Wall clock time and date at job start Tue Mar 31 2020 19:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 H 1.09002 * 109.47103 * 304.99792 * 3 2 1 5 5 C 1.52997 * 109.47482 * 65.00040 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 3 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 C 1.52999 * 109.46961 * 185.00400 * 3 2 1 10 10 H 1.09000 * 109.47486 * 59.99547 * 9 3 2 11 11 C 1.50706 * 109.46953 * 299.99609 * 9 3 2 12 12 O 1.21279 * 119.99692 * 0.02562 * 11 9 3 13 13 N 1.34777 * 120.00146 * 180.02562 * 11 9 3 14 14 C 1.46496 * 119.99875 * 180.02562 * 13 11 9 15 15 C 1.53944 * 113.73251 * 251.72166 * 14 13 11 16 16 N 1.47957 * 86.18117 * 221.92342 * 15 14 13 17 17 C 1.46895 * 111.00240 * 137.58460 * 16 15 14 18 18 C 1.50703 * 109.47067 * 70.63541 * 17 16 15 19 19 O 1.21293 * 119.99823 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00027 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00103 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99797 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00070 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99996 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00268 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46722 * 89.99973 * 25 23 21 27 27 H 1.48500 * 109.47205 * 210.00384 * 25 23 21 28 28 H 1.48500 * 109.46828 * 330.00359 * 25 23 21 29 29 C 1.47962 * 90.76525 * 24.68837 * 16 15 14 30 30 H 1.09001 * 109.46924 * 300.00271 * 1 2 3 31 31 H 1.09000 * 109.47104 * 59.99686 * 1 2 3 32 32 H 1.08993 * 109.47832 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46511 * 239.99535 * 2 1 3 34 34 H 1.09001 * 109.46580 * 120.00304 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 38 38 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 39 39 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 41 41 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 42 42 H 1.09001 * 109.47289 * 180.02562 * 8 7 6 43 43 H 0.96999 * 120.00043 * 359.97438 * 13 11 9 44 44 H 1.08995 * 112.94273 * 23.42973 * 14 13 11 45 45 H 1.09001 * 113.75743 * 336.24085 * 15 14 13 46 46 H 1.09000 * 113.75246 * 107.60119 * 15 14 13 47 47 H 1.08999 * 109.47656 * 190.63784 * 17 16 15 48 48 H 1.09004 * 109.47176 * 310.64179 * 17 16 15 49 49 H 0.97002 * 119.99781 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99954 * 179.97438 * 24 23 21 51 51 H 1.08999 * 113.75675 * 220.99480 * 29 16 15 52 52 H 1.09001 * 113.75521 * 89.62821 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1449 3.5692 1.3069 7 6 3.6697 3.5715 1.1809 8 6 4.0744 2.8874 -0.1264 9 6 3.5648 1.4442 -0.1258 10 1 3.8532 0.9568 -1.0572 11 6 4.1657 0.6989 1.0381 12 8 3.4453 0.2138 1.8845 13 7 5.5037 0.5715 1.1384 14 6 6.0878 -0.1534 2.2695 15 6 6.7956 0.7566 3.2897 16 7 7.8517 -0.2787 3.3317 17 6 9.1878 0.3319 3.3316 18 6 9.4320 1.0061 4.6571 19 8 8.5773 0.9801 5.5173 20 7 10.6002 1.6381 4.8866 21 6 10.8222 2.2519 6.0922 22 1 10.0612 2.2287 6.8582 23 6 12.0267 2.9029 6.3289 24 7 12.9529 2.9306 5.3971 25 14 12.3295 3.7387 7.9719 26 1 12.9526 2.7722 8.9114 27 1 13.2384 4.8969 7.7779 28 1 11.0381 4.2113 8.5322 29 6 7.4800 -0.7413 1.9763 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.0699 1.5875 2.1491 36 1 0.5490 2.1253 1.3968 37 1 1.7100 4.1079 0.4652 38 1 1.8569 4.0564 2.2385 39 1 4.0328 4.5992 1.1811 40 1 4.1046 3.0326 2.0227 41 1 3.6394 3.4262 -0.9682 42 1 5.1607 2.8886 -0.2160 43 1 6.0799 0.9592 0.4612 44 1 5.3968 -0.8659 2.7199 45 1 7.1288 1.7072 2.8732 46 1 6.2530 0.8690 4.2284 47 1 9.9403 -0.4405 3.1728 48 1 9.2500 1.0698 2.5318 49 1 11.2835 1.6591 4.1985 50 1 13.7936 3.3854 5.5622 51 1 7.4844 -1.8256 1.8658 52 1 8.0134 -0.2287 1.1758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494473471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:19 Heat of formation + Delta-G solvation = -58.998071 kcal Electronic energy + Delta-G solvation = -30142.813437 eV Core-core repulsion = 26142.322971 eV Total energy + Delta-G solvation = -4000.490466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08687 -39.86998 -37.87754 -37.17233 -34.61886 -33.95119 -33.59600 -31.49804 -31.22096 -29.54221 -29.18340 -26.01943 -25.63909 -24.29923 -23.92149 -22.96055 -21.29931 -20.84037 -20.30457 -19.42457 -19.19304 -17.91378 -16.85082 -16.45515 -16.16456 -15.99577 -15.40681 -15.22569 -14.82835 -14.60940 -14.44150 -14.21340 -13.90074 -13.77608 -13.68204 -13.50246 -13.27556 -12.95963 -12.74148 -12.55495 -12.34588 -12.25492 -12.02341 -11.75649 -11.71788 -11.60297 -11.51257 -11.28780 -11.20046 -11.08056 -10.96040 -10.68076 -10.59052 -10.40275 -10.22797 -10.21097 -10.17007 -9.52082 -9.46698 -9.06289 -8.70568 -8.26103 -7.97797 -6.43190 -3.83927 2.52766 3.00617 3.17027 3.25684 3.31721 3.87389 4.01031 4.19339 4.28996 4.42546 4.43094 4.53335 4.80920 4.86852 4.89843 4.94422 4.97919 5.03649 5.14737 5.19575 5.21281 5.27091 5.28981 5.32248 5.44631 5.46144 5.49624 5.59854 5.64873 5.65638 5.69053 5.74019 5.77585 5.83689 5.94365 5.95788 6.02445 6.03225 6.07144 6.18095 6.21255 6.26241 6.32153 6.37599 6.55770 6.60161 7.13063 7.38940 7.53990 8.04198 8.16310 8.59795 9.16660 9.52290 10.04126 10.74557 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002224 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.535632 B =12587.928972 C =13232.172000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C -0.061 4.061 4 H 0.070 0.930 5 C -0.130 4.130 6 C -0.119 4.119 7 C -0.125 4.125 8 C -0.109 4.109 9 C -0.106 4.106 10 H 0.094 0.906 11 C 0.523 3.477 12 O -0.527 6.527 13 N -0.722 5.722 14 C 0.115 3.885 15 C 0.011 3.989 16 N -0.449 5.449 17 C 0.013 3.987 18 C 0.443 3.557 19 O -0.577 6.577 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.010 4.010 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.398 0.602 44 H 0.124 0.876 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.053 0.947 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.095 0.905 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.938 -2.006 -18.157 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.080 4.080 4 H 0.088 0.912 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.162 4.162 8 C -0.147 4.147 9 C -0.127 4.127 10 H 0.112 0.888 11 C 0.310 3.690 12 O -0.403 6.403 13 N -0.373 5.373 14 C 0.010 3.990 15 C -0.119 4.119 16 N -0.172 5.172 17 C -0.119 4.119 18 C 0.228 3.772 19 O -0.461 6.461 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.232 0.768 44 H 0.141 0.859 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.113 0.887 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.799 -2.747 -16.392 25.092 hybrid contribution 1.355 1.325 -0.741 2.035 sum -17.444 -1.422 -17.133 24.492 Atomic orbital electron populations 1.21778 0.96255 1.01214 1.01433 1.21830 0.95671 0.96320 1.03244 1.20916 0.91846 0.96726 0.98515 0.91191 1.21899 1.00552 0.95231 0.99044 1.21534 0.95312 0.97324 1.01438 1.21581 0.96539 1.00690 0.97437 1.21540 1.00608 0.93584 0.98987 1.21467 0.97349 0.96588 0.97315 0.88837 1.20593 0.82000 0.79360 0.87059 1.90581 1.59597 1.48082 1.42078 1.46142 1.07068 1.56908 1.27177 1.23102 0.93931 0.95088 0.86882 1.24286 0.93147 0.94293 1.00149 1.68374 1.01529 1.24962 1.22309 1.22449 0.93261 0.98670 0.97519 1.19673 0.84187 0.84322 0.89021 1.90535 1.45118 1.63775 1.46647 1.41865 1.14493 1.47677 1.16108 1.19696 1.01315 1.29243 0.92507 0.87936 1.25260 0.95403 0.97984 0.99331 1.69612 1.07003 1.44054 1.33717 0.85857 0.78424 0.78596 0.81424 1.20363 1.20932 1.19420 1.24435 0.94475 1.02363 0.92674 0.92505 0.93410 0.93143 0.93053 0.88969 0.88839 0.92240 0.92465 0.92118 0.91727 0.91678 0.90836 0.91588 0.76783 0.85863 0.91427 0.88368 0.89025 0.92883 0.77528 0.91887 0.88678 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.13 -1.21 5.03 -26.73 -0.13 -1.34 16 3 C -0.06 -0.52 1.93 -90.63 -0.18 -0.69 16 4 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.13 -1.26 4.69 -26.73 -0.13 -1.38 16 6 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 7 C -0.12 -1.13 5.70 -26.73 -0.15 -1.28 16 8 C -0.11 -0.79 5.36 -26.70 -0.14 -0.93 16 9 C -0.11 -0.84 2.55 -91.74 -0.23 -1.07 16 10 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 11 C 0.52 5.55 5.36 -10.98 -0.06 5.49 16 12 O -0.53 -7.29 10.96 5.56 0.06 -7.23 16 13 N -0.72 -6.96 5.26 -54.93 -0.29 -7.25 16 14 C 0.12 1.40 4.43 -69.62 -0.31 1.10 16 15 C 0.01 0.17 6.56 -2.76 -0.02 0.16 16 16 N -0.45 -7.35 5.95 -239.87 -1.43 -8.78 16 17 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 18 C 0.44 10.49 7.59 -10.98 -0.08 10.40 16 19 O -0.58 -15.80 15.13 5.55 0.08 -15.72 16 20 N -0.56 -14.31 5.29 -10.96 -0.06 -14.36 16 21 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 25 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 C -0.01 -0.11 7.73 -2.76 -0.02 -0.13 16 30 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.07 5.64 -51.93 -0.29 0.78 16 35 H 0.09 1.17 5.51 -51.93 -0.29 0.88 16 36 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.42 7.57 -51.93 -0.39 0.03 16 43 H 0.40 2.87 8.15 -40.82 -0.33 2.54 16 44 H 0.12 1.70 7.46 -51.93 -0.39 1.31 16 45 H 0.07 1.04 7.78 -51.93 -0.40 0.63 16 46 H 0.10 1.81 8.09 -51.93 -0.42 1.39 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 48 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 49 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 52 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.30 398.45 -10.30 -42.60 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -8.86 Total: 11.92 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.52 Total: 0.47 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -1.05 Total: -54.15 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.14 Total: -22.94 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.30 -10.30 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494473471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.399 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds