Wall clock time and date at job start Tue Mar 31 2020 19:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46626 * 2 1 4 4 H 1.08996 * 109.47069 * 55.00744 * 3 2 1 5 5 C 1.52998 * 109.47431 * 295.00171 * 3 2 1 6 6 C 1.52996 * 109.47238 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47334 * 59.99958 * 6 5 3 8 8 C 1.52998 * 109.46992 * 300.00192 * 7 6 5 9 9 C 1.52996 * 109.47216 * 60.00145 * 8 7 6 10 10 H 1.09009 * 109.47102 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47442 * 59.99784 * 9 8 7 12 12 O 1.21283 * 119.99803 * 239.99993 * 11 9 8 13 13 N 1.34777 * 119.99675 * 60.27868 * 11 9 8 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 9 15 15 C 1.53936 * 113.73550 * 251.72244 * 14 13 11 16 16 N 1.47954 * 86.18397 * 221.92521 * 15 14 13 17 17 C 1.46892 * 111.00376 * 137.58163 * 16 15 14 18 18 C 1.50706 * 109.47031 * 70.63773 * 17 16 15 19 19 O 1.21284 * 119.99821 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99789 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99965 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99846 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00556 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99469 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00500 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46842 * 89.99970 * 25 23 21 27 27 H 1.48500 * 109.47099 * 210.00293 * 25 23 21 28 28 H 1.48499 * 109.46828 * 330.00652 * 25 23 21 29 29 C 1.47963 * 90.76341 * 24.68945 * 16 15 14 30 30 H 1.09006 * 109.46989 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46892 * 299.99360 * 1 2 3 32 32 H 1.08997 * 109.47427 * 59.99508 * 1 2 3 33 33 H 1.09000 * 109.46592 * 240.00673 * 2 1 3 34 34 H 1.08988 * 109.47164 * 119.99930 * 2 1 3 35 35 H 1.09004 * 109.46783 * 60.00030 * 5 3 2 36 36 H 1.09005 * 109.46870 * 300.00371 * 5 3 2 37 37 H 1.09005 * 109.47173 * 299.99794 * 6 5 3 38 38 H 1.09000 * 109.46855 * 180.02562 * 6 5 3 39 39 H 1.08998 * 109.47408 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.47125 * 59.99806 * 7 6 5 41 41 H 1.08996 * 109.47009 * 299.99525 * 8 7 6 42 42 H 1.09004 * 109.47239 * 179.97438 * 8 7 6 43 43 H 0.97000 * 119.99894 * 359.71837 * 13 11 9 44 44 H 1.08996 * 112.94498 * 23.43260 * 14 13 11 45 45 H 1.09004 * 113.75743 * 336.24126 * 15 14 13 46 46 H 1.09003 * 113.76025 * 107.60394 * 15 14 13 47 47 H 1.08998 * 109.47501 * 190.64077 * 17 16 15 48 48 H 1.09007 * 109.47181 * 310.64102 * 17 16 15 49 49 H 0.97002 * 120.00066 * 0.02562 * 20 18 17 50 50 H 0.97002 * 120.00025 * 179.97438 * 24 23 21 51 51 H 1.09000 * 113.75784 * 220.99421 * 29 16 15 52 52 H 1.08995 * 113.85864 * 89.64253 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 2.1455 3.5690 -1.3075 7 6 3.6704 3.5704 -1.1821 8 6 4.0752 2.8863 0.1252 9 6 3.5648 1.4440 0.1253 10 1 3.8529 0.9567 1.0570 11 6 4.1652 0.6984 -1.0386 12 8 3.4444 0.2137 -1.8850 13 7 5.5029 0.5656 -1.1359 14 6 6.0863 -0.1643 -2.2642 15 6 6.6761 -1.5329 -1.8784 16 7 7.8034 -1.1883 -2.7725 17 6 9.0888 -1.5602 -2.1665 18 6 9.2204 -3.0614 -2.1494 19 8 8.3311 -3.7532 -2.5984 20 7 10.3267 -3.6351 -1.6362 21 6 10.4462 -5.0008 -1.6201 22 1 9.6540 -5.6169 -2.0192 23 6 11.5865 -5.5923 -1.0905 24 7 12.5502 -4.8426 -0.6045 25 14 11.7490 -7.4531 -1.0680 26 1 12.3976 -7.9085 -2.3239 27 1 12.5773 -7.8636 0.0941 28 1 10.4011 -8.0663 -0.9566 29 6 7.5305 0.2549 -2.5930 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.5488 2.1253 -1.3968 36 1 2.0697 1.5876 -2.1491 37 1 1.7112 4.1082 -0.4656 38 1 1.8567 4.0564 -2.2387 39 1 4.0340 4.5979 -1.1818 40 1 4.1047 3.0311 -2.0240 41 1 3.6409 3.4256 0.9670 42 1 5.1616 2.8869 0.2143 43 1 6.0793 0.9533 -0.4589 44 1 5.4302 -0.1970 -3.1340 45 1 6.9565 -1.6098 -0.8279 46 1 6.0838 -2.3798 -2.2249 47 1 9.9033 -1.1307 -2.7497 48 1 9.1328 -1.1800 -1.1458 49 1 11.0381 -3.0817 -1.2774 50 1 13.3462 -5.2556 -0.2345 51 1 7.6209 0.8363 -3.5106 52 1 8.0601 0.7025 -1.7521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494473473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:25 Heat of formation + Delta-G solvation = -59.027587 kcal Electronic energy + Delta-G solvation = -29968.027443 eV Core-core repulsion = 25967.535697 eV Total energy + Delta-G solvation = -4000.491746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09823 -39.88169 -37.88510 -37.18542 -34.62958 -33.95244 -33.60196 -31.52985 -31.22930 -29.54822 -29.20593 -26.01871 -25.64329 -24.30264 -23.95116 -22.97293 -21.34999 -20.84244 -20.29939 -19.44576 -19.19781 -17.91311 -16.85037 -16.44978 -16.23239 -15.98271 -15.45357 -15.19913 -14.86620 -14.65918 -14.37022 -14.21558 -13.91955 -13.82428 -13.72538 -13.46306 -13.30529 -12.98053 -12.75968 -12.57436 -12.41492 -12.17079 -12.07333 -11.77365 -11.69296 -11.62898 -11.53060 -11.30164 -11.24499 -11.07855 -10.97502 -10.70419 -10.59312 -10.40193 -10.24613 -10.22897 -10.20356 -9.52137 -9.47585 -9.05884 -8.70806 -8.26134 -7.97779 -6.43161 -3.83886 2.52717 3.00191 3.17099 3.25745 3.31829 3.87437 4.00996 4.19363 4.26996 4.38506 4.40258 4.51999 4.75672 4.86023 4.88206 4.91727 4.97709 5.02422 5.10780 5.17384 5.19609 5.25829 5.27884 5.30349 5.43829 5.44373 5.47268 5.57991 5.63021 5.65510 5.66272 5.69721 5.77491 5.84375 5.88826 5.93204 5.95386 6.00147 6.04587 6.18021 6.19871 6.26352 6.32362 6.36905 6.55140 6.59876 7.13057 7.38744 7.54059 8.04260 8.16085 8.59836 9.16716 9.52340 10.04178 10.74628 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002100 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.149478 B =13328.362814 C =14009.240471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C -0.061 4.061 4 H 0.070 0.930 5 C -0.130 4.130 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.109 4.109 9 C -0.107 4.107 10 H 0.095 0.905 11 C 0.523 3.477 12 O -0.527 6.527 13 N -0.722 5.722 14 C 0.116 3.884 15 C 0.010 3.990 16 N -0.449 5.449 17 C 0.013 3.987 18 C 0.443 3.557 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C -0.009 4.009 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.398 0.602 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.053 0.947 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.095 0.905 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.782 20.353 4.371 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.080 4.080 4 H 0.088 0.912 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.160 4.160 8 C -0.147 4.147 9 C -0.129 4.129 10 H 0.113 0.887 11 C 0.310 3.690 12 O -0.403 6.403 13 N -0.373 5.373 14 C 0.010 3.990 15 C -0.119 4.119 16 N -0.172 5.172 17 C -0.119 4.119 18 C 0.228 3.772 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.139 4.139 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.232 0.768 44 H 0.141 0.859 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.113 0.887 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.666 19.171 2.880 26.228 hybrid contribution 1.276 -0.091 1.620 2.064 sum -16.391 19.081 4.500 25.553 Atomic orbital electron populations 1.21778 0.96248 1.01311 1.01301 1.21842 0.95673 0.96210 1.03489 1.20916 0.91824 0.96835 0.98404 0.91187 1.21898 1.00600 0.95073 0.99148 1.21538 0.95280 0.97447 1.01369 1.21566 0.96578 1.00406 0.97453 1.21528 1.00592 0.93708 0.98894 1.21467 0.97376 0.96487 0.97523 0.88696 1.20581 0.82020 0.79286 0.87100 1.90583 1.59513 1.48189 1.42048 1.46141 1.07107 1.56788 1.27250 1.23098 0.93684 0.91724 0.90472 1.24293 0.93223 0.98128 0.96299 1.68377 1.01564 1.04827 1.42387 1.22450 0.94136 0.96998 0.98321 1.19671 0.84543 0.88426 0.84560 1.90533 1.41004 1.63878 1.50655 1.41866 1.16973 1.07705 1.53614 1.19699 1.03875 0.81731 1.37467 0.87935 1.25261 0.95307 1.00558 0.96846 1.69613 1.08036 1.36027 1.40729 0.85856 0.78467 0.82236 0.77735 1.20357 1.20929 1.19418 1.24428 0.94569 0.93129 1.01802 0.93051 0.93434 0.92591 0.88897 0.92893 0.92206 0.88880 0.92427 0.92239 0.91889 0.91863 0.90823 0.91580 0.76780 0.85870 0.91421 0.88327 0.89020 0.92875 0.77524 0.91884 0.88706 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.13 -1.32 5.03 -26.73 -0.13 -1.45 16 3 C -0.06 -0.51 1.93 -90.62 -0.18 -0.69 16 4 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.13 -1.17 4.69 -26.73 -0.13 -1.29 16 6 C -0.12 -0.89 5.92 -26.74 -0.16 -1.05 16 7 C -0.12 -0.88 5.70 -26.73 -0.15 -1.03 16 8 C -0.11 -0.68 5.36 -26.73 -0.14 -0.83 16 9 C -0.11 -0.85 2.54 -91.77 -0.23 -1.08 16 10 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 11 C 0.52 5.55 5.36 -10.98 -0.06 5.49 16 12 O -0.53 -7.29 10.96 5.55 0.06 -7.22 16 13 N -0.72 -6.96 5.26 -54.94 -0.29 -7.25 16 14 C 0.12 1.41 4.43 -69.62 -0.31 1.10 16 15 C 0.01 0.16 6.56 -2.77 -0.02 0.15 16 16 N -0.45 -7.36 5.95 -239.88 -1.43 -8.78 16 17 C 0.01 0.23 5.31 -4.98 -0.03 0.20 16 18 C 0.44 10.50 7.59 -10.98 -0.08 10.42 16 19 O -0.58 -15.83 15.13 5.55 0.08 -15.74 16 20 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 25 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 C -0.01 -0.11 7.73 -2.76 -0.02 -0.13 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 33 H 0.09 1.16 5.64 -51.93 -0.29 0.87 16 34 H 0.05 0.50 8.14 -51.94 -0.42 0.08 16 35 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 36 H 0.09 1.08 5.51 -51.93 -0.29 0.79 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.56 7.22 -51.93 -0.37 0.19 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.34 7.57 -51.93 -0.39 -0.05 16 43 H 0.40 2.87 8.16 -40.82 -0.33 2.54 16 44 H 0.12 1.70 7.46 -51.93 -0.39 1.31 16 45 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 46 H 0.10 1.82 8.09 -51.93 -0.42 1.40 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 48 H 0.05 0.81 7.69 -51.92 -0.40 0.41 16 49 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -32.38 398.45 -10.30 -42.68 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.86 Total: 11.50 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.52 Total: 0.88 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -1.05 Total: -54.21 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.14 Total: -22.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.38 -10.30 -42.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494473473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.349 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds