Wall clock time and date at job start Tue Mar 31 2020 19:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 H 1.09000 * 110.01546 * 302.84215 * 3 2 1 5 5 C 1.54266 * 110.02787 * 64.23352 * 3 2 1 6 6 C 1.54893 * 104.19397 * 142.89674 * 5 3 2 7 7 C 1.54893 * 102.74714 * 322.05438 * 6 5 3 8 8 C 1.54085 * 109.92838 * 181.36799 * 3 2 1 9 9 C 1.53000 * 110.00791 * 121.37879 * 8 3 2 10 10 C 1.50698 * 110.16216 * 359.87893 * 8 3 2 11 11 O 1.21291 * 119.99999 * 250.28168 * 10 8 3 12 12 N 1.34775 * 120.00070 * 70.27753 * 10 8 3 13 13 C 1.46499 * 119.99956 * 184.95168 * 12 10 8 14 14 C 1.53933 * 113.73454 * 251.72676 * 13 12 10 15 15 N 1.47962 * 86.17941 * 221.92290 * 14 13 12 16 16 C 1.46902 * 110.99918 * 137.58672 * 15 14 13 17 17 C 1.50704 * 109.47268 * 70.63677 * 16 15 14 18 18 O 1.21294 * 120.00054 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00136 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00142 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99939 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99847 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00160 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99807 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47138 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47068 * 119.99985 * 24 22 20 27 27 H 1.48502 * 109.46919 * 239.99769 * 24 22 20 28 28 C 1.47954 * 90.76430 * 24.68987 * 15 14 13 29 29 H 1.08992 * 109.47295 * 59.99738 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47207 * 299.99450 * 1 2 3 32 32 H 1.09004 * 109.46972 * 240.00052 * 2 1 3 33 33 H 1.09006 * 109.47163 * 120.00409 * 2 1 3 34 34 H 1.09002 * 110.48831 * 24.22029 * 5 3 2 35 35 H 1.09000 * 110.48680 * 261.56845 * 5 3 2 36 36 H 1.09000 * 110.75842 * 203.74153 * 6 5 3 37 37 H 1.08997 * 110.91361 * 80.44129 * 6 5 3 38 38 H 1.09002 * 110.48466 * 156.61749 * 7 6 5 39 39 H 1.08997 * 110.48576 * 279.13340 * 7 6 5 40 40 H 1.08999 * 109.47254 * 178.47666 * 9 8 3 41 41 H 1.08998 * 109.46432 * 298.47474 * 9 8 3 42 42 H 1.08998 * 109.47055 * 58.47399 * 9 8 3 43 43 H 0.97001 * 119.99707 * 4.95080 * 12 10 8 44 44 H 1.09004 * 112.93854 * 23.44126 * 13 12 10 45 45 H 1.08990 * 113.76243 * 336.24311 * 14 13 12 46 46 H 1.09008 * 113.75573 * 107.60743 * 14 13 12 47 47 H 1.08992 * 109.47318 * 190.64216 * 16 15 14 48 48 H 1.09002 * 109.46616 * 310.64263 * 16 15 14 49 49 H 0.97009 * 119.99895 * 0.02562 * 19 17 16 50 50 H 0.96998 * 119.99811 * 179.97438 * 23 22 20 51 51 H 1.09002 * 113.76159 * 220.98789 * 28 15 14 52 52 H 1.09003 * 113.75562 * 89.62769 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6407 1.9794 -0.8605 5 6 1.6221 2.1506 1.3053 6 6 2.8316 3.0544 1.6510 7 6 4.0415 2.1746 1.2497 8 6 3.5804 1.4549 -0.0346 9 6 4.0703 2.2174 -1.2673 10 6 4.1109 0.0445 -0.0548 11 8 4.6783 -0.4040 0.9189 12 7 3.9549 -0.7185 -1.1547 13 6 4.3727 -2.1225 -1.1376 14 6 5.6364 -2.4031 -1.9706 15 7 4.9400 -3.6238 -2.4336 16 6 5.1325 -3.8246 -3.8760 17 6 6.5612 -4.2241 -4.1414 18 8 7.3421 -4.3314 -3.2196 19 7 6.9711 -4.4621 -5.4030 20 6 8.2707 -4.8260 -5.6444 21 1 8.9660 -4.9216 -4.8236 22 6 8.6931 -5.0719 -6.9451 23 7 7.8468 -4.9561 -7.9438 24 14 10.4640 -5.5670 -7.2740 25 1 11.2081 -5.6258 -5.9904 26 1 10.4921 -6.9016 -7.9247 27 1 11.0996 -4.5667 -8.1688 28 6 3.6259 -3.0036 -2.1552 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.4521 1.4214 2.0974 35 1 0.7291 2.7541 1.1428 36 1 2.8539 3.2787 2.7175 37 1 2.8108 3.9732 1.0650 38 1 4.9141 2.7955 1.0467 39 1 4.2636 1.4508 2.0338 40 1 5.1599 2.2441 -1.2688 41 1 3.7178 1.7157 -2.1685 42 1 3.6819 3.2356 -1.2427 43 1 3.5659 -0.3379 -1.9577 44 1 4.4049 -2.5439 -0.1328 45 1 5.8133 -1.6725 -2.7598 46 1 6.5230 -2.6046 -1.3693 47 1 4.4642 -4.6115 -4.2256 48 1 4.9102 -2.8977 -4.4047 49 1 6.3466 -4.3759 -6.1403 50 1 8.1419 -5.1274 -8.8518 51 1 2.9060 -3.6849 -1.7014 52 1 3.2148 -2.4486 -2.9984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494407555.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:06 Heat of formation + Delta-G solvation = -76.273578 kcal Electronic energy + Delta-G solvation = -30185.130768 eV Core-core repulsion = 26183.891179 eV Total energy + Delta-G solvation = -4001.239589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10417 -41.03151 -39.57657 -38.43444 -36.00503 -35.29897 -34.12758 -33.32598 -32.36103 -30.81796 -28.46178 -27.40709 -27.10549 -26.75138 -25.23318 -23.55030 -22.67685 -21.37707 -21.21522 -21.02312 -19.94797 -19.87053 -17.92696 -17.69415 -17.64351 -16.69341 -16.62984 -16.57018 -16.20673 -16.00459 -15.65827 -15.49934 -15.19851 -14.87245 -14.55206 -14.38977 -14.25051 -13.78002 -13.65683 -13.54747 -13.45829 -13.31191 -13.27700 -13.16906 -12.90511 -12.85430 -12.47452 -12.41787 -12.30159 -12.15036 -12.12875 -11.85990 -11.82541 -11.52941 -11.49669 -11.47667 -11.33470 -11.27582 -10.71568 -10.36478 -10.04559 -10.02834 -9.72410 -8.49148 -5.97554 1.34247 1.39784 1.53741 1.61254 2.02505 2.06923 2.28006 2.84342 3.17164 3.21251 3.45066 3.51060 3.57603 3.68943 3.78797 3.99985 4.11231 4.22488 4.26419 4.28690 4.34424 4.36973 4.42158 4.46270 4.51932 4.53488 4.61403 4.68528 4.77388 4.78558 4.81646 4.89218 4.92130 4.98262 5.01081 5.07501 5.17045 5.18757 5.22791 5.29860 5.32697 5.32874 5.39057 5.41614 5.46210 5.49648 5.56676 5.85105 6.04161 6.53059 6.58322 7.11067 7.24626 7.53758 8.10449 8.68426 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021901 B = 0.002146 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.189499 B =13042.014437 C =13446.829291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.071 4.071 4 H 0.107 0.893 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.079 4.079 9 C -0.139 4.139 10 C 0.529 3.471 11 O -0.584 6.584 12 N -0.705 5.705 13 C 0.131 3.869 14 C 0.005 3.995 15 N -0.480 5.480 16 C 0.027 3.973 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.074 0.926 22 C -0.012 4.012 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.277 1.277 26 H -0.270 1.270 27 H -0.269 1.269 28 C 0.011 3.989 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.415 0.585 44 H 0.101 0.899 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.113 0.887 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.195 18.413 10.569 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.090 4.090 4 H 0.125 0.875 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.082 4.082 9 C -0.196 4.196 10 C 0.317 3.683 11 O -0.464 6.464 12 N -0.358 5.358 13 C 0.025 3.975 14 C -0.125 4.125 15 N -0.203 5.203 16 C -0.105 4.105 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.092 0.908 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.202 1.202 26 H -0.195 1.195 27 H -0.194 1.194 28 C -0.117 4.117 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.254 0.746 44 H 0.119 0.881 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.133 0.867 48 H 0.102 0.898 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.131 0.869 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.102 17.331 11.915 28.412 hybrid contribution 0.922 0.087 -1.241 1.548 sum -18.180 17.418 10.675 27.347 Atomic orbital electron populations 1.21731 0.94329 1.01767 1.02477 1.21969 0.97358 0.96019 1.01741 1.21933 0.90132 0.96596 1.00308 0.87495 1.22442 0.98515 0.98234 0.96199 1.22479 0.93344 0.98125 1.01563 1.22403 0.98980 0.98271 0.95646 1.21627 0.97629 0.90094 0.98885 1.21954 1.01049 1.01524 0.95079 1.21055 0.76853 0.88523 0.81830 1.90681 1.43960 1.75106 1.36641 1.46069 1.63634 1.10425 1.15674 1.22689 0.93455 0.81560 0.99843 1.24218 0.98360 0.91350 0.98606 1.68339 1.05960 1.31973 1.14066 1.22359 0.93563 1.03315 0.91258 1.20841 0.91087 0.82911 0.82681 1.90514 1.57525 1.58188 1.44606 1.41927 1.11208 1.60843 1.07074 1.19644 0.87969 1.45030 0.93580 0.90751 1.26002 1.03841 0.96886 0.94413 1.69666 1.36691 1.49376 1.00185 0.84904 0.77188 0.78368 0.78077 1.20161 1.19469 1.19386 1.24482 0.92883 0.96229 0.98144 0.91296 0.93087 0.92590 0.90441 0.94698 0.92766 0.89492 0.91317 0.89662 0.91324 0.92679 0.93297 0.90628 0.89184 0.74613 0.88132 0.90970 0.92704 0.86738 0.89755 0.76860 0.91236 0.86870 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.73 71.98 0.70 -0.80 16 2 C -0.13 -1.79 4.09 30.59 0.13 -1.66 16 3 C -0.07 -0.80 2.63 -10.00 -0.03 -0.83 16 4 H 0.11 0.74 7.68 -2.39 -0.02 0.72 16 5 C -0.12 -1.29 5.36 31.67 0.17 -1.12 16 6 C -0.12 -1.38 6.91 31.89 0.22 -1.16 16 7 C -0.12 -2.03 5.75 31.67 0.18 -1.85 16 8 C -0.08 -1.24 0.83 -52.13 -0.04 -1.28 16 9 C -0.14 -1.58 7.96 71.98 0.57 -1.01 16 10 C 0.53 12.22 4.76 87.66 0.42 12.64 16 11 O -0.58 -19.50 15.03 -3.06 -0.05 -19.55 16 12 N -0.71 -13.39 3.48 -446.13 -1.55 -14.94 16 13 C 0.13 3.23 4.40 46.56 0.20 3.43 16 14 C 0.01 0.16 6.56 86.40 0.57 0.73 16 15 N -0.48 -15.43 5.95 -912.92 -5.43 -20.86 16 16 C 0.03 0.89 5.31 85.56 0.45 1.34 16 17 C 0.44 21.10 7.59 87.66 0.67 21.77 16 18 O -0.62 -35.74 15.13 -3.07 -0.05 -35.78 16 19 N -0.57 -29.52 5.29 -306.99 -1.62 -31.14 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 21 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 23 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 24 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 C 0.01 0.23 7.73 86.41 0.67 0.90 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 7.36 -2.39 -0.02 0.54 16 32 H 0.08 0.97 5.58 -2.38 -0.01 0.95 16 33 H 0.03 0.68 7.52 -2.38 -0.02 0.67 16 34 H 0.05 0.77 7.79 -2.39 -0.02 0.75 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 1.17 7.84 -2.39 -0.02 1.15 16 39 H 0.05 1.33 6.79 -2.39 -0.02 1.32 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 0.62 7.10 -2.39 -0.02 0.60 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.42 5.16 7.05 -92.71 -0.65 4.51 16 44 H 0.10 2.98 7.52 -2.38 -0.02 2.96 16 45 H 0.07 2.25 7.78 -2.39 -0.02 2.23 16 46 H 0.05 2.24 8.09 -2.38 -0.02 2.23 16 47 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 48 H 0.08 2.31 7.69 -2.39 -0.02 2.29 16 49 H 0.40 19.14 7.90 -92.70 -0.73 18.41 16 50 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 51 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.11 1.47 7.77 -2.39 -0.02 1.45 16 Total: -1.00 -76.98 403.77 -0.69 -77.67 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -0.46 Total: 35.58 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 6.16 Total: 12.62 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -8.32 Total: -115.95 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -0.09 Total: -55.33 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -76.98 -0.69 -77.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494407555.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.394 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds