Wall clock time and date at job start Tue Mar 31 2020 20:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46631 * 2 1 4 4 H 1.09000 * 109.47150 * 54.42489 * 3 2 1 5 5 N 1.46501 * 109.47477 * 294.41850 * 3 2 1 6 6 C 1.34781 * 119.99693 * 85.00188 * 5 3 2 7 7 C 1.50696 * 119.99693 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00196 * 0.02562 * 6 5 3 9 9 C 1.50700 * 109.46972 * 174.41804 * 3 2 1 10 10 O 1.21286 * 119.99921 * 112.04652 * 9 3 2 11 11 N 1.34778 * 120.00223 * 292.05154 * 9 3 2 12 12 C 1.46933 * 120.55635 * 176.91864 * 11 9 3 13 13 C 1.53341 * 108.68405 * 125.61872 * 12 11 9 14 14 C 1.52105 * 109.44486 * 53.30892 * 13 12 11 15 15 C 1.54389 * 110.50178 * 64.10307 * 14 13 12 16 16 C 1.54465 * 102.86803 * 152.62613 * 15 14 13 17 17 N 1.47082 * 107.29760 * 338.49626 * 16 15 14 18 18 C 1.36944 * 125.62611 * 178.99165 * 17 16 15 19 19 H 1.07991 * 119.99640 * 180.02562 * 18 17 16 20 20 C 1.38813 * 119.99750 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00291 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99699 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47052 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46957 * 120.00159 * 22 20 18 25 25 H 1.48493 * 109.47504 * 240.00427 * 22 20 18 26 26 C 1.47577 * 108.74523 * 359.01202 * 17 16 15 27 27 C 1.52104 * 111.60051 * 300.70002 * 14 13 12 28 28 C 1.46932 * 120.55369 * 356.89213 * 11 9 3 29 29 H 1.08998 * 109.47071 * 60.00266 * 1 2 3 30 30 H 1.09008 * 109.46867 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47479 * 299.99573 * 1 2 3 32 32 H 1.08995 * 109.46960 * 240.00356 * 2 1 3 33 33 H 1.08998 * 109.47071 * 119.99734 * 2 1 3 34 34 H 0.96997 * 119.99901 * 265.00250 * 5 3 2 35 35 H 1.09005 * 109.46918 * 90.00059 * 7 6 5 36 36 H 1.08995 * 109.47503 * 209.99726 * 7 6 5 37 37 H 1.08999 * 109.47294 * 330.00490 * 7 6 5 38 38 H 1.09004 * 109.60044 * 5.86319 * 12 11 9 39 39 H 1.08993 * 109.60485 * 245.37684 * 12 11 9 40 40 H 1.09009 * 109.47575 * 293.31806 * 13 12 11 41 41 H 1.08999 * 109.47939 * 173.30748 * 13 12 11 42 42 H 1.08994 * 110.73623 * 34.28173 * 15 14 13 43 43 H 1.09002 * 110.73186 * 270.96439 * 15 14 13 44 44 H 1.08999 * 109.87795 * 97.92538 * 16 15 14 45 45 H 1.09001 * 109.87392 * 219.07306 * 16 15 14 46 46 H 0.96996 * 120.00283 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.37576 * 142.14243 * 26 17 16 48 48 H 1.08993 * 110.37134 * 264.38060 * 26 17 16 49 49 H 1.09002 * 109.47210 * 179.28150 * 27 14 13 50 50 H 1.09000 * 109.47272 * 299.29289 * 27 14 13 51 51 H 1.09004 * 109.59761 * 354.13725 * 28 11 9 52 52 H 1.08997 * 109.59986 * 114.61016 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5973 1.9843 0.8359 5 7 1.6643 2.0933 -1.2576 6 6 0.4481 2.6598 -1.3863 7 6 0.0616 3.3287 -2.6801 8 8 -0.3351 2.6312 -0.4608 9 6 3.5406 1.4449 0.1382 10 8 4.2343 1.8083 -0.7879 11 7 4.1118 1.0430 1.2909 12 6 5.5743 0.9762 1.4163 13 6 6.0009 1.8013 2.6363 14 6 5.2224 1.3383 3.8582 15 6 5.5756 -0.1249 4.2019 16 6 5.3218 -0.1916 5.7241 17 7 5.3823 1.1851 6.2383 18 6 5.1900 1.5590 7.5416 19 1 5.2552 2.6005 7.8197 20 6 4.9114 0.5993 8.5050 21 7 4.8325 -0.6700 8.1660 22 14 4.6499 1.1092 10.2829 23 1 4.7913 2.5827 10.4011 24 1 3.2884 0.7066 10.7182 25 1 5.6614 0.4439 11.1426 26 6 5.6838 2.0970 5.1178 27 6 3.7224 1.4915 3.6576 28 6 3.2826 0.6649 2.4434 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2909 2.1165 -1.9977 35 1 -0.4096 2.5996 -3.3394 36 1 -0.6382 4.1389 -2.4754 37 1 0.9528 3.7312 -3.1615 38 1 6.0373 1.3852 0.5182 39 1 5.8829 -0.0605 1.5500 40 1 5.7947 2.8558 2.4521 41 1 7.0680 1.6651 2.8121 42 1 6.6214 -0.3327 3.9756 43 1 4.9201 -0.8151 3.6708 44 1 4.3368 -0.6165 5.9173 45 1 6.0902 -0.7996 6.2016 46 1 4.6381 -1.3406 8.8393 47 1 5.1268 3.0277 5.2256 48 1 6.7538 2.2992 5.0706 49 1 3.1990 1.1388 4.5463 50 1 3.4839 2.5415 3.4881 51 1 2.2348 0.8686 2.2224 52 1 3.4142 -0.3960 2.6562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495602521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:57 Heat of formation + Delta-G solvation = -70.923715 kcal Electronic energy + Delta-G solvation = -31203.309138 eV Core-core repulsion = 27202.301536 eV Total energy + Delta-G solvation = -4001.007601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.00242 -40.81717 -39.79121 -37.27214 -36.50360 -34.86521 -33.66115 -32.53600 -32.05639 -30.61036 -30.42548 -28.80403 -27.56981 -25.87630 -24.51402 -23.93966 -22.84698 -21.93605 -21.58627 -20.99024 -19.48435 -18.77277 -18.20393 -17.86707 -17.20795 -16.84131 -16.80079 -16.35745 -16.33717 -16.01966 -15.63532 -15.13151 -14.92461 -14.86650 -14.76928 -14.42794 -14.09661 -14.05866 -13.89956 -13.56499 -13.36813 -13.32703 -13.09900 -13.02772 -12.95084 -12.85225 -12.77563 -12.49402 -12.27205 -12.23801 -12.09372 -11.94165 -11.87514 -11.77500 -11.47769 -11.26685 -11.05906 -10.92899 -10.84853 -10.67922 -10.12944 -9.67878 -8.84173 -7.83160 -5.16951 1.39648 1.45611 1.45750 1.55886 1.62332 1.75987 2.35856 2.50078 3.23038 3.34922 3.61151 3.71951 3.75200 3.84821 3.91246 3.94209 4.01595 4.11248 4.21030 4.33355 4.35567 4.45912 4.49930 4.55582 4.58703 4.64424 4.68035 4.71997 4.80339 4.82703 4.84092 4.89314 4.97020 5.00247 5.05362 5.08058 5.11921 5.13947 5.18687 5.33450 5.37820 5.42153 5.44853 5.48552 5.59750 5.74675 5.84743 6.23267 6.27501 6.53722 6.95488 7.14271 7.24345 7.81758 8.46017 9.26940 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.002748 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.672329 B =10186.316676 C =10848.069491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.128 3.872 4 H 0.102 0.898 5 N -0.709 5.709 6 C 0.507 3.493 7 C -0.165 4.165 8 O -0.581 6.581 9 C 0.517 3.483 10 O -0.568 6.568 11 N -0.596 5.596 12 C 0.117 3.883 13 C -0.107 4.107 14 C -0.057 4.057 15 C -0.119 4.119 16 C 0.188 3.812 17 N -0.624 5.624 18 C -0.237 4.237 19 H 0.077 0.923 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.973 3.027 23 H -0.269 1.269 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.140 3.860 27 C -0.108 4.108 28 C 0.108 3.892 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.416 0.584 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.012 0.988 45 H -0.001 1.001 46 H 0.245 0.755 47 H 0.033 0.967 48 H 0.021 0.979 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.099 0.901 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 2.580 -24.099 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.019 3.981 4 H 0.120 0.880 5 N -0.363 5.363 6 C 0.296 3.704 7 C -0.224 4.224 8 O -0.461 6.461 9 C 0.305 3.695 10 O -0.447 6.447 11 N -0.328 5.328 12 C -0.005 4.005 13 C -0.145 4.145 14 C -0.058 4.058 15 C -0.157 4.157 16 C 0.063 3.937 17 N -0.350 5.350 18 C -0.367 4.367 19 H 0.095 0.905 20 C -0.258 4.258 21 N -0.598 5.598 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.221 1.221 26 C 0.015 3.985 27 C -0.146 4.146 28 C -0.014 4.014 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.254 0.746 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.030 0.970 45 H 0.017 0.983 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.039 0.961 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.117 0.883 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.553 2.684 -23.736 24.525 hybrid contribution 0.278 0.124 1.515 1.545 sum -5.274 2.808 -22.221 23.011 Atomic orbital electron populations 1.21723 0.94188 1.01476 1.02081 1.21966 0.97372 0.93049 1.04181 1.20820 0.90661 0.96725 0.89931 0.88023 1.45893 1.17200 1.57488 1.15751 1.21509 0.80531 0.77204 0.91165 1.21899 1.04785 1.02437 0.93289 1.90735 1.51591 1.60530 1.43270 1.20696 0.90413 0.76220 0.82190 1.90648 1.64877 1.49220 1.39992 1.48081 1.07772 1.64823 1.12091 1.21699 0.78784 1.01292 0.98696 1.21651 1.00374 0.99740 0.92767 1.20926 0.95328 0.95596 0.93959 1.22797 1.01424 0.96004 0.95519 1.20902 0.97284 0.85350 0.90118 1.44799 1.83139 1.03397 1.03693 1.19435 1.40077 0.93009 0.84135 0.90534 1.25555 1.02787 0.95579 1.01852 1.70181 1.56686 1.00162 1.32765 0.85090 0.76791 0.77704 0.80254 1.19310 1.21925 1.22063 1.21680 0.96740 0.92991 0.87123 1.21545 0.95157 1.00218 0.97673 1.22045 0.95149 1.00038 0.84138 0.93233 0.91757 0.93372 0.90405 0.89265 0.74587 0.86960 0.88704 0.88073 0.89081 0.89685 0.91863 0.89520 0.91122 0.89815 0.96971 0.98304 0.94526 0.94873 0.96108 0.92068 0.92025 0.88257 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.53 71.98 0.61 -1.94 16 2 C -0.13 -2.14 5.21 30.60 0.16 -1.98 16 3 C 0.13 2.51 1.80 44.24 0.08 2.59 16 4 H 0.10 2.29 6.56 -2.39 -0.02 2.27 16 5 N -0.71 -12.34 4.95 -446.10 -2.21 -14.55 16 6 C 0.51 9.30 6.53 87.66 0.57 9.87 16 7 C -0.17 -1.54 10.30 71.23 0.73 -0.81 16 8 O -0.58 -15.35 14.24 -3.01 -0.04 -15.39 16 9 C 0.52 11.54 7.06 87.66 0.62 12.16 16 10 O -0.57 -15.08 15.23 -3.05 -0.05 -15.12 16 11 N -0.60 -12.74 2.96 -818.30 -2.42 -15.16 16 12 C 0.12 2.46 6.17 86.41 0.53 2.99 16 13 C -0.11 -2.53 4.84 30.41 0.15 -2.38 16 14 C -0.06 -1.72 0.55 -51.92 -0.03 -1.74 16 15 C -0.12 -3.90 4.92 31.56 0.16 -3.75 16 16 C 0.19 8.91 5.00 86.77 0.43 9.35 16 17 N -0.62 -31.29 3.39 -692.73 -2.35 -33.64 16 18 C -0.24 -13.26 10.28 84.03 0.86 -12.40 16 19 H 0.08 4.15 7.83 -2.92 -0.02 4.13 16 20 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 21 N -0.95 -56.62 10.31 21.65 0.22 -56.40 16 22 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 C 0.14 5.50 6.15 86.55 0.53 6.03 16 27 C -0.11 -3.06 4.85 30.41 0.15 -2.91 16 28 C 0.11 2.33 4.67 86.41 0.40 2.73 16 29 H 0.05 0.99 5.63 -2.39 -0.01 0.98 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 1.05 7.88 -2.39 -0.02 1.03 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.38 6.01 -2.39 -0.01 1.37 16 34 H 0.42 6.22 7.73 -92.71 -0.72 5.51 16 35 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 1.96 6.99 -2.38 -0.02 1.95 16 39 H 0.08 1.60 7.62 -2.39 -0.02 1.59 16 40 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 42 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 43 H 0.08 2.35 6.17 -2.39 -0.01 2.33 16 44 H 0.01 0.64 7.39 -2.39 -0.02 0.62 16 45 H 0.00 -0.07 7.50 -2.39 -0.02 -0.09 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.03 1.31 8.02 -2.39 -0.02 1.29 16 48 H 0.02 0.82 7.99 -2.39 -0.02 0.80 16 49 H 0.06 2.14 7.82 -2.39 -0.02 2.12 16 50 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.10 1.89 4.97 -2.38 -0.01 1.88 16 52 H 0.09 1.79 6.55 -2.39 -0.02 1.78 16 Total: -1.00 -72.48 388.32 1.82 -70.66 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.20 Total: 16.98 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.43 Total: 14.59 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -6.75 Total: -119.74 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.09 Total: -30.52 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -72.48 1.82 -70.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495602521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.264 kcal (2) G-P(sol) polarization free energy of solvation -72.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds