Wall clock time and date at job start Tue Mar 31 2020 19:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 H 1.09002 * 109.47103 * 304.99792 * 3 2 1 5 5 C 1.52997 * 109.47482 * 65.00040 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 3 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 C 1.52999 * 109.46961 * 185.00400 * 3 2 1 10 10 H 1.09000 * 109.47486 * 59.99547 * 9 3 2 11 11 C 1.50706 * 109.46953 * 299.99609 * 9 3 2 12 12 O 1.21279 * 119.99692 * 0.02562 * 11 9 3 13 13 N 1.34777 * 120.00146 * 180.02562 * 11 9 3 14 14 C 1.46496 * 119.99875 * 180.02562 * 13 11 9 15 15 C 1.53944 * 113.73251 * 251.72166 * 14 13 11 16 16 N 1.47957 * 86.18117 * 221.92342 * 15 14 13 17 17 C 1.46895 * 111.00240 * 137.58460 * 16 15 14 18 18 C 1.50703 * 109.47067 * 70.63541 * 17 16 15 19 19 O 1.21293 * 119.99823 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00027 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00103 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99797 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00070 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99996 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00268 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.46722 * 89.99973 * 25 23 21 27 27 H 1.48500 * 109.47205 * 210.00384 * 25 23 21 28 28 H 1.48500 * 109.46828 * 330.00359 * 25 23 21 29 29 C 1.47962 * 90.76525 * 24.68837 * 16 15 14 30 30 H 1.09001 * 109.46924 * 300.00271 * 1 2 3 31 31 H 1.09000 * 109.47104 * 59.99686 * 1 2 3 32 32 H 1.08993 * 109.47832 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46511 * 239.99535 * 2 1 3 34 34 H 1.09001 * 109.46580 * 120.00304 * 2 1 3 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 37 37 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 38 38 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 39 39 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 40 40 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 41 41 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 42 42 H 1.09001 * 109.47289 * 180.02562 * 8 7 6 43 43 H 0.96999 * 120.00043 * 359.97438 * 13 11 9 44 44 H 1.08995 * 112.94273 * 23.42973 * 14 13 11 45 45 H 1.09001 * 113.75743 * 336.24085 * 15 14 13 46 46 H 1.09000 * 113.75246 * 107.60119 * 15 14 13 47 47 H 1.08999 * 109.47656 * 190.63784 * 17 16 15 48 48 H 1.09004 * 109.47176 * 310.64179 * 17 16 15 49 49 H 0.97002 * 119.99781 * 0.02562 * 20 18 17 50 50 H 0.97002 * 119.99954 * 179.97438 * 24 23 21 51 51 H 1.08999 * 113.75675 * 220.99480 * 29 16 15 52 52 H 1.09001 * 113.75521 * 89.62821 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1449 3.5692 1.3069 7 6 3.6697 3.5715 1.1809 8 6 4.0744 2.8874 -0.1264 9 6 3.5648 1.4442 -0.1258 10 1 3.8532 0.9568 -1.0572 11 6 4.1657 0.6989 1.0381 12 8 3.4453 0.2138 1.8845 13 7 5.5037 0.5715 1.1384 14 6 6.0878 -0.1534 2.2695 15 6 6.7956 0.7566 3.2897 16 7 7.8517 -0.2787 3.3317 17 6 9.1878 0.3319 3.3316 18 6 9.4320 1.0061 4.6571 19 8 8.5773 0.9801 5.5173 20 7 10.6002 1.6381 4.8866 21 6 10.8222 2.2519 6.0922 22 1 10.0612 2.2287 6.8582 23 6 12.0267 2.9029 6.3289 24 7 12.9529 2.9306 5.3971 25 14 12.3295 3.7387 7.9719 26 1 12.9526 2.7722 8.9114 27 1 13.2384 4.8969 7.7779 28 1 11.0381 4.2113 8.5322 29 6 7.4800 -0.7413 1.9763 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.0699 1.5875 2.1491 36 1 0.5490 2.1253 1.3968 37 1 1.7100 4.1079 0.4652 38 1 1.8569 4.0564 2.2385 39 1 4.0328 4.5992 1.1811 40 1 4.1046 3.0326 2.0227 41 1 3.6394 3.4262 -0.9682 42 1 5.1607 2.8886 -0.2160 43 1 6.0799 0.9592 0.4612 44 1 5.3968 -0.8659 2.7199 45 1 7.1288 1.7072 2.8732 46 1 6.2530 0.8690 4.2284 47 1 9.9403 -0.4405 3.1728 48 1 9.2500 1.0698 2.5318 49 1 11.2835 1.6591 4.1985 50 1 13.7936 3.3854 5.5622 51 1 7.4844 -1.8256 1.8658 52 1 8.0134 -0.2287 1.1758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494473471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:18 Heat of formation + Delta-G solvation = -82.952853 kcal Electronic energy + Delta-G solvation = -30143.852195 eV Core-core repulsion = 26142.322971 eV Total energy + Delta-G solvation = -4001.529224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96395 -41.03328 -39.57763 -38.10246 -35.99902 -35.39854 -34.45710 -33.32102 -32.24231 -30.80378 -29.85859 -27.37746 -27.09243 -25.55097 -24.66951 -23.98598 -22.10700 -21.61030 -21.24122 -21.03421 -20.24352 -19.90701 -17.92842 -17.71900 -17.42721 -16.78360 -16.61206 -16.54442 -16.13816 -15.85124 -15.62819 -15.50792 -15.12177 -14.91015 -14.57985 -14.55346 -14.16066 -14.09268 -13.72064 -13.59877 -13.53311 -13.43261 -13.17041 -13.00960 -12.87439 -12.83308 -12.49601 -12.43936 -12.31733 -12.21143 -12.15011 -11.89253 -11.80419 -11.69935 -11.52536 -11.42986 -10.88487 -10.83873 -10.39162 -10.30678 -10.03991 -9.99733 -9.71568 -8.48931 -5.97464 1.35704 1.39645 1.52089 1.70939 2.02689 2.14139 2.28518 2.86329 3.17450 3.22328 3.56622 3.61870 3.73940 3.79719 3.83305 4.07453 4.14357 4.21051 4.26787 4.28085 4.38025 4.38847 4.42794 4.48809 4.52784 4.56108 4.61579 4.65889 4.71770 4.80007 4.82468 4.85610 4.97276 5.00714 5.05114 5.10317 5.18837 5.27405 5.31646 5.33679 5.34190 5.36466 5.39148 5.50055 5.52163 5.57517 5.80255 5.85949 6.04368 6.58277 6.62681 7.10900 7.37911 7.53671 8.10320 8.68352 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002224 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.535632 B =12587.928972 C =13232.172000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.059 4.059 4 H 0.093 0.907 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.127 4.127 8 C -0.105 4.105 9 C -0.100 4.100 10 H 0.123 0.877 11 C 0.517 3.483 12 O -0.564 6.564 13 N -0.710 5.710 14 C 0.133 3.867 15 C 0.007 3.993 16 N -0.481 5.481 17 C 0.027 3.973 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.268 1.268 28 H -0.275 1.275 29 C 0.009 3.991 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.414 0.586 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.114 0.886 48 H 0.084 0.916 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.112 0.888 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -1.535 -21.526 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.078 4.078 4 H 0.111 0.889 5 C -0.166 4.166 6 C -0.155 4.155 7 C -0.165 4.165 8 C -0.142 4.142 9 C -0.121 4.121 10 H 0.141 0.859 11 C 0.305 3.695 12 O -0.443 6.443 13 N -0.362 5.362 14 C 0.026 3.974 15 C -0.124 4.124 16 N -0.205 5.205 17 C -0.105 4.105 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.200 1.200 29 C -0.119 4.119 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.252 0.748 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.132 0.868 48 H 0.102 0.898 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.130 0.870 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.194 -2.275 -19.815 26.997 hybrid contribution 1.105 1.155 0.351 1.637 sum -17.089 -1.120 -19.464 25.925 Atomic orbital electron populations 1.21761 0.95656 1.01368 1.01725 1.21771 0.96251 0.96656 1.02245 1.20938 0.92424 0.96244 0.98182 0.88915 1.21821 1.00383 0.95553 0.98827 1.21529 0.95407 0.96796 1.01721 1.21586 0.96415 1.00825 0.97645 1.21567 1.01625 0.92741 0.98298 1.21524 0.96677 0.96939 0.96916 0.85882 1.21236 0.81911 0.78873 0.87435 1.90599 1.60498 1.49556 1.43644 1.45976 1.07159 1.56508 1.26584 1.22648 0.94214 0.93753 0.86783 1.24196 0.93725 0.95127 0.99302 1.68332 1.00821 1.25077 1.26232 1.22353 0.94623 0.99492 0.94023 1.20837 0.82774 0.83046 0.90870 1.90511 1.46331 1.65036 1.48935 1.41921 1.15351 1.48158 1.15593 1.19610 1.01647 1.31586 0.93473 0.90720 1.26005 0.94663 0.97885 1.02599 1.69661 1.07243 1.44034 1.34939 0.84961 0.78111 0.78025 0.77441 1.19669 1.19251 1.20043 1.24483 0.92960 1.03599 0.90884 0.93426 0.91816 0.93139 0.91853 0.92058 0.92360 0.92152 0.90391 0.93328 0.91193 0.94950 0.88425 0.90264 0.74845 0.87912 0.91158 0.92799 0.86830 0.89837 0.76878 0.91235 0.86993 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 71.98 0.70 -1.54 16 2 C -0.13 -2.26 5.03 30.59 0.15 -2.10 16 3 C -0.06 -0.89 1.93 -10.80 -0.02 -0.91 16 4 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.13 -2.50 4.69 30.59 0.14 -2.36 16 6 C -0.12 -2.00 5.92 30.60 0.18 -1.82 16 7 C -0.13 -2.20 5.70 30.59 0.17 -2.02 16 8 C -0.10 -1.18 5.36 30.61 0.16 -1.02 16 9 C -0.10 -1.32 2.55 -11.52 -0.03 -1.35 16 10 H 0.12 0.99 8.14 -2.39 -0.02 0.98 16 11 C 0.52 10.65 5.36 87.66 0.47 11.12 16 12 O -0.56 -16.40 10.96 -3.03 -0.03 -16.44 16 13 N -0.71 -12.65 5.26 -446.10 -2.35 -15.00 16 14 C 0.13 3.18 4.43 46.56 0.21 3.39 16 15 C 0.01 0.22 6.56 86.41 0.57 0.79 16 16 N -0.48 -15.47 5.95 -912.81 -5.43 -20.89 16 17 C 0.03 0.90 5.31 85.56 0.45 1.35 16 18 C 0.44 21.11 7.59 87.66 0.67 21.77 16 19 O -0.62 -35.66 15.13 -3.07 -0.05 -35.71 16 20 N -0.57 -29.53 5.29 -306.98 -1.62 -31.15 16 21 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 22 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 24 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 25 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 29 C 0.01 0.19 7.73 86.41 0.67 0.86 16 30 H 0.05 0.79 6.56 -2.39 -0.02 0.78 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.47 5.64 -2.39 -0.01 1.46 16 35 H 0.06 1.58 5.51 -2.39 -0.01 1.56 16 36 H 0.06 1.12 6.56 -2.39 -0.02 1.10 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.03 0.76 7.22 -2.39 -0.02 0.74 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.71 7.57 -2.39 -0.02 0.69 16 43 H 0.41 4.65 8.15 -92.71 -0.76 3.90 16 44 H 0.10 2.95 7.46 -2.39 -0.02 2.93 16 45 H 0.07 2.18 7.78 -2.39 -0.02 2.16 16 46 H 0.05 2.18 8.09 -2.39 -0.02 2.16 16 47 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 48 H 0.08 2.30 7.69 -2.39 -0.02 2.29 16 49 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 50 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 51 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 52 H 0.10 1.47 7.77 -2.39 -0.02 1.46 16 Total: -1.00 -75.08 398.45 -1.95 -77.03 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.56 Total: 38.16 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.77 Total: 7.63 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -9.11 Total: -116.04 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.08 Total: -52.15 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -75.08 -1.95 -77.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494473471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.922 kcal (2) G-P(sol) polarization free energy of solvation -75.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds