Wall clock time and date at job start Tue Mar 31 2020 20:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47154 * 2 1 4 4 H 1.08998 * 109.47274 * 305.67779 * 3 2 1 5 5 N 1.46504 * 109.47285 * 65.67976 * 3 2 1 6 6 C 1.34770 * 120.00146 * 275.00362 * 5 3 2 7 7 C 1.50697 * 120.00047 * 179.97438 * 6 5 3 8 8 O 1.21281 * 119.99628 * 359.97438 * 6 5 3 9 9 C 1.50706 * 109.47182 * 185.67688 * 3 2 1 10 10 O 1.21279 * 120.00432 * 265.99290 * 9 3 2 11 11 N 1.34783 * 119.99809 * 85.99095 * 9 3 2 12 12 C 1.46934 * 120.55471 * 175.15918 * 11 9 3 13 13 C 1.53342 * 108.68220 * 125.62553 * 12 11 9 14 14 C 1.52106 * 109.44410 * 53.30749 * 13 12 11 15 15 C 1.54397 * 110.50727 * 64.08455 * 14 13 12 16 16 C 1.54457 * 102.86666 * 83.33178 * 15 14 13 17 17 N 1.47079 * 107.30262 * 21.50747 * 16 15 14 18 18 C 1.36932 * 125.63030 * 180.96657 * 17 16 15 19 19 H 1.07999 * 119.99868 * 185.33076 * 18 17 16 20 20 C 1.38807 * 120.00135 * 5.33689 * 18 17 16 21 21 N 1.31623 * 120.00090 * 5.86279 * 20 18 17 22 22 Si 1.86806 * 120.00092 * 185.86802 * 20 18 17 23 23 H 1.48495 * 109.47093 * 265.00070 * 22 20 18 24 24 H 1.48499 * 109.46959 * 25.00445 * 22 20 18 25 25 H 1.48502 * 109.46842 * 145.00122 * 22 20 18 26 26 C 1.47582 * 108.74045 * 1.22632 * 17 16 15 27 27 C 1.52106 * 111.59929 * 300.68939 * 14 13 12 28 28 C 1.46934 * 120.54799 * 355.13562 * 11 9 3 29 29 H 1.08999 * 109.47440 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47393 * 300.00145 * 1 2 3 31 31 H 1.08997 * 109.47196 * 59.99845 * 1 2 3 32 32 H 1.09005 * 109.47393 * 239.99855 * 2 1 3 33 33 H 1.08997 * 109.47196 * 120.00154 * 2 1 3 34 34 H 0.97006 * 119.99505 * 94.99642 * 5 3 2 35 35 H 1.09000 * 109.47141 * 359.97438 * 7 6 5 36 36 H 1.09002 * 109.46868 * 119.99961 * 7 6 5 37 37 H 1.08999 * 109.46790 * 239.99327 * 7 6 5 38 38 H 1.09004 * 109.59848 * 5.86555 * 12 11 9 39 39 H 1.08997 * 109.60001 * 245.38804 * 12 11 9 40 40 H 1.08999 * 109.47739 * 293.31232 * 13 12 11 41 41 H 1.09007 * 109.46908 * 173.29705 * 13 12 11 42 42 H 1.09000 * 110.73569 * 324.98604 * 15 14 13 43 43 H 1.09002 * 110.73033 * 201.67034 * 15 14 13 44 44 H 1.09000 * 109.88041 * 262.07534 * 16 15 14 45 45 H 1.09003 * 109.87766 * 140.92989 * 16 15 14 46 46 H 0.96996 * 120.00269 * 180.02562 * 21 20 18 47 47 H 1.09002 * 110.37524 * 95.26531 * 26 17 16 48 48 H 1.08998 * 110.37485 * 217.61567 * 26 17 16 49 49 H 1.09002 * 109.47197 * 179.29401 * 27 14 13 50 50 H 1.09001 * 109.47268 * 299.30895 * 27 14 13 51 51 H 1.08993 * 109.60308 * 354.12916 * 28 11 9 52 52 H 1.09000 * 109.60043 * 114.61155 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 7 1.6664 2.0925 1.2587 6 6 0.4505 2.6589 1.3897 7 6 0.0661 3.3271 2.6846 8 8 -0.3342 2.6308 0.4655 9 6 3.5404 1.4448 -0.1405 10 8 4.2421 1.4845 0.8479 11 7 4.1026 1.4027 -1.3648 12 6 5.5595 1.5110 -1.5218 13 6 6.0576 0.3059 -2.3287 14 6 5.2700 0.2049 -3.6261 15 6 5.5331 1.4388 -4.5161 16 6 6.8492 1.0697 -5.2355 17 7 6.9785 -0.3946 -5.1868 18 6 8.0205 -1.1208 -5.6985 19 1 7.9826 -2.2001 -5.6890 20 6 9.1256 -0.4699 -6.2293 21 7 9.2252 0.8393 -6.1373 22 14 10.4714 -1.4519 -7.0743 23 1 11.5548 -1.7454 -6.1021 24 1 9.9069 -2.7265 -7.5862 25 1 11.0222 -0.6644 -8.2065 26 6 5.7967 -0.9524 -4.5010 27 6 3.7801 0.0436 -3.3656 28 6 3.2688 1.2471 -2.5646 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2943 2.1152 1.9978 35 1 0.8925 3.2522 3.3914 36 1 -0.1594 4.3772 2.4986 37 1 -0.8130 2.8348 3.1004 38 1 6.0337 1.5152 -0.5403 39 1 5.8027 2.4319 -2.0519 40 1 5.9169 -0.6046 -1.7463 41 1 7.1163 0.4328 -2.5552 42 1 5.6641 2.3332 -3.9069 43 1 4.7254 1.5751 -5.2352 44 1 7.6933 1.5335 -4.7251 45 1 6.8112 1.4041 -6.2722 46 1 9.9973 1.2943 -6.5085 47 1 5.0433 -1.2548 -5.2285 48 1 6.0843 -1.7986 -3.8771 49 1 3.2491 -0.0126 -4.3159 50 1 3.6074 -0.8707 -2.7980 51 1 2.2331 1.0772 -2.2706 52 1 3.3350 2.1476 -3.1752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495602522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:00 Heat of formation + Delta-G solvation = -72.255885 kcal Electronic energy + Delta-G solvation = -31095.583920 eV Core-core repulsion = 27094.518551 eV Total energy + Delta-G solvation = -4001.065368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.97835 -40.80649 -39.78115 -37.28360 -36.44539 -34.82740 -33.64540 -32.47711 -32.22832 -30.60981 -30.41888 -28.68695 -27.61493 -25.94528 -24.38403 -23.92548 -22.92792 -21.94648 -21.58493 -20.94862 -19.42433 -18.79318 -18.22296 -17.84252 -17.20963 -16.80501 -16.77433 -16.43987 -16.27346 -16.03867 -15.63541 -15.15278 -14.97183 -14.80897 -14.73426 -14.41892 -14.10063 -14.08448 -13.90690 -13.52799 -13.41589 -13.30291 -13.08209 -13.00404 -12.98930 -12.81969 -12.72600 -12.47689 -12.34314 -12.21211 -12.04200 -11.93006 -11.87744 -11.79805 -11.49984 -11.25132 -11.12649 -10.90935 -10.80597 -10.69433 -10.12325 -9.67757 -8.83838 -7.81870 -5.18502 1.36524 1.44806 1.45703 1.54983 1.64438 1.74991 2.39562 2.49912 3.25029 3.34088 3.61136 3.69508 3.85880 3.86845 3.89404 3.92457 4.02773 4.13050 4.22383 4.28778 4.35159 4.47541 4.51356 4.56051 4.58385 4.69280 4.70805 4.71809 4.76532 4.81541 4.83207 4.90743 4.98492 5.01811 5.08579 5.10026 5.12596 5.13595 5.19474 5.33702 5.38332 5.42449 5.45057 5.48269 5.61728 5.69650 5.85757 6.24268 6.30589 6.53099 6.96212 7.12885 7.23375 7.81596 8.45978 9.26040 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.002427 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.581486 B =11536.332858 C =11775.615394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.131 3.869 4 H 0.112 0.888 5 N -0.712 5.712 6 C 0.509 3.491 7 C -0.165 4.165 8 O -0.577 6.577 9 C 0.514 3.486 10 O -0.573 6.573 11 N -0.597 5.597 12 C 0.121 3.879 13 C -0.100 4.100 14 C -0.057 4.057 15 C -0.120 4.120 16 C 0.182 3.818 17 N -0.624 5.624 18 C -0.238 4.238 19 H 0.078 0.922 20 C -0.067 4.067 21 N -0.949 5.949 22 Si 0.973 3.027 23 H -0.288 1.288 24 H -0.269 1.269 25 H -0.295 1.295 26 C 0.140 3.860 27 C -0.109 4.109 28 C 0.103 3.897 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.414 0.586 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.021 0.979 45 H -0.012 1.012 46 H 0.245 0.755 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.095 0.905 50 H 0.075 0.925 51 H 0.109 0.891 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.380 3.052 16.181 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 C 0.022 3.978 4 H 0.130 0.870 5 N -0.366 5.366 6 C 0.298 3.702 7 C -0.224 4.224 8 O -0.457 6.457 9 C 0.302 3.698 10 O -0.452 6.452 11 N -0.329 5.329 12 C -0.001 4.001 13 C -0.139 4.139 14 C -0.058 4.058 15 C -0.158 4.158 16 C 0.057 3.943 17 N -0.350 5.350 18 C -0.367 4.367 19 H 0.096 0.904 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.802 3.198 23 H -0.215 1.215 24 H -0.194 1.194 25 H -0.222 1.222 26 C 0.015 3.985 27 C -0.148 4.148 28 C -0.019 4.019 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.252 0.748 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.039 0.961 45 H 0.006 0.994 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.051 0.949 49 H 0.114 0.886 50 H 0.094 0.906 51 H 0.127 0.873 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.370 3.084 15.941 26.049 hybrid contribution 1.918 -0.403 -0.601 2.049 sum -18.452 2.680 15.340 24.145 Atomic orbital electron populations 1.21713 0.93678 1.01496 1.02344 1.21880 0.97597 0.93088 1.03788 1.20897 0.89893 0.96853 0.90127 0.87000 1.46021 1.17341 1.57440 1.15837 1.21443 0.80422 0.77152 0.91143 1.21879 1.04853 1.02582 0.93115 1.90721 1.51324 1.60426 1.43224 1.20891 0.90766 0.75399 0.82785 1.90663 1.64680 1.51881 1.37998 1.48134 1.07580 1.70774 1.06410 1.21562 0.79652 0.98270 1.00661 1.21460 0.99273 0.98030 0.95119 1.20984 0.95714 0.95279 0.93836 1.22781 0.97285 0.97483 0.98214 1.20960 0.94189 0.83687 0.95428 1.44795 1.20321 1.02919 1.66982 1.19414 0.95240 0.90562 1.31490 0.90393 1.25599 1.00511 0.96849 1.03053 1.70183 1.30371 1.07919 1.51338 0.85135 0.79204 0.77800 0.77661 1.21525 1.19424 1.22170 1.21761 0.88511 0.95092 0.93150 1.21705 0.93074 0.98484 1.01500 1.22105 0.94950 0.99472 0.85371 0.91901 0.93394 0.92570 0.89366 0.91285 0.74836 0.88546 0.87877 0.87600 0.90118 0.90637 0.92120 0.93069 0.90570 0.90553 0.96072 0.99385 0.94588 0.95253 0.94870 0.88636 0.90635 0.87283 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.53 71.98 0.61 -1.56 16 2 C -0.12 -1.98 5.30 30.59 0.16 -1.81 16 3 C 0.13 2.35 1.78 44.25 0.08 2.43 16 4 H 0.11 2.02 6.10 -2.39 -0.01 2.00 16 5 N -0.71 -11.59 5.01 -446.10 -2.24 -13.83 16 6 C 0.51 8.33 6.54 87.66 0.57 8.91 16 7 C -0.17 -1.34 10.39 71.23 0.74 -0.60 16 8 O -0.58 -13.39 14.24 -3.03 -0.04 -13.43 16 9 C 0.51 11.68 6.89 87.66 0.60 12.28 16 10 O -0.57 -16.43 15.43 -3.02 -0.05 -16.48 16 11 N -0.60 -13.17 2.96 -818.27 -2.42 -15.59 16 12 C 0.12 3.22 6.13 86.41 0.53 3.75 16 13 C -0.10 -3.11 4.87 30.41 0.15 -2.96 16 14 C -0.06 -1.70 0.55 -51.84 -0.03 -1.73 16 15 C -0.12 -3.97 4.92 31.56 0.16 -3.81 16 16 C 0.18 8.78 5.05 86.76 0.44 9.22 16 17 N -0.62 -31.43 3.38 -692.30 -2.34 -33.77 16 18 C -0.24 -13.33 10.27 84.03 0.86 -12.47 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.07 -3.85 5.46 84.86 0.46 -3.38 16 21 N -0.95 -57.37 10.42 21.65 0.23 -57.15 16 22 Si 0.97 46.21 29.56 68.60 2.03 48.23 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 C 0.14 5.39 6.16 86.63 0.53 5.92 16 27 C -0.11 -2.23 4.84 30.41 0.15 -2.08 16 28 C 0.10 1.78 5.68 86.41 0.49 2.27 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.87 5.63 -2.38 -0.01 0.86 16 31 H 0.06 0.99 7.89 -2.39 -0.02 0.97 16 32 H 0.09 1.24 7.31 -2.38 -0.02 1.23 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.41 6.17 7.63 -92.70 -0.71 5.47 16 35 H 0.10 0.41 7.91 -2.39 -0.02 0.39 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 2.32 6.99 -2.38 -0.02 2.30 16 39 H 0.08 1.99 6.55 -2.39 -0.02 1.97 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.99 7.82 -2.38 -0.02 1.97 16 42 H 0.08 2.30 6.17 -2.39 -0.01 2.28 16 43 H 0.08 2.25 7.98 -2.39 -0.02 2.23 16 44 H 0.02 1.17 6.94 -2.39 -0.02 1.15 16 45 H -0.01 -0.66 7.92 -2.39 -0.02 -0.68 16 46 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 48 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 49 H 0.10 1.72 8.09 -2.39 -0.02 1.70 16 50 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 51 H 0.11 1.42 4.93 -2.39 -0.01 1.41 16 52 H 0.08 1.40 7.62 -2.39 -0.02 1.38 16 Total: -1.00 -73.71 390.17 1.89 -71.83 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.21 Total: 15.83 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.51 Total: 14.35 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -6.78 Total: -120.34 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.09 Total: -29.91 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.71 1.89 -71.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495602522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.431 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds