Wall clock time and date at job start Tue Mar 31 2020 19:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47417 * 2 1 4 4 H 1.09008 * 110.01792 * 55.36602 * 3 2 1 5 5 C 1.54267 * 110.03596 * 293.97788 * 3 2 1 6 6 C 1.54884 * 104.19693 * 217.10756 * 5 3 2 7 7 C 1.54891 * 102.75267 * 37.93880 * 6 5 3 8 8 C 1.53879 * 110.03454 * 176.80881 * 3 2 1 9 9 C 1.52997 * 110.03199 * 238.57018 * 8 3 2 10 10 C 1.50701 * 110.02973 * 359.97438 * 8 3 2 11 11 O 1.21273 * 120.00296 * 247.65692 * 10 8 3 12 12 N 1.34782 * 119.99605 * 67.65469 * 10 8 3 13 13 C 1.46499 * 119.99819 * 185.03897 * 12 10 8 14 14 C 1.53933 * 113.73563 * 253.77004 * 13 12 10 15 15 N 1.48192 * 86.10117 * 221.95563 * 14 13 12 16 16 C 1.46904 * 111.06971 * 137.51934 * 15 14 13 17 17 C 1.50700 * 109.46949 * 90.56803 * 16 15 14 18 18 O 1.21293 * 119.99757 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99671 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99610 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00316 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00095 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00353 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99663 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47307 * 89.99685 * 24 22 20 26 26 H 1.48498 * 109.47032 * 209.99609 * 24 22 20 27 27 H 1.48500 * 109.47163 * 329.99743 * 24 22 20 28 28 C 1.47965 * 90.79946 * 24.60167 * 15 14 13 29 29 H 1.09002 * 109.46939 * 59.99653 * 1 2 3 30 30 H 1.08998 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47133 * 300.00495 * 1 2 3 32 32 H 1.09005 * 109.47084 * 239.99491 * 2 1 3 33 33 H 1.09002 * 109.46939 * 120.00347 * 2 1 3 34 34 H 1.09005 * 110.48298 * 335.78641 * 5 3 2 35 35 H 1.08998 * 110.48705 * 98.41953 * 5 3 2 36 36 H 1.09000 * 110.75893 * 156.25861 * 6 5 3 37 37 H 1.09010 * 110.75546 * 279.62088 * 6 5 3 38 38 H 1.08998 * 110.48182 * 80.73367 * 7 6 5 39 39 H 1.08998 * 110.48516 * 203.38278 * 7 6 5 40 40 H 1.09000 * 109.47080 * 59.99983 * 9 8 3 41 41 H 1.09004 * 109.46757 * 179.97438 * 9 8 3 42 42 H 1.08996 * 109.47237 * 299.99873 * 9 8 3 43 43 H 0.96997 * 120.00235 * 5.04916 * 12 10 8 44 44 H 1.09002 * 112.93595 * 25.34320 * 13 12 10 45 45 H 1.08997 * 113.76173 * 336.23808 * 14 13 12 46 46 H 1.08998 * 113.75920 * 107.60888 * 14 13 12 47 47 H 1.08998 * 109.46596 * 210.56831 * 16 15 14 48 48 H 1.09000 * 109.46709 * 330.56849 * 16 15 14 49 49 H 0.96998 * 120.00434 * 0.02562 * 19 17 16 50 50 H 0.96999 * 120.00234 * 180.02562 * 23 22 20 51 51 H 1.08999 * 113.76007 * 221.08859 * 28 15 14 52 52 H 1.08998 * 113.75998 * 89.71144 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6157 1.9883 0.8427 5 6 1.6610 2.1371 -1.3242 6 6 2.8803 3.0372 -1.6436 7 6 4.0777 2.1618 -1.1977 8 6 3.5767 1.4582 0.0805 9 6 4.0287 2.2357 1.3182 10 6 4.1052 0.0480 0.1351 11 8 4.6402 -0.3605 1.1439 12 7 3.9832 -0.7594 -0.9373 13 6 4.3962 -2.1622 -0.8487 14 6 5.7123 -2.4683 -1.5860 15 7 5.0432 -3.7038 -2.0571 16 6 5.3282 -3.9502 -3.4770 17 6 6.5635 -4.8045 -3.6005 18 8 7.1486 -5.1723 -2.6037 19 7 7.0175 -5.1606 -4.8185 20 6 8.1416 -5.9374 -4.9308 21 1 8.6630 -6.2642 -4.0433 22 6 8.6094 -6.3050 -6.1865 23 7 9.6871 -7.0491 -6.2943 24 14 7.7070 -5.7403 -7.7215 25 1 8.2610 -4.4376 -8.1704 26 1 7.8809 -6.7491 -8.7973 27 1 6.2618 -5.5851 -7.4173 28 6 3.7150 -3.0751 -1.8843 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5141 1.3996 -2.1134 35 1 0.7636 2.7420 -1.1944 36 1 2.9340 3.2504 -2.7112 37 1 2.8405 3.9607 -1.0658 38 1 4.3211 1.4283 -1.9664 39 1 4.9440 2.7849 -0.9756 40 1 3.6279 1.7593 2.2129 41 1 5.1176 2.2407 1.3664 42 1 3.6626 3.2605 1.2573 43 1 3.6222 -0.4116 -1.7676 44 1 4.3624 -2.5515 0.1688 45 1 5.9433 -1.7624 -2.3838 46 1 6.5561 -2.6511 -0.9206 47 1 4.4829 -4.4655 -3.9331 48 1 5.4915 -2.9997 -3.9850 49 1 6.5494 -4.8667 -5.6156 50 1 10.0139 -7.3055 -7.1708 51 1 2.9659 -3.7415 -1.4567 52 1 3.3606 -2.5469 -2.7694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494407558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:16 Heat of formation + Delta-G solvation = -42.133022 kcal Electronic energy + Delta-G solvation = -30270.819917 eV Core-core repulsion = 26271.060774 eV Total energy + Delta-G solvation = -3999.759143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34461 -39.90309 -38.10083 -37.62796 -34.30572 -33.87329 -33.63968 -31.67828 -31.56274 -29.93187 -28.06579 -26.46297 -26.16145 -25.32355 -23.65704 -22.83585 -21.96396 -20.84398 -20.29175 -19.37140 -19.23431 -18.36613 -17.11923 -16.65097 -16.16122 -15.93975 -15.42806 -15.25374 -15.04434 -14.91825 -14.80509 -14.36066 -14.07908 -13.76641 -13.46763 -13.36821 -12.99384 -12.95920 -12.81908 -12.75182 -12.68616 -12.38840 -12.24256 -12.16456 -11.94328 -11.71024 -11.57211 -11.47643 -11.31587 -11.18946 -11.04449 -11.00521 -10.84045 -10.76912 -10.73352 -10.60041 -9.96398 -9.84387 -9.55218 -9.13858 -8.84443 -8.31140 -8.16215 -6.29462 -3.80794 2.43988 2.88763 3.01674 3.05651 3.14328 3.75012 3.85486 4.05158 4.08184 4.10588 4.15418 4.37514 4.57110 4.72191 4.73364 4.76816 4.78587 4.85611 4.92608 4.99129 5.10614 5.11093 5.17738 5.21712 5.22115 5.27913 5.38072 5.44333 5.47637 5.49286 5.51194 5.54851 5.58356 5.62276 5.67940 5.71241 5.78446 5.80532 5.83085 5.90248 5.93090 5.96506 6.00140 6.06765 6.31600 6.43781 6.99562 7.29245 7.59566 8.05765 8.16138 8.62215 8.97418 9.44084 9.86145 10.83897 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.002288 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.034214 B =12237.017576 C =12448.679753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.077 4.077 4 H 0.082 0.918 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.082 4.082 9 C -0.124 4.124 10 C 0.531 3.469 11 O -0.534 6.534 12 N -0.722 5.722 13 C 0.119 3.881 14 C -0.001 4.001 15 N -0.444 5.444 16 C 0.010 3.990 17 C 0.455 3.545 18 O -0.554 6.554 19 N -0.594 5.594 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.880 3.120 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.008 4.008 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.399 0.601 44 H 0.123 0.877 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.058 0.942 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.097 0.903 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 23.087 7.206 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.096 4.096 4 H 0.100 0.900 5 C -0.157 4.157 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.085 4.085 9 C -0.182 4.182 10 C 0.318 3.682 11 O -0.410 6.410 12 N -0.375 5.375 13 C 0.014 3.986 14 C -0.131 4.131 15 N -0.167 5.167 16 C -0.122 4.122 17 C 0.240 3.760 18 O -0.435 6.435 19 N -0.235 5.235 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.138 4.138 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.235 0.765 44 H 0.141 0.859 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.202 0.798 50 H 0.083 0.917 51 H 0.115 0.885 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.184 21.756 8.800 30.954 hybrid contribution -0.854 1.119 -2.432 2.809 sum -21.038 22.875 6.369 31.724 Atomic orbital electron populations 1.21766 0.95548 1.01739 1.01687 1.22002 0.96325 0.95686 1.02974 1.21880 0.91890 0.96867 0.98975 0.89971 1.22493 0.98096 0.98550 0.96607 1.22508 0.94164 0.98223 1.01238 1.22544 0.98751 0.98926 0.95270 1.21566 0.96374 0.92407 0.98201 1.21682 1.01895 0.98753 0.95852 1.20417 0.77688 0.87180 0.82930 1.90719 1.42497 1.76077 1.31666 1.46275 1.65744 1.10755 1.14709 1.23014 0.94505 0.79822 1.01245 1.24525 0.98513 0.90757 0.99284 1.68395 1.02483 1.29133 1.16672 1.22502 0.99226 0.99833 0.90672 1.19566 0.86959 0.85470 0.84020 1.90579 1.59323 1.57334 1.36251 1.42214 1.26926 1.48392 1.05920 1.19430 1.01638 1.26104 0.96035 0.86311 1.25033 0.96432 0.97074 0.97696 1.69619 1.22094 1.35874 1.24695 0.86671 0.79668 0.79384 0.83633 1.19718 1.20188 1.19557 1.24418 0.95051 0.96388 0.97915 0.92606 0.92684 0.92926 0.90713 0.91768 0.91237 0.91277 0.91120 0.91169 0.91191 0.90592 0.91789 0.92009 0.92010 0.76522 0.85891 0.91190 0.88384 0.89202 0.92383 0.79844 0.91651 0.88450 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.75 37.16 0.36 -0.52 16 2 C -0.13 -0.91 4.03 -26.73 -0.11 -1.02 16 3 C -0.08 -0.47 2.60 -89.50 -0.23 -0.71 16 4 H 0.08 0.51 7.68 -51.92 -0.40 0.11 16 5 C -0.12 -0.56 5.44 -25.07 -0.14 -0.70 16 6 C -0.12 -0.58 6.91 -24.74 -0.17 -0.75 16 7 C -0.12 -0.72 5.78 -25.07 -0.14 -0.87 16 8 C -0.08 -0.63 0.83 -154.54 -0.13 -0.76 16 9 C -0.12 -1.00 7.47 37.16 0.28 -0.72 16 10 C 0.53 5.66 4.73 -10.98 -0.05 5.61 16 11 O -0.53 -8.03 15.72 5.56 0.09 -7.94 16 12 N -0.72 -6.49 3.32 -54.94 -0.18 -6.67 16 13 C 0.12 1.36 4.36 -69.63 -0.30 1.06 16 14 C 0.00 -0.01 7.77 -2.63 -0.02 -0.03 16 15 N -0.44 -6.95 5.65 -239.67 -1.35 -8.30 16 16 C 0.01 0.16 5.28 -4.97 -0.03 0.14 16 17 C 0.45 10.50 7.83 -10.99 -0.09 10.42 16 18 O -0.55 -15.40 16.01 5.55 0.09 -15.31 16 19 N -0.59 -14.28 5.09 -10.96 -0.06 -14.34 16 20 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 24 Si 0.88 19.37 27.74 -169.99 -4.71 14.66 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 28 C -0.01 -0.08 7.70 -2.75 -0.02 -0.11 16 29 H 0.05 0.28 7.44 -51.93 -0.39 -0.11 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.49 5.59 -51.93 -0.29 0.20 16 33 H 0.06 0.59 7.33 -51.93 -0.38 0.21 16 34 H 0.07 0.31 7.79 -51.93 -0.40 -0.10 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.07 0.42 6.52 -51.93 -0.34 0.09 16 39 H 0.08 0.48 7.84 -51.93 -0.41 0.07 16 40 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.40 2.64 6.74 -40.82 -0.28 2.37 16 44 H 0.12 1.64 7.57 -51.93 -0.39 1.25 16 45 H 0.07 0.91 7.49 -51.93 -0.39 0.52 16 46 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 47 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 48 H 0.06 0.80 7.39 -51.93 -0.38 0.42 16 49 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 50 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 51 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 LS Contribution 402.51 15.07 6.07 6.07 Total: -1.00 -35.25 402.51 -9.22 -44.47 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.89 Total: 9.38 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.04 Total: 3.23 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.82 Total: -54.56 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.18 Total: -23.25 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.25 -9.22 -44.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494407558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.342 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds