0.53 6.10 4.76 -10.99 -0.05 6.05 16 11 O -0.53 -8.35 15.03 5.55 0.08 -8.26 16 12 N -0.72 -7.24 3.48 -54.94 -0.19 -7.43 16 13 C 0.12 1.44 4.40 -69.63 -0.31 1.13 16 14 C 0.01 0.17 6.56 -2.77 -0.02 0.15 16 15 N -0.45 -7.39 5.95 -239.90 -1.43 -8.82 16 16 C 0.01 0.23 5.31 -4.97 -0.03 0.21 16 17 C 0.44 10.54 7.59 -10.99 -0.08 10.46 16 18 O -0.58 -15.88 15.13 5.55 0.08 -15.80 16 19 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C -0.01 -0.10 7.73 -2.77 -0.02 -0.13 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.33 7.36 -51.93 -0.38 -0.05 16 32 H 0.07 0.57 5.58 -51.93 -0.29 0.28 16 33 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 34 H 0.07 0.51 7.79 -51.93 -0.40 0.10 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.58 7.84 -51.93 -0.41 0.17 16 39 H 0.09 0.97 6.79 -51.93 -0.35 0.62 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.35 7.10 -51.93 -0.37 -0.02 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.40 3.07 7.05 -40.82 -0.29 2.78 16 44 H 0.12 1.72 7.52 -51.93 -0.39 1.33 16 45 H 0.07 1.06 7.78 -51.93 -0.40 0.66 16 46 H 0.10 1.86 8.09 -51.92 -0.42 1.44 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.05 0.81 7.69 -51.93 -0.40 0.42 16 49 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 52 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 LS Contribution 403.77 15.07 6.08 6.08 Total: -1.00 -33.20 403.77 -9.67 -42.87 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -8.94 Total: 10.61 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.01 Total: 2.85 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.95 Total: -54.51 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.07 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.20 -9.67 -42.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494407555.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.191 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds