Wall clock time and date at job start Tue Mar 31 2020 19:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 H 1.09001 * 109.47372 * 55.00205 * 3 2 1 5 5 C 1.52997 * 109.46975 * 294.99833 * 3 2 1 6 6 C 1.53006 * 109.47164 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 3 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 9 8 7 12 12 O 1.21289 * 119.99822 * 119.99794 * 11 9 8 13 13 N 1.34777 * 120.00115 * 299.99704 * 11 9 8 14 14 C 1.46492 * 120.00147 * 180.02562 * 13 11 9 15 15 C 1.53939 * 113.73407 * 251.72583 * 14 13 11 16 16 N 1.47954 * 86.18372 * 221.91916 * 15 14 13 17 17 C 1.46898 * 111.00236 * 137.57949 * 16 15 14 18 18 C 1.50708 * 109.46857 * 70.64113 * 17 16 15 19 19 O 1.21291 * 119.99798 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99788 * 180.02562 * 18 17 16 21 21 C 1.37104 * 119.99949 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99635 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99891 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00527 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99679 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47639 * 89.99787 * 25 23 21 27 27 H 1.48509 * 109.46808 * 209.99839 * 25 23 21 28 28 H 1.48497 * 109.46936 * 329.99142 * 25 23 21 29 29 C 1.47959 * 90.76396 * 24.68902 * 16 15 14 30 30 H 1.09007 * 109.47221 * 300.00499 * 1 2 3 31 31 H 1.08997 * 109.47219 * 59.99756 * 1 2 3 32 32 H 1.09002 * 109.47423 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46646 * 239.99644 * 2 1 3 34 34 H 1.09001 * 109.46843 * 119.99930 * 2 1 3 35 35 H 1.09001 * 109.47375 * 300.00370 * 5 3 2 36 36 H 1.09000 * 109.47140 * 60.00388 * 5 3 2 37 37 H 1.08998 * 109.46505 * 299.99708 * 6 5 3 38 38 H 1.08996 * 109.46884 * 180.02562 * 6 5 3 39 39 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 41 41 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 42 42 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 43 43 H 0.97003 * 119.99640 * 0.02562 * 13 11 9 44 44 H 1.09001 * 112.94250 * 23.43279 * 14 13 11 45 45 H 1.09001 * 113.75693 * 336.24221 * 15 14 13 46 46 H 1.09001 * 113.75772 * 107.60096 * 15 14 13 47 47 H 1.08996 * 109.47628 * 190.64467 * 17 16 15 48 48 H 1.09004 * 109.47507 * 310.64524 * 17 16 15 49 49 H 0.96997 * 120.00590 * 0.02562 * 20 18 17 50 50 H 0.96993 * 120.00593 * 180.02562 * 24 23 21 51 51 H 1.09000 * 113.76422 * 220.98934 * 29 16 15 52 52 H 1.08999 * 113.85869 * 89.63839 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1264 -1.3074 6 6 2.1459 3.5688 -1.3077 7 6 3.6707 3.5701 -1.1822 8 6 4.0754 2.8860 0.1252 9 6 3.5649 1.4437 0.1254 10 1 3.9991 0.9044 -0.7164 11 6 3.9630 0.7702 1.4134 12 8 3.1110 0.3322 2.1573 13 7 5.2658 0.6545 1.7387 14 6 5.6528 -0.0008 2.9905 15 6 6.1889 0.9701 4.0580 16 7 7.2182 -0.0565 4.3328 17 6 8.5396 0.5587 4.5159 18 6 8.5672 1.3102 5.8220 19 8 7.5830 1.3308 6.5307 20 7 9.6853 1.9592 6.2025 21 6 9.7106 2.6425 7.3909 22 1 8.8345 2.6601 8.0223 23 6 10.8632 3.3121 7.7828 24 7 11.9293 3.2902 7.0148 25 14 10.8978 4.2424 9.4024 26 1 11.3553 3.3348 10.4850 27 1 11.8314 5.3922 9.2929 28 1 9.5345 4.7400 9.7166 29 6 7.0710 -0.5989 2.9641 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 1.7115 4.1080 -0.4659 38 1 1.8571 4.0562 -2.2389 39 1 4.0344 4.5976 -1.1820 40 1 4.1049 3.0308 -2.0240 41 1 5.1617 2.8873 0.2147 42 1 3.6411 3.4253 0.9670 43 1 5.9472 1.0051 1.1439 44 1 4.8935 -0.6887 3.3624 45 1 6.5909 1.8962 3.6471 46 1 5.5006 1.1348 4.8871 47 1 9.3038 -0.2185 4.5277 48 1 8.7360 1.2489 3.6955 49 1 10.4722 1.9431 5.6356 50 1 12.7340 3.7573 7.2886 51 1 7.0877 -1.6878 2.9190 52 1 7.7305 -0.1330 2.2320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494473474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:26 Heat of formation + Delta-G solvation = -88.551313 kcal Electronic energy + Delta-G solvation = -29613.349451 eV Core-core repulsion = 25611.577460 eV Total energy + Delta-G solvation = -4001.771991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82977 -40.92009 -39.59027 -38.54352 -36.00167 -35.38168 -34.45565 -33.32171 -32.28056 -30.82636 -29.89387 -27.37818 -27.10102 -25.58280 -24.64435 -24.07595 -21.63049 -21.58806 -21.24318 -20.95301 -20.55102 -19.91218 -18.14686 -17.92040 -17.64831 -16.64827 -16.58792 -16.34167 -16.01838 -15.84171 -15.68997 -15.58253 -15.20145 -14.94697 -14.88320 -14.43041 -14.13265 -13.98530 -13.81763 -13.64035 -13.53582 -13.44639 -13.29918 -13.13507 -12.86789 -12.51296 -12.46202 -12.39405 -12.37805 -12.14922 -12.07294 -11.94564 -11.80210 -11.60539 -11.52301 -11.46245 -11.29666 -10.86539 -10.45028 -10.36076 -10.05221 -10.02283 -9.73800 -8.48842 -5.97411 1.35845 1.39824 1.52246 1.62297 2.02722 2.09683 2.28235 2.85177 3.17470 3.21704 3.54632 3.58687 3.69508 3.77633 3.80649 4.09068 4.14024 4.22303 4.26526 4.30629 4.38092 4.38633 4.42501 4.46799 4.49106 4.52758 4.53592 4.61726 4.69879 4.79329 4.81868 4.84927 4.95648 5.00179 5.04261 5.15275 5.21140 5.23309 5.28712 5.33065 5.36169 5.36866 5.39219 5.44607 5.47914 5.62036 5.66406 5.85383 6.04214 6.56489 6.58418 7.10972 7.29302 7.53789 8.10407 8.68452 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018030 B = 0.002053 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.600669 B =13633.177395 C =14256.629434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.063 4.063 4 H 0.048 0.952 5 C -0.109 4.109 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.111 4.111 9 C -0.093 4.093 10 H 0.122 0.878 11 C 0.513 3.487 12 O -0.573 6.573 13 N -0.707 5.707 14 C 0.130 3.870 15 C 0.005 3.995 16 N -0.481 5.481 17 C 0.027 3.973 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.268 1.268 28 H -0.275 1.275 29 C 0.010 3.990 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.416 0.584 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.113 0.887 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -2.962 -25.540 28.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C -0.082 4.082 4 H 0.067 0.933 5 C -0.147 4.147 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.114 4.114 10 H 0.140 0.860 11 C 0.301 3.699 12 O -0.452 6.452 13 N -0.359 5.359 14 C 0.023 3.977 15 C -0.125 4.125 16 N -0.204 5.204 17 C -0.105 4.105 18 C 0.225 3.775 19 O -0.508 6.508 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.093 0.907 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.200 1.200 29 C -0.119 4.119 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.253 0.747 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.132 0.868 48 H 0.102 0.898 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.131 0.869 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.404 -3.600 -23.949 28.178 hybrid contribution 0.984 1.209 0.465 1.627 sum -13.420 -2.391 -23.484 27.154 Atomic orbital electron populations 1.21749 0.95735 1.01437 1.01509 1.21774 0.96378 0.96456 1.02267 1.20913 0.92533 0.96426 0.98373 0.93329 1.21621 1.01202 0.95568 0.96270 1.21586 0.95934 0.96612 1.01978 1.21513 0.95860 1.00969 0.96717 1.21552 1.01396 0.92809 0.99100 1.21425 0.97962 0.97497 0.94547 0.86013 1.21350 0.82075 0.78104 0.88347 1.90656 1.50780 1.50052 1.53730 1.45960 1.07909 1.59692 1.22380 1.22695 0.96820 0.94264 0.83879 1.24217 0.95130 0.95284 0.97856 1.68338 1.03276 1.22596 1.26233 1.22359 0.94628 0.99040 0.94477 1.20837 0.83473 0.83392 0.89837 1.90511 1.36277 1.66391 1.57653 1.41921 1.13200 1.45773 1.20129 1.19615 0.99664 1.28760 0.98292 0.90709 1.26004 0.94241 0.98309 1.02593 1.69653 1.03296 1.43892 1.39036 0.84960 0.78113 0.77941 0.77511 1.19669 1.19263 1.20043 1.24480 0.94238 1.03252 0.89882 0.94236 0.91430 0.92904 0.91494 0.92081 0.90521 0.91316 0.93190 0.90672 0.91200 0.90111 0.90062 0.93375 0.74652 0.87894 0.90985 0.92654 0.86784 0.89764 0.76866 0.91229 0.86928 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.73 16 2 C -0.13 -2.37 5.14 30.59 0.16 -2.21 16 3 C -0.06 -1.04 1.36 -10.80 -0.01 -1.06 16 4 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 5 C -0.11 -1.23 4.96 30.60 0.15 -1.08 16 6 C -0.12 -1.31 5.92 30.60 0.18 -1.12 16 7 C -0.11 -1.07 5.92 30.59 0.18 -0.88 16 8 C -0.11 -1.40 5.10 30.59 0.16 -1.25 16 9 C -0.09 -1.35 2.06 -11.54 -0.02 -1.38 16 10 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 11 C 0.51 11.14 6.83 87.66 0.60 11.74 16 12 O -0.57 -17.73 13.27 -3.06 -0.04 -17.77 16 13 N -0.71 -12.89 5.26 -446.11 -2.34 -15.24 16 14 C 0.13 3.15 4.43 46.56 0.21 3.36 16 15 C 0.01 0.18 6.56 86.41 0.57 0.74 16 16 N -0.48 -15.44 5.95 -912.84 -5.43 -20.87 16 17 C 0.03 0.89 5.31 85.56 0.45 1.34 16 18 C 0.44 21.06 7.59 87.66 0.67 21.73 16 19 O -0.62 -35.64 15.13 -3.06 -0.05 -35.68 16 20 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 21 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 22 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 25 Si 0.99 43.31 29.55 68.60 2.03 45.33 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 C 0.01 0.21 7.73 86.41 0.67 0.87 16 30 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.87 6.56 -2.39 -0.02 0.86 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.51 5.41 -2.39 -0.01 1.49 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.76 6.56 -2.39 -0.02 0.75 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 41 H 0.08 0.80 7.57 -2.39 -0.02 0.79 16 42 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.42 4.71 8.15 -92.71 -0.76 3.95 16 44 H 0.10 2.98 7.46 -2.39 -0.02 2.97 16 45 H 0.07 2.22 7.78 -2.39 -0.02 2.20 16 46 H 0.05 2.24 8.09 -2.39 -0.02 2.22 16 47 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.08 2.31 7.69 -2.38 -0.02 2.29 16 49 H 0.40 19.14 7.90 -92.71 -0.73 18.40 16 50 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 51 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 52 H 0.11 1.47 7.77 -2.39 -0.02 1.45 16 Total: -1.00 -75.57 404.78 -1.81 -77.38 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.57 Total: 36.34 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 5.92 Total: 10.57 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -9.11 Total: -116.17 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.09 Total: -53.45 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -75.57 -1.81 -77.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494473474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.167 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds