Wall clock time and date at job start Tue Mar 31 2020 19:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47327 * 2 1 4 4 H 1.09005 * 110.05842 * 305.04399 * 3 2 1 5 5 C 1.54264 * 110.03090 * 66.45515 * 3 2 1 6 6 C 1.54897 * 104.19493 * 142.89700 * 5 3 2 7 7 C 1.54889 * 102.74591 * 322.05796 * 6 5 3 8 8 C 1.53873 * 110.03450 * 183.62588 * 3 2 1 9 9 C 1.53002 * 110.03141 * 359.97438 * 8 3 2 10 10 C 1.50698 * 110.03570 * 121.43024 * 8 3 2 11 11 O 1.21278 * 119.99866 * 358.62101 * 10 8 3 12 12 N 1.34775 * 120.00068 * 178.61717 * 10 8 3 13 13 C 1.46504 * 119.99758 * 179.97438 * 12 10 8 14 14 C 1.53930 * 113.73295 * 251.72882 * 13 12 10 15 15 N 1.47959 * 86.18222 * 221.92238 * 14 13 12 16 16 C 1.46905 * 111.00047 * 137.58227 * 15 14 13 17 17 C 1.50694 * 109.46964 * 70.64146 * 16 15 14 18 18 O 1.21291 * 120.00379 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99953 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00366 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99406 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00208 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00226 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99772 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46993 * 60.00417 * 24 22 20 26 26 H 1.48497 * 109.47020 * 180.02562 * 24 22 20 27 27 H 1.48490 * 109.47576 * 300.00315 * 24 22 20 28 28 C 1.47965 * 90.76174 * 24.69337 * 15 14 13 29 29 H 1.09000 * 109.46928 * 299.99806 * 1 2 3 30 30 H 1.08998 * 109.47146 * 59.99711 * 1 2 3 31 31 H 1.09007 * 109.47016 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46928 * 240.00194 * 2 1 3 33 33 H 1.08998 * 109.47146 * 120.00289 * 2 1 3 34 34 H 1.08998 * 110.49036 * 24.22157 * 5 3 2 35 35 H 1.09000 * 110.49063 * 261.57197 * 5 3 2 36 36 H 1.09000 * 110.75568 * 80.37108 * 6 5 3 37 37 H 1.09002 * 110.75327 * 203.73969 * 6 5 3 38 38 H 1.08998 * 110.48466 * 156.62292 * 7 6 5 39 39 H 1.09000 * 110.48547 * 279.12998 * 7 6 5 40 40 H 1.08994 * 109.47166 * 301.38562 * 9 8 3 41 41 H 1.09005 * 109.46842 * 61.38444 * 9 8 3 42 42 H 1.09000 * 109.47019 * 181.38147 * 9 8 3 43 43 H 0.96994 * 120.00141 * 0.02562 * 12 10 8 44 44 H 1.08994 * 112.94000 * 23.44075 * 13 12 10 45 45 H 1.09000 * 113.76374 * 336.23991 * 14 13 12 46 46 H 1.08994 * 113.76197 * 107.60586 * 14 13 12 47 47 H 1.09002 * 109.46899 * 190.64241 * 16 15 14 48 48 H 1.09001 * 109.47212 * 310.64275 * 16 15 14 49 49 H 0.97000 * 120.00152 * 0.02562 * 19 17 16 50 50 H 0.97001 * 119.99775 * 179.97438 * 23 22 20 51 51 H 1.09005 * 113.75860 * 220.99349 * 28 15 14 52 52 H 1.08997 * 113.76099 * 89.62589 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6104 1.9909 -0.8383 5 6 1.6704 2.1336 1.3287 6 6 2.8919 3.0331 1.6416 7 6 4.0861 2.1588 1.1850 8 6 3.5760 1.4585 -0.0914 9 6 4.1123 0.0268 -0.1531 10 6 4.0125 2.2274 -1.3117 11 8 3.1829 2.6992 -2.0600 12 7 5.3249 2.3908 -1.5715 13 6 5.7493 3.1378 -2.7581 14 6 6.3514 2.2532 -3.8646 15 7 7.3680 3.3163 -4.0243 16 6 8.7095 2.7412 -4.1910 17 6 8.8088 2.0818 -5.5424 18 8 7.8561 2.0905 -6.2930 19 7 9.9567 1.4833 -5.9174 20 6 10.0474 0.8838 -7.1471 21 1 9.1990 0.8916 -7.8154 22 6 11.2309 0.2673 -7.5339 23 7 12.2633 0.2583 -6.7209 24 14 11.3541 -0.5501 -9.2091 25 1 11.1115 0.4590 -10.2712 26 1 12.7103 -1.1309 -9.3780 27 1 10.3383 -1.6285 -9.3097 28 6 7.1512 3.7604 -2.6296 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5292 1.3942 2.1170 35 1 0.7721 2.7390 1.2068 36 1 2.8480 3.9580 1.0664 37 1 2.9531 3.2436 2.7094 38 1 4.9508 2.7825 0.9583 39 1 4.3365 1.4250 1.9511 40 1 3.7918 -0.5197 0.7338 41 1 3.7258 -0.4678 -1.0442 42 1 5.2013 0.0483 -0.1929 43 1 5.9884 2.0131 -0.9732 44 1 4.9909 3.8345 -3.1152 45 1 6.7567 1.3092 -3.5003 46 1 5.7026 2.1322 -4.7320 47 1 9.4557 3.5323 -4.1170 48 1 8.8867 2.0003 -3.4114 49 1 10.7188 1.4766 -5.3173 50 1 13.0895 -0.1725 -6.9909 51 1 7.1413 4.8439 -2.5103 52 1 7.7904 3.2573 -1.9041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494407556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:10 Heat of formation + Delta-G solvation = -54.913257 kcal Electronic energy + Delta-G solvation = -29816.253596 eV Core-core repulsion = 25815.940260 eV Total energy + Delta-G solvation = -4000.313336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08291 -39.90398 -38.03525 -37.43134 -34.33382 -33.86944 -33.33625 -31.91513 -31.26495 -29.60749 -27.86653 -26.04225 -25.88866 -25.38332 -24.04661 -23.07712 -21.88392 -20.56256 -20.21940 -19.21862 -18.60564 -17.91497 -17.23288 -16.62187 -16.15694 -15.72589 -15.53933 -15.25620 -14.86530 -14.75498 -14.44862 -14.18416 -13.99517 -13.90749 -13.79355 -13.49926 -13.31776 -12.88675 -12.71791 -12.57218 -12.53331 -12.09647 -11.87478 -11.74531 -11.71198 -11.53543 -11.36879 -11.32376 -11.24262 -11.06121 -11.04997 -10.90475 -10.67210 -10.57916 -10.51415 -10.44468 -10.22045 -9.78054 -9.50731 -9.11353 -8.71251 -8.25988 -7.97573 -6.42809 -3.83599 2.51836 2.96686 3.19586 3.25154 3.29932 3.87600 4.00423 4.09707 4.17863 4.21626 4.35994 4.51518 4.73412 4.77729 4.87061 4.87877 4.96041 4.97642 5.03406 5.09017 5.17048 5.19726 5.28894 5.33435 5.35702 5.43406 5.44765 5.52655 5.54998 5.58526 5.64518 5.65191 5.66087 5.74239 5.77344 5.83533 5.86586 5.91921 5.96590 5.99586 6.08010 6.18039 6.25734 6.27809 6.42204 6.58979 7.13031 7.37585 7.54100 8.04311 8.11825 8.60150 9.16864 9.52540 10.04481 10.74875 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002071 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.559121 B =13519.380677 C =14088.675389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.083 4.083 4 H 0.098 0.902 5 C -0.116 4.116 6 C -0.126 4.126 7 C -0.113 4.113 8 C -0.082 4.082 9 C -0.141 4.141 10 C 0.527 3.473 11 O -0.534 6.534 12 N -0.719 5.719 13 C 0.114 3.886 14 C 0.011 3.989 15 N -0.449 5.449 16 C 0.013 3.987 17 C 0.443 3.557 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.009 4.009 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.399 0.601 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.053 0.947 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.095 0.905 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 1.641 22.392 27.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.102 4.102 4 H 0.116 0.884 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.150 4.150 8 C -0.085 4.085 9 C -0.198 4.198 10 C 0.313 3.687 11 O -0.410 6.410 12 N -0.370 5.370 13 C 0.009 3.991 14 C -0.119 4.119 15 N -0.172 5.172 16 C -0.119 4.119 17 C 0.228 3.772 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.233 0.767 44 H 0.141 0.859 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.114 0.886 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.462 2.370 20.739 26.585 hybrid contribution 1.442 -1.252 0.402 1.952 sum -15.020 1.118 21.141 25.958 Atomic orbital electron populations 1.21801 0.95976 1.01378 1.01906 1.21749 0.95744 0.96019 1.01980 1.21869 0.91945 0.96869 0.99494 0.88388 1.22428 0.97894 0.98322 0.96705 1.22499 0.94601 0.98394 1.00887 1.22487 0.98309 0.98787 0.95449 1.21441 0.97560 0.96047 0.93428 1.21999 1.00703 0.93945 1.03161 1.20490 0.82304 0.79517 0.86401 1.90673 1.51759 1.49144 1.49420 1.46056 1.07301 1.56269 1.27414 1.23127 0.96122 0.94704 0.85133 1.24292 0.94844 0.94133 0.98648 1.68383 1.03492 1.25021 1.20262 1.22450 0.92955 0.98987 0.97502 1.19667 0.84639 0.84394 0.88529 1.90535 1.37828 1.63155 1.54572 1.41857 1.12114 1.48986 1.17154 1.19651 0.99453 1.30692 0.93047 0.87988 1.25259 0.95023 0.97945 0.99717 1.69603 1.03327 1.44713 1.36759 0.85913 0.77185 0.79416 0.81695 1.19852 1.20970 1.19922 1.24436 0.95044 1.02335 0.92080 0.92776 0.92651 0.92960 0.91598 0.91872 0.91522 0.91600 0.91407 0.91336 0.91301 0.90397 0.90979 0.91564 0.92416 0.76680 0.85877 0.91372 0.88305 0.89001 0.92865 0.77522 0.91829 0.88629 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.75 37.16 0.36 -0.73 16 2 C -0.12 -0.89 4.10 -26.73 -0.11 -1.00 16 3 C -0.08 -0.72 2.54 -89.51 -0.23 -0.95 16 4 H 0.10 1.14 6.39 -51.93 -0.33 0.81 16 5 C -0.12 -0.83 5.46 -25.07 -0.14 -0.96 16 6 C -0.13 -0.88 6.91 -24.73 -0.17 -1.05 16 7 C -0.11 -0.75 5.84 -25.07 -0.15 -0.89 16 8 C -0.08 -0.69 0.77 -154.54 -0.12 -0.81 16 9 C -0.14 -1.02 7.09 37.16 0.26 -0.75 16 10 C 0.53 6.14 6.44 -10.99 -0.07 6.06 16 11 O -0.53 -8.38 14.81 5.56 0.08 -8.30 16 12 N -0.72 -7.40 4.95 -54.95 -0.27 -7.67 16 13 C 0.11 1.45 4.43 -69.63 -0.31 1.15 16 14 C 0.01 0.17 6.56 -2.77 -0.02 0.15 16 15 N -0.45 -7.45 5.95 -239.90 -1.43 -8.88 16 16 C 0.01 0.23 5.31 -4.98 -0.03 0.21 16 17 C 0.44 10.54 7.59 -10.99 -0.08 10.46 16 18 O -0.58 -15.89 15.13 5.55 0.08 -15.81 16 19 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 C -0.01 -0.11 7.73 -2.76 -0.02 -0.13 16 29 H 0.05 0.35 7.46 -51.93 -0.39 -0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 0.55 6.55 -51.93 -0.34 0.21 16 33 H 0.06 0.41 6.82 -51.93 -0.35 0.05 16 34 H 0.07 0.41 7.78 -51.93 -0.40 0.01 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.44 7.40 -51.93 -0.38 0.06 16 39 H 0.08 0.42 7.86 -51.93 -0.41 0.01 16 40 H 0.07 0.42 6.75 -51.93 -0.35 0.07 16 41 H 0.07 0.55 6.73 -51.93 -0.35 0.20 16 42 H 0.06 0.37 7.62 -51.93 -0.40 -0.02 16 43 H 0.40 3.09 7.97 -40.82 -0.33 2.76 16 44 H 0.12 1.77 7.46 -51.93 -0.39 1.38 16 45 H 0.07 1.06 7.78 -51.93 -0.40 0.66 16 46 H 0.10 1.86 8.09 -51.93 -0.42 1.44 16 47 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 48 H 0.05 0.82 7.69 -51.93 -0.40 0.42 16 49 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 LS Contribution 404.23 15.07 6.09 6.09 Total: -1.00 -33.22 404.23 -9.69 -42.91 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.84 Total: 10.99 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.05 Total: 2.72 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -1.03 Total: -54.76 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.22 -9.69 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494407556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.999 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds