Wall clock time and date at job start Tue Mar 31 2020 19:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47417 * 2 1 4 4 H 1.09008 * 110.01792 * 55.36602 * 3 2 1 5 5 C 1.54267 * 110.03596 * 293.97788 * 3 2 1 6 6 C 1.54884 * 104.19693 * 217.10756 * 5 3 2 7 7 C 1.54891 * 102.75267 * 37.93880 * 6 5 3 8 8 C 1.53879 * 110.03454 * 176.80881 * 3 2 1 9 9 C 1.52997 * 110.03199 * 238.57018 * 8 3 2 10 10 C 1.50701 * 110.02973 * 359.97438 * 8 3 2 11 11 O 1.21273 * 120.00296 * 247.65692 * 10 8 3 12 12 N 1.34782 * 119.99605 * 67.65469 * 10 8 3 13 13 C 1.46499 * 119.99819 * 185.03897 * 12 10 8 14 14 C 1.53933 * 113.73563 * 253.77004 * 13 12 10 15 15 N 1.48192 * 86.10117 * 221.95563 * 14 13 12 16 16 C 1.46904 * 111.06971 * 137.51934 * 15 14 13 17 17 C 1.50700 * 109.46949 * 90.56803 * 16 15 14 18 18 O 1.21293 * 119.99757 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99671 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99610 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00316 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00095 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00353 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99663 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47307 * 89.99685 * 24 22 20 26 26 H 1.48498 * 109.47032 * 209.99609 * 24 22 20 27 27 H 1.48500 * 109.47163 * 329.99743 * 24 22 20 28 28 C 1.47965 * 90.79946 * 24.60167 * 15 14 13 29 29 H 1.09002 * 109.46939 * 59.99653 * 1 2 3 30 30 H 1.08998 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47133 * 300.00495 * 1 2 3 32 32 H 1.09005 * 109.47084 * 239.99491 * 2 1 3 33 33 H 1.09002 * 109.46939 * 120.00347 * 2 1 3 34 34 H 1.09005 * 110.48298 * 335.78641 * 5 3 2 35 35 H 1.08998 * 110.48705 * 98.41953 * 5 3 2 36 36 H 1.09000 * 110.75893 * 156.25861 * 6 5 3 37 37 H 1.09010 * 110.75546 * 279.62088 * 6 5 3 38 38 H 1.08998 * 110.48182 * 80.73367 * 7 6 5 39 39 H 1.08998 * 110.48516 * 203.38278 * 7 6 5 40 40 H 1.09000 * 109.47080 * 59.99983 * 9 8 3 41 41 H 1.09004 * 109.46757 * 179.97438 * 9 8 3 42 42 H 1.08996 * 109.47237 * 299.99873 * 9 8 3 43 43 H 0.96997 * 120.00235 * 5.04916 * 12 10 8 44 44 H 1.09002 * 112.93595 * 25.34320 * 13 12 10 45 45 H 1.08997 * 113.76173 * 336.23808 * 14 13 12 46 46 H 1.08998 * 113.75920 * 107.60888 * 14 13 12 47 47 H 1.08998 * 109.46596 * 210.56831 * 16 15 14 48 48 H 1.09000 * 109.46709 * 330.56849 * 16 15 14 49 49 H 0.96998 * 120.00434 * 0.02562 * 19 17 16 50 50 H 0.96999 * 120.00234 * 180.02562 * 23 22 20 51 51 H 1.08999 * 113.76007 * 221.08859 * 28 15 14 52 52 H 1.08998 * 113.75998 * 89.71144 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6157 1.9883 0.8427 5 6 1.6610 2.1371 -1.3242 6 6 2.8803 3.0372 -1.6436 7 6 4.0777 2.1618 -1.1977 8 6 3.5767 1.4582 0.0805 9 6 4.0287 2.2357 1.3182 10 6 4.1052 0.0480 0.1351 11 8 4.6402 -0.3605 1.1439 12 7 3.9832 -0.7594 -0.9373 13 6 4.3962 -2.1622 -0.8487 14 6 5.7123 -2.4683 -1.5860 15 7 5.0432 -3.7038 -2.0571 16 6 5.3282 -3.9502 -3.4770 17 6 6.5635 -4.8045 -3.6005 18 8 7.1486 -5.1723 -2.6037 19 7 7.0175 -5.1606 -4.8185 20 6 8.1416 -5.9374 -4.9308 21 1 8.6630 -6.2642 -4.0433 22 6 8.6094 -6.3050 -6.1865 23 7 9.6871 -7.0491 -6.2943 24 14 7.7070 -5.7403 -7.7215 25 1 8.2610 -4.4376 -8.1704 26 1 7.8809 -6.7491 -8.7973 27 1 6.2618 -5.5851 -7.4173 28 6 3.7150 -3.0751 -1.8843 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5141 1.3996 -2.1134 35 1 0.7636 2.7420 -1.1944 36 1 2.9340 3.2504 -2.7112 37 1 2.8405 3.9607 -1.0658 38 1 4.3211 1.4283 -1.9664 39 1 4.9440 2.7849 -0.9756 40 1 3.6279 1.7593 2.2129 41 1 5.1176 2.2407 1.3664 42 1 3.6626 3.2605 1.2573 43 1 3.6222 -0.4116 -1.7676 44 1 4.3624 -2.5515 0.1688 45 1 5.9433 -1.7624 -2.3838 46 1 6.5561 -2.6511 -0.9206 47 1 4.4829 -4.4655 -3.9331 48 1 5.4915 -2.9997 -3.9850 49 1 6.5494 -4.8667 -5.6156 50 1 10.0139 -7.3055 -7.1708 51 1 2.9659 -3.7415 -1.4567 52 1 3.3606 -2.5469 -2.7694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494407558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:15 Heat of formation + Delta-G solvation = -69.382211 kcal Electronic energy + Delta-G solvation = -30272.001530 eV Core-core repulsion = 26271.060774 eV Total energy + Delta-G solvation = -4000.940756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.13834 -40.99053 -39.70408 -38.55240 -36.01101 -35.12624 -34.19974 -33.75861 -32.13186 -31.17683 -28.50231 -27.63942 -27.16040 -26.57282 -24.92703 -23.47455 -22.72748 -21.50477 -21.26711 -21.03419 -20.26130 -20.00390 -17.93828 -17.77952 -17.60404 -16.74907 -16.63707 -16.53056 -16.11423 -15.86779 -15.69390 -15.32220 -15.22381 -14.87416 -14.69261 -14.46011 -14.27054 -14.08895 -13.81610 -13.74238 -13.47323 -13.36539 -13.24568 -13.06192 -12.88549 -12.73926 -12.45618 -12.43990 -12.41344 -12.07223 -11.98185 -11.86196 -11.84424 -11.54706 -11.50514 -11.45938 -11.32947 -11.25445 -10.72427 -10.46658 -10.24989 -10.02907 -9.68325 -8.41228 -6.02740 1.29624 1.36150 1.45354 1.60039 1.97049 2.05239 2.23638 2.67525 3.13672 3.15481 3.48394 3.51080 3.58958 3.62238 3.77750 3.99417 4.07693 4.19145 4.22007 4.25669 4.31119 4.36294 4.38876 4.45252 4.47017 4.50712 4.61859 4.68248 4.74638 4.78641 4.79544 4.91199 4.93581 4.95070 5.02406 5.07856 5.18142 5.21466 5.25899 5.32076 5.33897 5.34527 5.39999 5.44510 5.47986 5.53765 5.57312 5.88660 5.99918 6.53317 6.60123 6.88879 7.25619 7.40168 7.99462 8.76900 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.002288 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.034214 B =12237.017576 C =12448.679753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.073 4.073 4 H 0.082 0.918 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.079 4.079 9 C -0.124 4.124 10 C 0.528 3.472 11 O -0.587 6.587 12 N -0.704 5.704 13 C 0.131 3.869 14 C -0.006 4.006 15 N -0.487 5.487 16 C 0.024 3.976 17 C 0.449 3.551 18 O -0.614 6.614 19 N -0.592 5.592 20 C -0.330 4.330 21 H 0.049 0.951 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.227 1.227 28 C 0.013 3.987 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.416 0.584 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.054 0.946 47 H 0.125 0.875 48 H 0.097 0.903 49 H 0.391 0.609 50 H 0.279 0.721 51 H 0.108 0.892 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.586 26.100 3.590 36.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.092 4.092 4 H 0.100 0.900 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.082 4.082 9 C -0.182 4.182 10 C 0.317 3.683 11 O -0.466 6.466 12 N -0.357 5.357 13 C 0.025 3.975 14 C -0.136 4.136 15 N -0.210 5.210 16 C -0.108 4.108 17 C 0.237 3.763 18 O -0.498 6.498 19 N -0.234 5.234 20 C -0.459 4.459 21 H 0.068 0.932 22 C -0.217 4.217 23 N -0.578 5.578 24 Si 0.789 3.211 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.151 1.151 28 C -0.115 4.115 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.255 0.745 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.073 0.927 47 H 0.143 0.857 48 H 0.115 0.885 49 H 0.226 0.774 50 H 0.088 0.912 51 H 0.126 0.874 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.540 24.801 5.163 35.270 hybrid contribution 0.592 0.129 -1.121 1.274 sum -23.948 24.930 4.041 34.805 Atomic orbital electron populations 1.21742 0.94486 1.01783 1.02397 1.21962 0.97217 0.95880 1.01694 1.21871 0.90296 0.96654 1.00376 0.89986 1.22487 0.98472 0.98706 0.95471 1.22494 0.93004 0.97932 1.02048 1.22577 0.99475 0.99177 0.94261 1.21608 0.97593 0.90142 0.98894 1.21683 1.00790 1.00062 0.95614 1.21060 0.76633 0.88356 0.82283 1.90702 1.44932 1.77239 1.33727 1.46068 1.64915 1.09583 1.15150 1.22609 0.93446 0.81328 1.00123 1.24522 0.98360 0.91122 0.99623 1.68297 1.05476 1.30670 1.16561 1.22457 0.96141 1.00237 0.91950 1.21030 0.88152 0.84495 0.82661 1.90558 1.61598 1.59338 1.38276 1.42022 1.25903 1.48127 1.07387 1.18984 1.03861 1.28545 0.94533 0.93239 1.26192 0.97158 0.96290 1.02014 1.69817 1.24346 1.37311 1.26325 0.85311 0.80160 0.79084 0.76587 1.18011 1.20102 1.15050 1.24460 0.92765 0.95635 0.98655 0.90980 0.93013 0.93111 0.90091 0.94895 0.90148 0.90122 0.89822 0.90804 0.90666 0.90976 0.93503 0.93692 0.89642 0.74471 0.88626 0.89280 0.92691 0.85678 0.88514 0.77370 0.91151 0.87401 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.75 71.98 0.70 -0.65 16 2 C -0.13 -1.55 4.03 30.59 0.12 -1.42 16 3 C -0.07 -0.73 2.60 -10.07 -0.03 -0.76 16 4 H 0.08 0.85 7.68 -2.38 -0.02 0.83 16 5 C -0.11 -0.59 5.44 31.67 0.17 -0.42 16 6 C -0.12 -0.64 6.91 31.88 0.22 -0.42 16 7 C -0.12 -1.14 5.78 31.67 0.18 -0.96 16 8 C -0.08 -1.12 0.83 -52.20 -0.04 -1.16 16 9 C -0.12 -1.99 7.47 71.98 0.54 -1.45 16 10 C 0.53 11.19 4.73 87.66 0.41 11.61 16 11 O -0.59 -18.73 15.72 -3.01 -0.05 -18.78 16 12 N -0.70 -11.44 3.32 -446.12 -1.48 -12.92 16 13 C 0.13 2.89 4.36 46.56 0.20 3.10 16 14 C -0.01 -0.17 7.77 86.36 0.67 0.50 16 15 N -0.49 -14.44 5.65 -912.17 -5.15 -19.60 16 16 C 0.02 0.70 5.28 85.56 0.45 1.15 16 17 C 0.45 20.69 7.83 87.66 0.69 21.38 16 18 O -0.61 -35.90 16.01 -3.07 -0.05 -35.94 16 19 N -0.59 -28.08 5.09 -306.98 -1.56 -29.64 16 20 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 21 H 0.05 3.56 7.39 -2.91 -0.02 3.53 16 22 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 23 N -0.94 -57.29 13.96 21.66 0.30 -56.99 16 24 Si 0.97 38.40 27.74 68.60 1.90 40.30 16 25 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 28 C 0.01 0.24 7.70 86.41 0.67 0.90 16 29 H 0.07 0.45 7.44 -2.39 -0.02 0.43 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 0.82 5.59 -2.38 -0.01 0.80 16 33 H 0.03 0.60 7.33 -2.39 -0.02 0.58 16 34 H 0.08 0.29 7.79 -2.38 -0.02 0.27 16 35 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.07 0.65 6.52 -2.39 -0.02 0.64 16 39 H 0.07 0.78 7.84 -2.39 -0.02 0.76 16 40 H 0.05 0.89 8.06 -2.39 -0.02 0.88 16 41 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.42 3.93 6.74 -92.71 -0.62 3.30 16 44 H 0.10 2.69 7.57 -2.39 -0.02 2.67 16 45 H 0.09 2.13 7.49 -2.39 -0.02 2.11 16 46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.13 2.83 8.08 -2.39 -0.02 2.81 16 48 H 0.10 2.13 7.39 -2.39 -0.02 2.11 16 49 H 0.39 14.92 5.76 -92.71 -0.53 14.39 16 50 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 51 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.11 1.11 7.89 -2.39 -0.02 1.09 16 Total: -1.00 -87.91 402.51 -0.10 -88.01 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.29 Total: 33.57 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.28 Total: 11.99 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -7.89 Total: -119.15 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.10 Total: -54.72 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.30 kcal Total: -87.91 -0.10 -88.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494407558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.628 kcal (2) G-P(sol) polarization free energy of solvation -87.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds