Wall clock time and date at job start Tue Mar 31 2020 20:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47268 * 2 1 4 4 H 1.09003 * 109.47374 * 305.00119 * 3 2 1 5 5 C 1.52998 * 109.47088 * 64.99869 * 3 2 1 6 6 C 1.50704 * 109.47418 * 184.99676 * 3 2 1 7 7 O 1.21274 * 119.99778 * 344.72118 * 6 3 2 8 8 N 1.34779 * 120.00210 * 164.71025 * 6 3 2 9 9 C 1.46890 * 120.46450 * 174.79351 * 8 6 3 10 10 C 1.53356 * 108.74330 * 124.39818 * 9 8 6 11 11 C 1.52571 * 109.12217 * 52.27932 * 10 9 8 12 12 C 1.52982 * 114.02839 * 75.40058 * 11 10 9 13 13 N 1.47578 * 87.80217 * 139.45861 * 12 11 10 14 14 C 1.46893 * 111.00204 * 221.69495 * 13 12 11 15 15 C 1.50698 * 109.47280 * 169.99851 * 14 13 12 16 16 O 1.21294 * 119.99916 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00389 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99845 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00270 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99610 * 179.72717 * 18 17 15 21 21 N 1.31415 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47131 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47358 * 119.99756 * 22 20 18 25 25 H 1.48505 * 109.47089 * 239.99813 * 22 20 18 26 26 C 1.47581 * 87.94605 * 333.43558 * 13 12 11 27 27 C 1.52563 * 113.40699 * 302.63856 * 11 10 9 28 28 C 1.46880 * 120.46060 * 354.82014 * 8 6 3 29 29 H 1.09005 * 109.46973 * 59.99563 * 1 2 3 30 30 H 1.08998 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47329 * 299.99940 * 1 2 3 32 32 H 1.08999 * 109.47329 * 240.00060 * 2 1 3 33 33 H 1.09001 * 109.47604 * 120.00064 * 2 1 3 34 34 H 1.09004 * 109.47184 * 53.62705 * 5 3 2 35 35 H 1.09003 * 109.47292 * 173.62347 * 5 3 2 36 36 H 1.08993 * 109.47310 * 293.62277 * 5 3 2 37 37 H 1.09003 * 109.58914 * 4.62425 * 9 8 6 38 38 H 1.09003 * 109.59149 * 244.17727 * 9 8 6 39 39 H 1.09002 * 109.52845 * 292.38812 * 10 9 8 40 40 H 1.08995 * 109.58720 * 172.20781 * 10 9 8 41 41 H 1.09002 * 113.49934 * 24.72836 * 12 11 10 42 42 H 1.09002 * 113.50120 * 254.19389 * 12 11 10 43 43 H 1.09003 * 109.46720 * 50.00358 * 14 13 12 44 44 H 1.09001 * 109.47642 * 290.00217 * 14 13 12 45 45 H 0.97001 * 119.99404 * 0.02562 * 17 15 14 46 46 H 0.96993 * 119.99755 * 180.02562 * 21 20 18 47 47 H 1.08997 * 113.49618 * 141.29794 * 26 13 12 48 48 H 1.09001 * 113.49371 * 271.83455 * 26 13 12 49 49 H 1.09004 * 109.52944 * 177.24045 * 27 11 10 50 50 H 1.08997 * 109.53399 * 297.45888 * 27 11 10 51 51 H 1.08997 * 109.59767 * 355.37024 * 28 8 6 52 52 H 1.09007 * 109.59295 * 115.81183 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1678 0.4243 0.0728 8 7 4.1896 2.5795 -0.4530 9 6 5.6578 2.6224 -0.4654 10 6 6.1255 3.0905 -1.8488 11 6 5.4097 4.3899 -2.2052 12 6 5.9439 5.6183 -1.4663 13 7 5.8025 6.3688 -2.7291 14 6 6.9575 7.2489 -2.9506 15 6 6.9018 7.8087 -4.3486 16 8 5.9893 7.5048 -5.0876 17 7 7.8659 8.6471 -4.7779 18 6 7.8148 9.1566 -6.0496 19 1 7.0023 8.8860 -6.7076 20 6 8.8057 10.0254 -6.4902 21 7 9.7915 10.3590 -5.6877 22 14 8.7358 10.7204 -8.2226 23 1 7.5345 10.1940 -8.9190 24 1 8.6620 12.2022 -8.1590 25 1 9.9556 10.3169 -8.9674 26 6 5.9671 5.0895 -3.4461 27 6 3.8890 4.2680 -2.1897 28 6 3.4372 3.7911 -0.8039 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9736 1.5259 2.1516 35 1 2.0932 3.1144 1.3575 36 1 0.5505 2.2267 1.3443 37 1 6.0543 1.6274 -0.2629 38 1 6.0095 3.3200 0.2948 39 1 5.8880 2.3283 -2.5909 40 1 7.2021 3.2602 -1.8325 41 1 6.9776 5.5121 -1.1373 42 1 5.2827 5.9710 -0.6747 43 1 7.8780 6.6790 -2.8238 44 1 6.9346 8.0669 -2.2305 45 1 8.5958 8.8898 -4.1869 46 1 10.4830 10.9657 -5.9952 47 1 5.3254 4.9967 -4.3223 48 1 7.0071 4.8394 -3.6556 49 1 3.4434 5.2394 -2.4039 50 1 3.5735 3.5469 -2.9438 51 1 2.3709 3.5661 -0.8246 52 1 3.6342 4.5700 -0.0672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495970761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:23 Heat of formation + Delta-G solvation = -69.914421 kcal Electronic energy + Delta-G solvation = -29907.255325 eV Core-core repulsion = 25906.291490 eV Total energy + Delta-G solvation = -4000.963835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23736 -40.96899 -39.75938 -37.45383 -36.42829 -35.94635 -33.59329 -33.18928 -32.29655 -30.60291 -29.71372 -27.39544 -26.80094 -26.31619 -25.03181 -24.45298 -23.28636 -21.98106 -20.96303 -20.24331 -19.89528 -19.02464 -18.02374 -17.81080 -17.07468 -16.79811 -16.64687 -16.47659 -16.35094 -15.79315 -15.59160 -15.56019 -15.26426 -15.07553 -14.66793 -14.38643 -14.25319 -14.01954 -13.76353 -13.57923 -13.49547 -13.32434 -13.14542 -12.99386 -12.87440 -12.86864 -12.58754 -12.48776 -12.44022 -12.42361 -12.15322 -12.13426 -11.74260 -11.61235 -11.53572 -11.49434 -11.36850 -11.19707 -10.60862 -10.33719 -10.02830 -9.74659 -9.57354 -8.48472 -5.97110 1.34902 1.40183 1.54295 1.62952 2.03350 2.03834 2.27521 2.89159 3.17413 3.22728 3.38837 3.51832 3.65121 3.83556 3.94510 4.00958 4.04924 4.11932 4.25426 4.27245 4.31230 4.38073 4.46306 4.52088 4.53532 4.54762 4.61358 4.63011 4.65573 4.71587 4.77456 4.81283 4.84271 4.91391 4.98589 5.02263 5.05940 5.11453 5.15366 5.21363 5.27561 5.35412 5.38118 5.39328 5.41129 5.49833 5.61811 5.91902 6.11212 6.43123 6.58726 7.11369 7.18588 7.54563 8.10563 8.69188 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.001931 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.400001 B =14497.440231 C =14787.021684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.109 4.109 4 H 0.113 0.887 5 C -0.140 4.140 6 C 0.512 3.488 7 O -0.589 6.589 8 N -0.607 5.607 9 C 0.116 3.884 10 C -0.110 4.110 11 C -0.070 4.070 12 C 0.012 3.988 13 N -0.465 5.465 14 C 0.022 3.978 15 C 0.441 3.559 16 O -0.619 6.619 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.015 3.985 27 C -0.102 4.102 28 C 0.111 3.889 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.083 0.917 50 H 0.062 0.938 51 H 0.110 0.890 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 -15.381 17.009 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.130 4.130 4 H 0.131 0.869 5 C -0.197 4.197 6 C 0.302 3.698 7 O -0.470 6.470 8 N -0.339 5.339 9 C -0.007 4.007 10 C -0.149 4.149 11 C -0.071 4.071 12 C -0.116 4.116 13 N -0.187 5.187 14 C -0.110 4.110 15 C 0.228 3.772 16 O -0.505 6.505 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.114 4.114 27 C -0.140 4.140 28 C -0.011 4.011 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.127 0.873 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.081 0.919 51 H 0.128 0.872 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.163 -15.498 16.467 26.682 hybrid contribution 1.751 0.230 -0.963 2.012 sum -12.412 -15.269 15.504 25.051 Atomic orbital electron populations 1.21803 0.93520 1.02366 1.02868 1.21326 0.96987 0.94204 1.01750 1.21440 0.89698 0.99513 1.02338 0.86931 1.21818 1.03504 1.00338 0.94068 1.21317 0.91427 0.82096 0.74927 1.90652 1.70112 1.33514 1.52721 1.48208 1.07039 1.11631 1.67022 1.21556 0.79676 1.02410 0.97056 1.21749 1.00375 0.95780 0.96973 1.21522 0.96621 0.93818 0.95162 1.23982 1.01832 0.91995 0.93770 1.68809 1.35313 1.08858 1.05766 1.22374 0.94762 0.99728 0.94092 1.20785 0.83335 0.82653 0.90420 1.90491 1.37228 1.63860 1.58916 1.41958 1.23762 1.41638 1.13920 1.19675 1.09867 1.25652 0.90996 0.90488 1.26034 0.94699 0.96953 1.03623 1.69674 1.12897 1.35713 1.37831 0.84877 0.78243 0.78118 0.77131 1.19901 1.19516 1.19584 1.23686 0.99834 0.89997 0.97877 1.21538 0.92646 1.02332 0.97496 1.22001 0.97192 0.86111 0.95801 0.91896 0.92404 0.91180 0.93388 0.92631 0.93000 0.91168 0.89160 0.90577 0.89550 0.92365 0.89696 0.89917 0.87918 0.90695 0.87252 0.77038 0.91302 0.92431 0.92186 0.89819 0.91940 0.87238 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 71.98 0.70 -0.73 16 2 C -0.10 -1.56 4.73 30.59 0.14 -1.41 16 3 C -0.11 -1.44 1.87 -11.54 -0.02 -1.46 16 4 H 0.11 1.10 6.61 -2.39 -0.02 1.08 16 5 C -0.14 -1.29 8.51 71.98 0.61 -0.68 16 6 C 0.51 10.33 6.89 87.66 0.60 10.94 16 7 O -0.59 -16.94 15.49 -3.01 -0.05 -16.99 16 8 N -0.61 -10.18 2.94 -818.45 -2.41 -12.58 16 9 C 0.12 1.99 6.35 86.42 0.55 2.54 16 10 C -0.11 -2.01 5.30 30.57 0.16 -1.85 16 11 C -0.07 -1.43 0.83 -52.48 -0.04 -1.48 16 12 C 0.01 0.25 6.65 83.69 0.56 0.81 16 13 N -0.47 -14.20 5.83 -932.13 -5.43 -19.64 16 14 C 0.02 0.75 5.31 85.56 0.45 1.20 16 15 C 0.44 21.08 7.62 87.66 0.67 21.75 16 16 O -0.62 -34.59 15.34 -3.07 -0.05 -34.64 16 17 N -0.58 -29.69 5.29 -306.98 -1.62 -31.31 16 18 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 22 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.02 0.45 5.87 83.69 0.49 0.95 16 27 C -0.10 -1.83 5.27 30.57 0.16 -1.67 16 28 C 0.11 1.37 5.29 86.43 0.46 1.83 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.51 6.71 -2.39 -0.02 0.49 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 34 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.07 0.55 7.01 -2.39 -0.02 0.53 16 36 H 0.09 0.50 6.89 -2.39 -0.02 0.48 16 37 H 0.08 1.59 6.97 -2.39 -0.02 1.58 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.08 1.44 7.69 -2.39 -0.02 1.42 16 42 H 0.10 1.69 7.52 -2.39 -0.02 1.67 16 43 H 0.08 2.22 7.57 -2.39 -0.02 2.21 16 44 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 46 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 48 H 0.06 1.81 7.66 -2.39 -0.02 1.79 16 49 H 0.08 1.71 7.95 -2.39 -0.02 1.69 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.11 0.92 5.21 -2.39 -0.01 0.91 16 52 H 0.09 0.88 7.59 -2.38 -0.02 0.87 16 Total: -1.00 -74.32 402.28 -0.29 -74.61 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.18 Total: 32.52 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 6.77 Total: 12.28 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -9.18 Total: -112.94 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.09 Total: -51.63 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.32 -0.29 -74.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495970761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.697 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds