Wall clock time and date at job start Tue Mar 31 2020 20:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46631 * 2 1 4 4 H 1.09000 * 109.47150 * 54.42489 * 3 2 1 5 5 N 1.46501 * 109.47477 * 294.41850 * 3 2 1 6 6 C 1.34781 * 119.99693 * 85.00188 * 5 3 2 7 7 C 1.50696 * 119.99693 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00196 * 0.02562 * 6 5 3 9 9 C 1.50700 * 109.46972 * 174.41804 * 3 2 1 10 10 O 1.21286 * 119.99921 * 112.04652 * 9 3 2 11 11 N 1.34778 * 120.00223 * 292.05154 * 9 3 2 12 12 C 1.46933 * 120.55635 * 176.91864 * 11 9 3 13 13 C 1.53341 * 108.68405 * 125.61872 * 12 11 9 14 14 C 1.52105 * 109.44486 * 53.30892 * 13 12 11 15 15 C 1.54389 * 110.50178 * 64.10307 * 14 13 12 16 16 C 1.54465 * 102.86803 * 152.62613 * 15 14 13 17 17 N 1.47082 * 107.29760 * 338.49626 * 16 15 14 18 18 C 1.36944 * 125.62611 * 178.99165 * 17 16 15 19 19 H 1.07991 * 119.99640 * 180.02562 * 18 17 16 20 20 C 1.38813 * 119.99750 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00291 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99699 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46957 * 120.00159 * 22 20 18 25 25 H 1.48493 * 109.47504 * 240.00427 * 22 20 18 26 26 C 1.47577 * 108.74523 * 359.01202 * 17 16 15 27 27 C 1.52104 * 111.60051 * 300.70002 * 14 13 12 28 28 C 1.46932 * 120.55369 * 356.89213 * 11 9 3 29 29 H 1.08998 * 109.47071 * 60.00266 * 1 2 3 30 30 H 1.09008 * 109.46867 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47479 * 299.99573 * 1 2 3 32 32 H 1.08995 * 109.46960 * 240.00356 * 2 1 3 33 33 H 1.08998 * 109.47071 * 119.99734 * 2 1 3 34 34 H 0.96997 * 119.99901 * 265.00250 * 5 3 2 35 35 H 1.09005 * 109.46918 * 90.00059 * 7 6 5 36 36 H 1.08995 * 109.47503 * 209.99726 * 7 6 5 37 37 H 1.08999 * 109.47294 * 330.00490 * 7 6 5 38 38 H 1.09004 * 109.60044 * 5.86319 * 12 11 9 39 39 H 1.08993 * 109.60485 * 245.37684 * 12 11 9 40 40 H 1.09009 * 109.47575 * 293.31806 * 13 12 11 41 41 H 1.08999 * 109.47939 * 173.30748 * 13 12 11 42 42 H 1.08994 * 110.73623 * 34.28173 * 15 14 13 43 43 H 1.09002 * 110.73186 * 270.96439 * 15 14 13 44 44 H 1.08999 * 109.87795 * 97.92538 * 16 15 14 45 45 H 1.09001 * 109.87392 * 219.07306 * 16 15 14 46 46 H 0.96996 * 120.00283 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.37576 * 142.14243 * 26 17 16 48 48 H 1.08993 * 110.37134 * 264.38060 * 26 17 16 49 49 H 1.09002 * 109.47210 * 179.28150 * 27 14 13 50 50 H 1.09000 * 109.47272 * 299.29289 * 27 14 13 51 51 H 1.09004 * 109.59761 * 354.13725 * 28 11 9 52 52 H 1.08997 * 109.59986 * 114.61016 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5973 1.9843 0.8359 5 7 1.6643 2.0933 -1.2576 6 6 0.4481 2.6598 -1.3863 7 6 0.0616 3.3287 -2.6801 8 8 -0.3351 2.6312 -0.4608 9 6 3.5406 1.4449 0.1382 10 8 4.2343 1.8083 -0.7879 11 7 4.1118 1.0430 1.2909 12 6 5.5743 0.9762 1.4163 13 6 6.0009 1.8013 2.6363 14 6 5.2224 1.3383 3.8582 15 6 5.5756 -0.1249 4.2019 16 6 5.3218 -0.1916 5.7241 17 7 5.3823 1.1851 6.2383 18 6 5.1900 1.5590 7.5416 19 1 5.2552 2.6005 7.8197 20 6 4.9114 0.5993 8.5050 21 7 4.8325 -0.6700 8.1660 22 14 4.6499 1.1092 10.2829 23 1 4.7913 2.5827 10.4011 24 1 3.2884 0.7066 10.7182 25 1 5.6614 0.4439 11.1426 26 6 5.6838 2.0970 5.1178 27 6 3.7224 1.4915 3.6576 28 6 3.2826 0.6649 2.4434 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2909 2.1165 -1.9977 35 1 -0.4096 2.5996 -3.3394 36 1 -0.6382 4.1389 -2.4754 37 1 0.9528 3.7312 -3.1615 38 1 6.0373 1.3852 0.5182 39 1 5.8829 -0.0605 1.5500 40 1 5.7947 2.8558 2.4521 41 1 7.0680 1.6651 2.8121 42 1 6.6214 -0.3327 3.9756 43 1 4.9201 -0.8151 3.6708 44 1 4.3368 -0.6165 5.9173 45 1 6.0902 -0.7996 6.2016 46 1 4.6381 -1.3406 8.8393 47 1 5.1268 3.0277 5.2256 48 1 6.7538 2.2992 5.0706 49 1 3.1990 1.1388 4.5463 50 1 3.4839 2.5415 3.4881 51 1 2.2348 0.8686 2.2224 52 1 3.4142 -0.3960 2.6562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495602521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:58 Heat of formation + Delta-G solvation = -49.797762 kcal Electronic energy + Delta-G solvation = -31202.393047 eV Core-core repulsion = 27202.301536 eV Total energy + Delta-G solvation = -4000.091511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.02240 -39.80212 -38.62003 -35.90615 -35.64021 -33.33771 -32.68833 -31.25055 -30.60928 -29.99795 -28.75406 -27.68862 -26.29152 -24.16337 -23.38877 -22.79255 -21.95737 -20.76786 -20.15159 -19.95650 -18.23887 -17.55522 -16.97764 -16.66455 -16.27787 -15.99656 -15.47420 -15.13371 -15.05342 -14.58604 -14.30396 -14.00427 -13.85849 -13.84404 -13.68213 -13.31580 -12.88129 -12.86028 -12.81837 -12.62340 -12.26261 -12.18764 -12.12853 -11.92839 -11.77110 -11.65489 -11.17365 -11.07305 -11.04956 -10.94938 -10.72898 -10.63136 -10.21670 -10.12112 -10.04475 -9.94450 -9.78583 -9.67065 -9.58610 -9.30962 -8.65067 -8.58986 -6.81721 -5.71484 -3.04216 2.31594 2.43214 2.60905 3.15775 3.39213 3.45288 3.47275 4.15370 4.49575 4.53825 4.65787 4.75342 4.84400 4.91965 4.95006 4.99903 5.07183 5.13901 5.15955 5.29174 5.34415 5.41878 5.46342 5.51751 5.54933 5.58435 5.67691 5.74121 5.75933 5.86153 5.91393 5.94615 6.06094 6.08758 6.14233 6.19048 6.21481 6.28924 6.39312 6.51082 6.58760 6.61564 6.80742 6.92339 7.24331 7.26381 7.56891 7.62555 7.82909 7.91166 7.98445 8.25968 9.22798 9.82995 10.49360 11.40170 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.002748 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.672329 B =10186.316676 C =10848.069491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.126 3.874 4 H 0.114 0.886 5 N -0.713 5.713 6 C 0.512 3.488 7 C -0.172 4.172 8 O -0.540 6.540 9 C 0.514 3.486 10 O -0.548 6.548 11 N -0.597 5.597 12 C 0.114 3.886 13 C -0.116 4.116 14 C -0.071 4.071 15 C -0.137 4.137 16 C 0.180 3.820 17 N -0.604 5.604 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.146 3.854 27 C -0.111 4.111 28 C 0.099 3.901 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.409 0.591 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.039 0.961 46 H 0.251 0.749 47 H 0.036 0.964 48 H 0.018 0.982 49 H 0.091 0.909 50 H 0.060 0.940 51 H 0.085 0.915 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.421 2.237 -21.832 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.017 3.983 4 H 0.132 0.868 5 N -0.367 5.367 6 C 0.299 3.701 7 C -0.231 4.231 8 O -0.417 6.417 9 C 0.301 3.699 10 O -0.427 6.427 11 N -0.330 5.330 12 C -0.008 4.008 13 C -0.154 4.154 14 C -0.072 4.072 15 C -0.175 4.175 16 C 0.055 3.945 17 N -0.331 5.331 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.020 3.980 27 C -0.149 4.149 28 C -0.023 4.023 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.036 0.964 49 H 0.109 0.891 50 H 0.079 0.921 51 H 0.103 0.897 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.656 2.314 -21.430 22.284 hybrid contribution 0.281 0.170 0.804 0.868 sum -5.375 2.484 -20.626 21.459 Atomic orbital electron populations 1.21797 0.93833 1.01123 1.03262 1.21997 0.97870 0.93857 1.03456 1.20871 0.91854 0.95952 0.89606 0.86843 1.45864 1.17042 1.57808 1.16030 1.20774 0.81130 0.77862 0.90348 1.21872 1.03756 1.02301 0.95200 1.90749 1.50503 1.58945 1.41542 1.20507 0.89980 0.76921 0.82533 1.90654 1.64294 1.48369 1.39340 1.48075 1.07680 1.65004 1.12206 1.21692 0.78867 1.00779 0.99444 1.21731 1.00257 0.99563 0.93884 1.21025 0.94314 0.97327 0.94575 1.22939 0.99924 0.94524 1.00132 1.21142 1.00484 0.86585 0.86274 1.44518 1.83366 1.01852 1.03332 1.19094 1.40902 0.92907 0.82450 0.90545 1.24775 1.02209 0.95444 0.98066 1.69970 1.55566 0.99398 1.32055 0.86074 0.77404 0.77553 0.84928 1.20571 1.21795 1.21831 1.21470 0.96647 0.93280 0.86611 1.21641 0.96196 0.99666 0.97444 1.22123 0.94411 1.00238 0.85537 0.92466 0.92961 0.91746 0.91248 0.89938 0.75358 0.88844 0.88748 0.90079 0.89305 0.91050 0.91908 0.90566 0.92538 0.92267 0.93719 0.94259 0.93887 0.94555 0.96435 0.89091 0.92087 0.89716 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.53 37.16 0.32 -1.10 16 2 C -0.13 -1.25 5.21 -26.73 -0.14 -1.39 16 3 C 0.13 1.34 1.80 -69.08 -0.12 1.22 16 4 H 0.11 1.33 6.56 -51.93 -0.34 0.99 16 5 N -0.71 -6.81 4.95 -54.93 -0.27 -7.09 16 6 C 0.51 5.04 6.53 -10.99 -0.07 4.96 16 7 C -0.17 -1.00 10.30 36.00 0.37 -0.63 16 8 O -0.54 -7.25 14.24 5.56 0.08 -7.17 16 9 C 0.51 6.33 7.06 -10.98 -0.08 6.25 16 10 O -0.55 -7.94 15.23 5.55 0.08 -7.86 16 11 N -0.60 -7.16 2.96 -172.58 -0.51 -7.67 16 12 C 0.11 1.38 6.17 -3.63 -0.02 1.36 16 13 C -0.12 -1.52 4.84 -27.01 -0.13 -1.65 16 14 C -0.07 -1.12 0.55 -154.11 -0.08 -1.20 16 15 C -0.14 -2.32 4.92 -25.23 -0.12 -2.45 16 16 C 0.18 4.14 5.00 -2.96 -0.01 4.13 16 17 N -0.60 -14.82 3.39 -170.31 -0.58 -15.40 16 18 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -26.59 10.31 55.49 0.57 -26.02 16 22 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.15 2.89 6.15 -2.87 -0.02 2.87 16 27 C -0.11 -1.63 4.85 -27.02 -0.13 -1.76 16 28 C 0.10 1.16 4.67 -3.63 -0.02 1.15 16 29 H 0.06 0.61 5.63 -51.93 -0.29 0.31 16 30 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.74 6.01 -51.93 -0.31 0.43 16 34 H 0.41 3.50 7.73 -40.82 -0.32 3.19 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 1.10 6.99 -51.93 -0.36 0.74 16 39 H 0.07 0.82 7.62 -51.93 -0.40 0.42 16 40 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 43 H 0.06 0.90 6.17 -51.93 -0.32 0.58 16 44 H 0.04 1.14 7.39 -51.93 -0.38 0.75 16 45 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.04 0.72 8.02 -51.93 -0.42 0.30 16 48 H 0.02 0.36 7.99 -51.93 -0.42 -0.06 16 49 H 0.09 1.57 7.82 -51.93 -0.41 1.16 16 50 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 51 H 0.08 0.88 4.97 -51.93 -0.26 0.62 16 52 H 0.08 0.91 6.55 -51.93 -0.34 0.57 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -32.38 388.32 -9.01 -41.39 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.70 Total: 1.93 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.52 Total: 5.09 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.79 Total: -56.18 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.16 Total: -15.03 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.38 -9.01 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495602521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.408 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds