Wall clock time and date at job start Tue Mar 31 2020 20:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47268 * 2 1 4 4 H 1.09003 * 109.47374 * 305.00119 * 3 2 1 5 5 C 1.52998 * 109.47088 * 64.99869 * 3 2 1 6 6 C 1.50704 * 109.47418 * 184.99676 * 3 2 1 7 7 O 1.21274 * 119.99778 * 344.72118 * 6 3 2 8 8 N 1.34779 * 120.00210 * 164.71025 * 6 3 2 9 9 C 1.46890 * 120.46450 * 174.79351 * 8 6 3 10 10 C 1.53356 * 108.74330 * 124.39818 * 9 8 6 11 11 C 1.52571 * 109.12217 * 52.27932 * 10 9 8 12 12 C 1.52982 * 114.02839 * 75.40058 * 11 10 9 13 13 N 1.47578 * 87.80217 * 139.45861 * 12 11 10 14 14 C 1.46893 * 111.00204 * 221.69495 * 13 12 11 15 15 C 1.50698 * 109.47280 * 169.99851 * 14 13 12 16 16 O 1.21294 * 119.99916 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00389 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99845 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00270 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99610 * 179.72717 * 18 17 15 21 21 N 1.31415 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47131 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47358 * 119.99756 * 22 20 18 25 25 H 1.48505 * 109.47089 * 239.99813 * 22 20 18 26 26 C 1.47581 * 87.94605 * 333.43558 * 13 12 11 27 27 C 1.52563 * 113.40699 * 302.63856 * 11 10 9 28 28 C 1.46880 * 120.46060 * 354.82014 * 8 6 3 29 29 H 1.09005 * 109.46973 * 59.99563 * 1 2 3 30 30 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47329 * 299.99940 * 1 2 3 32 32 H 1.08999 * 109.47329 * 240.00060 * 2 1 3 33 33 H 1.09001 * 109.47604 * 120.00064 * 2 1 3 34 34 H 1.09004 * 109.47184 * 53.62705 * 5 3 2 35 35 H 1.09003 * 109.47292 * 173.62347 * 5 3 2 36 36 H 1.08993 * 109.47310 * 293.62277 * 5 3 2 37 37 H 1.09003 * 109.58914 * 4.62425 * 9 8 6 38 38 H 1.09003 * 109.59149 * 244.17727 * 9 8 6 39 39 H 1.09002 * 109.52845 * 292.38812 * 10 9 8 40 40 H 1.08995 * 109.58720 * 172.20781 * 10 9 8 41 41 H 1.09002 * 113.49934 * 24.72836 * 12 11 10 42 42 H 1.09002 * 113.50120 * 254.19389 * 12 11 10 43 43 H 1.09003 * 109.46720 * 50.00358 * 14 13 12 44 44 H 1.09001 * 109.47642 * 290.00217 * 14 13 12 45 45 H 0.97001 * 119.99404 * 0.02562 * 17 15 14 46 46 H 0.96993 * 119.99755 * 180.02562 * 21 20 18 47 47 H 1.08997 * 113.49618 * 141.29794 * 26 13 12 48 48 H 1.09001 * 113.49371 * 271.83455 * 26 13 12 49 49 H 1.09004 * 109.52944 * 177.24045 * 27 11 10 50 50 H 1.08997 * 109.53399 * 297.45888 * 27 11 10 51 51 H 1.08997 * 109.59767 * 355.37024 * 28 8 6 52 52 H 1.09007 * 109.59295 * 115.81183 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1678 0.4243 0.0728 8 7 4.1896 2.5795 -0.4530 9 6 5.6578 2.6224 -0.4654 10 6 6.1255 3.0905 -1.8488 11 6 5.4097 4.3899 -2.2052 12 6 5.9439 5.6183 -1.4663 13 7 5.8025 6.3688 -2.7291 14 6 6.9575 7.2489 -2.9506 15 6 6.9018 7.8087 -4.3486 16 8 5.9893 7.5048 -5.0876 17 7 7.8659 8.6471 -4.7779 18 6 7.8148 9.1566 -6.0496 19 1 7.0023 8.8860 -6.7076 20 6 8.8057 10.0254 -6.4902 21 7 9.7915 10.3590 -5.6877 22 14 8.7358 10.7204 -8.2226 23 1 7.5345 10.1940 -8.9190 24 1 8.6620 12.2022 -8.1590 25 1 9.9556 10.3169 -8.9674 26 6 5.9671 5.0895 -3.4461 27 6 3.8890 4.2680 -2.1897 28 6 3.4372 3.7911 -0.8039 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9736 1.5259 2.1516 35 1 2.0932 3.1144 1.3575 36 1 0.5505 2.2267 1.3443 37 1 6.0543 1.6274 -0.2629 38 1 6.0095 3.3200 0.2948 39 1 5.8880 2.3283 -2.5909 40 1 7.2021 3.2602 -1.8325 41 1 6.9776 5.5121 -1.1373 42 1 5.2827 5.9710 -0.6747 43 1 7.8780 6.6790 -2.8238 44 1 6.9346 8.0669 -2.2305 45 1 8.5958 8.8898 -4.1869 46 1 10.4830 10.9657 -5.9952 47 1 5.3254 4.9967 -4.3223 48 1 7.0071 4.8394 -3.6556 49 1 3.4434 5.2394 -2.4039 50 1 3.5735 3.5469 -2.9438 51 1 2.3709 3.5661 -0.8246 52 1 3.6342 4.5700 -0.0672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495970761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:24 Heat of formation + Delta-G solvation = -46.542667 kcal Electronic energy + Delta-G solvation = -29906.241850 eV Core-core repulsion = 25906.291490 eV Total energy + Delta-G solvation = -3999.950360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26715 -40.03058 -37.98361 -36.51137 -35.76062 -33.93381 -32.50074 -31.54450 -31.19983 -29.98567 -28.52120 -26.26451 -25.72236 -25.09853 -23.99058 -23.64542 -22.28130 -21.15799 -19.48649 -19.19234 -18.21009 -17.87714 -17.17953 -16.29266 -16.10832 -15.82086 -15.62044 -15.26720 -14.84579 -14.74797 -14.53876 -14.36378 -13.99084 -13.87986 -13.71837 -13.54695 -13.11836 -12.95654 -12.81497 -12.63067 -12.42294 -12.31455 -12.10590 -12.03125 -11.94570 -11.82674 -11.53114 -11.40438 -11.29147 -11.13446 -11.06134 -11.01587 -10.69255 -10.39623 -10.35804 -10.25075 -10.18861 -9.81684 -9.52485 -8.83414 -8.68158 -8.24682 -7.97535 -6.43078 -3.83827 2.41732 2.75346 3.15066 3.25667 3.32906 3.88682 4.04080 4.15510 4.19681 4.25853 4.38857 4.46496 4.58452 4.75332 4.84737 4.88891 4.95858 5.00366 5.02014 5.10732 5.12502 5.20730 5.23141 5.28065 5.34522 5.41416 5.42664 5.48017 5.52234 5.54791 5.61344 5.62532 5.70545 5.72010 5.73604 5.78500 5.83728 5.90646 5.99783 6.00887 6.06074 6.11615 6.24610 6.27895 6.39088 6.59617 7.17956 7.23771 7.54065 7.96773 8.04755 8.60186 9.16888 9.53025 10.04776 10.74802 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.001931 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.400001 B =14497.440231 C =14787.021684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.113 4.113 4 H 0.095 0.905 5 C -0.144 4.144 6 C 0.519 3.481 7 O -0.545 6.545 8 N -0.609 5.609 9 C 0.114 3.886 10 C -0.118 4.118 11 C -0.089 4.089 12 C 0.003 3.997 13 N -0.441 5.441 14 C 0.009 3.991 15 C 0.444 3.556 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.024 3.976 27 C -0.103 4.103 28 C 0.106 3.894 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.069 0.931 51 H 0.088 0.912 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.806 -16.010 15.450 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.113 0.887 5 C -0.201 4.201 6 C 0.307 3.693 7 O -0.423 6.423 8 N -0.342 5.342 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.090 4.090 12 C -0.127 4.127 13 N -0.163 5.163 14 C -0.123 4.123 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.105 4.105 27 C -0.141 4.141 28 C -0.016 4.016 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.108 0.892 48 H 0.083 0.917 49 H 0.111 0.889 50 H 0.087 0.913 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.485 -16.148 14.882 25.770 hybrid contribution 1.540 0.459 -0.459 1.671 sum -11.946 -15.689 14.423 24.431 Atomic orbital electron populations 1.21835 0.95398 1.01919 1.01933 1.21355 0.95436 0.94152 1.03368 1.21385 0.91978 0.99355 1.00672 0.88674 1.21813 1.02191 1.00480 0.95649 1.20717 0.90174 0.82589 0.75788 1.90672 1.69002 1.31933 1.50648 1.48110 1.06957 1.11354 1.67790 1.21574 0.79393 1.02778 0.97094 1.21817 0.99930 0.96892 0.96980 1.21622 0.95846 0.93508 0.97990 1.23912 1.00318 0.93272 0.95154 1.68811 1.35904 1.08397 1.03177 1.22479 0.92927 0.98622 0.98244 1.19683 0.84860 0.84112 0.88371 1.90520 1.35868 1.62872 1.56986 1.41883 1.22999 1.40917 1.14435 1.19744 1.09533 1.23729 0.89740 0.87898 1.25265 0.95456 0.97336 0.99958 1.69619 1.12682 1.35641 1.36413 0.85802 0.78318 0.78497 0.81740 1.19231 1.20733 1.20775 1.23682 1.00448 0.89035 0.97343 1.21564 0.93606 1.02883 0.96093 1.21890 0.96223 0.86514 0.97022 0.92641 0.92486 0.92419 0.91540 0.91118 0.91999 0.91985 0.91141 0.89081 0.91438 0.91129 0.90579 0.91554 0.89996 0.92837 0.89219 0.77532 0.91938 0.89220 0.91692 0.88902 0.91275 0.89418 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.11 -0.81 4.73 -26.73 -0.13 -0.94 16 3 C -0.11 -0.85 1.87 -91.77 -0.17 -1.02 16 4 H 0.10 0.60 6.61 -51.93 -0.34 0.26 16 5 C -0.14 -0.86 8.51 37.16 0.32 -0.54 16 6 C 0.52 5.49 6.89 -10.98 -0.08 5.41 16 7 O -0.55 -7.74 15.49 5.56 0.09 -7.66 16 8 N -0.61 -5.68 2.94 -172.62 -0.51 -6.19 16 9 C 0.11 1.08 6.35 -3.65 -0.02 1.06 16 10 C -0.12 -1.15 5.30 -26.77 -0.14 -1.29 16 11 C -0.09 -0.97 0.83 -154.98 -0.13 -1.10 16 12 C 0.00 0.03 6.65 -7.28 -0.05 -0.02 16 13 N -0.44 -6.99 5.83 -245.98 -1.43 -8.43 16 14 C 0.01 0.16 5.31 -4.98 -0.03 0.14 16 15 C 0.44 10.48 7.62 -10.98 -0.08 10.40 16 16 O -0.58 -15.65 15.34 5.55 0.09 -15.57 16 17 N -0.57 -14.35 5.29 -10.96 -0.06 -14.40 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 21 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 22 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.02 0.35 5.87 -7.28 -0.04 0.31 16 27 C -0.10 -1.01 5.27 -26.77 -0.14 -1.15 16 28 C 0.11 0.82 5.29 -3.65 -0.02 0.80 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.29 6.71 -51.93 -0.35 -0.06 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 7.01 -51.93 -0.36 -0.01 16 36 H 0.07 0.32 6.89 -51.93 -0.36 -0.04 16 37 H 0.09 0.98 6.97 -51.93 -0.36 0.61 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 42 H 0.08 0.85 7.52 -51.93 -0.39 0.46 16 43 H 0.05 0.85 7.57 -51.93 -0.39 0.45 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 48 H 0.06 0.97 7.66 -51.93 -0.40 0.58 16 49 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.09 0.53 5.21 -51.93 -0.27 0.26 16 52 H 0.07 0.51 7.59 -51.93 -0.39 0.12 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -33.06 402.28 -9.57 -42.62 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.91 Total: 7.78 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.59 Total: 3.55 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -1.28 Total: -52.84 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.17 Total: -23.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.06 -9.57 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495970761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.918 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds