Wall clock time and date at job start Tue Mar 31 2020 20:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.51264 * 120.85087 * 2 1 4 4 C 1.53234 * 108.53458 * 231.31798 * 3 2 1 5 5 C 1.52955 * 109.40750 * 305.37372 * 4 3 2 6 6 C 1.50702 * 109.41294 * 183.70574 * 5 4 3 7 7 O 1.21280 * 119.99971 * 359.85104 * 6 5 4 8 8 N 1.34775 * 119.99570 * 179.86137 * 6 5 4 9 9 C 1.46505 * 119.99727 * 180.27317 * 8 6 5 10 10 C 1.52991 * 109.47260 * 179.72295 * 9 8 6 11 11 H 1.09003 * 109.47414 * 65.00196 * 10 9 8 12 12 C 1.52999 * 109.47403 * 185.00145 * 10 9 8 13 13 C 1.53000 * 109.47410 * 183.22276 * 12 10 9 14 14 N 1.46905 * 109.47212 * 304.99760 * 10 9 8 15 15 C 1.46895 * 110.99725 * 298.68789 * 14 10 9 16 16 C 1.50701 * 109.46801 * 174.48636 * 15 14 10 17 17 O 1.21297 * 120.00051 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00120 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00417 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99711 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00364 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99918 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99707 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46911 * 90.00810 * 23 21 19 25 25 H 1.48501 * 109.46967 * 210.00234 * 23 21 19 26 26 H 1.48498 * 109.47452 * 330.00300 * 23 21 19 27 27 C 1.52959 * 109.75974 * 63.63370 * 5 4 3 28 28 C 1.51271 * 120.84765 * 179.97438 * 2 1 3 29 29 H 1.08001 * 119.99648 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00119 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.62938 * 111.60890 * 3 2 1 32 32 H 1.08992 * 109.63108 * 351.03566 * 3 2 1 33 33 H 1.09006 * 109.47846 * 185.39116 * 4 3 2 34 34 H 1.09003 * 109.48076 * 65.35629 * 4 3 2 35 35 H 1.09004 * 109.41128 * 303.55983 * 5 4 3 36 36 H 0.96998 * 120.00397 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46934 * 299.72542 * 9 8 6 38 38 H 1.08999 * 109.47082 * 59.72074 * 9 8 6 39 39 H 1.09006 * 109.46799 * 303.21591 * 12 10 9 40 40 H 1.09001 * 109.47679 * 63.21571 * 12 10 9 41 41 H 1.09006 * 109.46720 * 293.94705 * 13 12 10 42 42 H 1.08996 * 109.47430 * 53.94355 * 13 12 10 43 43 H 1.09006 * 109.47141 * 173.95239 * 13 12 10 44 44 H 1.00904 * 110.99870 * 174.73010 * 14 10 9 45 45 H 1.08991 * 109.47249 * 294.48588 * 15 14 10 46 46 H 1.08998 * 109.47296 * 54.48860 * 15 14 10 47 47 H 0.97007 * 120.00320 * 359.97438 * 18 16 15 48 48 H 0.97004 * 119.99954 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.48128 * 56.34417 * 27 5 4 50 50 H 1.09004 * 109.48151 * 176.38934 * 27 5 4 51 51 H 1.09006 * 109.62730 * 248.39311 * 28 2 1 52 52 H 1.08997 * 109.62854 * 8.77067 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1150 1.2511 -1.1341 5 6 3.9812 -0.0004 -0.9824 6 6 5.0513 -0.0006 -2.0434 7 8 5.1125 0.9090 -2.8432 8 7 5.9402 -1.0119 -2.1037 9 6 6.9842 -1.0092 -3.1315 10 6 7.8570 -2.2560 -2.9752 11 1 7.2590 -3.1454 -3.1741 12 6 9.0205 -2.1917 -3.9667 13 6 9.8475 -3.4750 -3.8665 14 7 8.3839 -2.3163 -1.6052 15 6 9.2223 -1.1464 -1.3117 16 6 9.6327 -1.1736 0.1381 17 8 9.2635 -2.0789 0.8560 18 7 10.4100 -0.1921 0.6369 19 6 10.7838 -0.2171 1.9557 20 1 10.4551 -1.0231 2.5950 21 6 11.5847 0.7952 2.4702 22 7 11.9426 0.7714 3.7344 23 14 12.1527 2.1897 1.3646 24 1 11.1595 3.2928 1.4094 25 1 13.4693 2.6897 1.8355 26 1 12.2809 1.6952 -0.0297 27 6 3.1138 -1.2511 -1.1346 28 6 2.0856 -1.2987 0.0006 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.5981 1.4191 0.9546 32 1 1.4029 2.1330 -0.1600 33 1 3.7468 2.1383 -1.0889 34 1 2.5980 1.2213 -2.0933 35 1 4.4478 -0.0007 0.0028 36 1 5.8914 -1.7393 -1.4639 37 1 6.5222 -1.0104 -4.1187 38 1 7.6012 -0.1175 -3.0203 39 1 8.6298 -2.0893 -4.9791 40 1 9.6509 -1.3339 -3.7321 41 1 10.3258 -3.5235 -2.8883 42 1 9.1951 -4.3386 -3.9952 43 1 10.6108 -3.4770 -4.6447 44 1 8.8929 -3.1739 -1.4511 45 1 10.1115 -1.1694 -1.9415 46 1 8.6583 -0.2356 -1.5126 47 1 10.7056 0.5317 0.0627 48 1 12.5021 1.4779 4.0935 49 1 2.5969 -1.2204 -2.0937 50 1 3.7449 -2.1387 -1.0897 51 1 2.5980 -1.4188 0.9552 52 1 1.4023 -2.1334 -0.1556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495050290.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:00 Heat of formation + Delta-G solvation = -75.349991 kcal Electronic energy + Delta-G solvation = -29980.619406 eV Core-core repulsion = 25979.419867 eV Total energy + Delta-G solvation = -4001.199539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.27606 -38.97619 -37.99157 -37.29444 -34.20141 -33.93874 -32.98251 -31.92082 -31.59910 -31.23917 -28.97222 -27.14386 -26.37264 -24.14768 -23.55261 -23.11474 -21.80462 -20.47617 -19.82545 -19.29755 -18.60459 -18.41404 -17.13955 -16.81255 -16.00968 -15.68568 -15.26687 -15.06812 -15.04909 -14.70151 -14.53148 -14.31370 -14.05999 -13.96540 -13.67785 -13.63833 -13.22511 -13.12353 -12.91187 -12.56682 -12.52722 -12.42633 -12.25540 -11.91733 -11.84685 -11.83382 -11.53576 -11.44486 -11.23768 -11.19579 -10.98632 -10.89194 -10.75522 -10.60027 -10.36686 -9.99029 -9.70345 -9.58024 -9.20996 -8.97764 -8.65075 -8.22010 -8.17723 -6.32487 -3.83809 2.05265 2.71003 3.01768 3.06921 3.14755 3.21681 3.72705 4.06668 4.10537 4.37080 4.51155 4.54020 4.63281 4.77857 4.82998 4.85553 4.92031 4.95905 5.07696 5.17371 5.20372 5.22056 5.22758 5.33937 5.38308 5.46975 5.49983 5.54407 5.62082 5.65059 5.67079 5.69915 5.72371 5.78160 5.80610 5.88061 5.91094 5.93307 6.00115 6.01689 6.09970 6.15165 6.45127 6.49646 6.67952 6.99777 7.45940 7.56755 7.62865 8.13009 8.30940 8.58402 8.93709 9.41364 9.81533 10.80600 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008587 B = 0.003199 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.022507 B = 8751.651220 C =10686.605134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.089 4.089 4 C -0.094 4.094 5 C -0.108 4.108 6 C 0.517 3.483 7 O -0.551 6.551 8 N -0.713 5.713 9 C 0.126 3.874 10 C 0.074 3.926 11 H 0.091 0.909 12 C -0.160 4.160 13 C -0.154 4.154 14 N -0.658 5.658 15 C 0.041 3.959 16 C 0.451 3.549 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.878 3.122 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C -0.104 4.104 28 C -0.086 4.086 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.411 0.589 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.354 0.646 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 -3.764 -15.084 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.132 4.132 5 C -0.129 4.129 6 C 0.303 3.697 7 O -0.429 6.429 8 N -0.365 5.365 9 C 0.001 3.999 10 C -0.037 4.037 11 H 0.109 0.891 12 C -0.200 4.200 13 C -0.211 4.211 14 N -0.291 5.291 15 C -0.092 4.092 16 C 0.237 3.763 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.142 4.142 28 C -0.123 4.123 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.247 0.753 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.174 0.826 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.097 0.903 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.630 -3.375 -14.690 22.444 hybrid contribution 1.495 0.722 -0.927 1.901 sum -15.135 -2.653 -15.618 21.909 Atomic orbital electron populations 1.23598 0.94982 1.01697 1.03637 1.22017 0.95086 0.95959 0.98566 1.20871 0.97591 0.94720 0.99400 1.21328 0.96451 0.96749 0.98623 1.21335 0.94930 0.97522 0.99163 1.20627 0.82244 0.81517 0.85320 1.90673 1.74079 1.35975 1.42144 1.45854 1.30431 1.25742 1.34492 1.21382 0.89143 0.97961 0.91388 1.21939 0.95147 0.98313 0.88331 0.89118 1.22211 0.98219 0.99241 1.00320 1.21765 0.99967 0.97207 1.02183 1.60177 1.41915 1.05221 1.21761 1.21796 0.96228 0.95411 0.95770 1.19692 0.83267 0.84587 0.88755 1.90558 1.57482 1.36361 1.60243 1.42221 1.46496 1.23060 1.11271 1.19416 1.28825 1.10833 0.84244 0.86287 1.25029 0.97235 0.97881 0.95952 1.69619 1.36120 1.33935 1.12445 0.86696 0.79503 0.82971 0.80369 1.19556 1.20166 1.19565 1.21514 0.97050 0.96405 0.99256 1.20829 0.97466 0.94822 0.99229 0.88585 0.88590 0.90556 0.91049 0.90803 0.91322 0.88040 0.75259 0.91387 0.91588 0.91294 0.91184 0.92423 0.92421 0.92477 0.82554 0.93365 0.89424 0.79773 0.91611 0.91395 0.90960 0.90301 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 13.99 29.01 0.41 -1.25 16 2 C -0.12 -1.04 5.35 -100.51 -0.54 -1.58 16 3 C -0.09 -0.82 6.03 -27.49 -0.17 -0.98 16 4 C -0.09 -1.01 4.53 -26.63 -0.12 -1.13 16 5 C -0.11 -1.17 2.42 -91.81 -0.22 -1.39 16 6 C 0.52 6.83 7.15 -10.99 -0.08 6.76 16 7 O -0.55 -9.13 15.94 5.56 0.09 -9.04 16 8 N -0.71 -8.39 5.26 -60.30 -0.32 -8.70 16 9 C 0.13 1.41 4.71 -4.04 -0.02 1.39 16 10 C 0.07 0.73 2.72 -67.71 -0.18 0.55 16 11 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.16 -1.44 5.12 -26.73 -0.14 -1.57 16 13 C -0.15 -1.34 9.49 37.16 0.35 -0.99 16 14 N -0.66 -8.71 5.33 -108.00 -0.58 -9.29 16 15 C 0.04 0.63 5.33 -4.98 -0.03 0.61 16 16 C 0.45 9.90 7.83 -10.99 -0.09 9.81 16 17 O -0.56 -14.53 15.90 5.54 0.09 -14.44 16 18 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 19 C -0.30 -8.54 10.16 -14.93 -0.15 -8.70 16 20 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 23 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 27 C -0.10 -0.92 5.14 -26.63 -0.14 -1.06 16 28 C -0.09 -0.72 6.03 -27.48 -0.17 -0.88 16 29 H 0.10 0.72 7.92 -52.49 -0.42 0.30 16 30 H 0.10 0.70 7.92 -52.49 -0.42 0.28 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 33 H 0.07 0.88 8.00 -51.93 -0.42 0.46 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.41 4.58 7.50 -40.82 -0.31 4.27 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.69 6.33 -51.93 -0.33 0.36 16 41 H 0.06 0.58 7.17 -51.93 -0.37 0.21 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.35 4.84 7.34 -39.29 -0.29 4.55 16 45 H 0.05 0.68 6.52 -51.93 -0.34 0.34 16 46 H 0.09 1.34 6.17 -51.93 -0.32 1.02 16 47 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.58 7.45 -51.93 -0.39 0.19 16 51 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 LS Contribution 409.02 15.07 6.16 6.16 Total: -1.00 -33.09 409.02 -8.69 -41.77 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -8.77 Total: 17.02 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.37 Total: 0.63 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.17 Total: -56.89 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.18 Total: -23.48 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.09 -8.69 -41.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495050290.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.575 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds