Wall clock time and date at job start Tue Mar 31 2020 20:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47051 * 2 1 4 4 H 1.09004 * 109.47416 * 55.00390 * 3 2 1 5 5 C 1.53000 * 109.47244 * 295.00055 * 3 2 1 6 6 C 1.50697 * 109.47102 * 174.99959 * 3 2 1 7 7 O 1.21286 * 119.99739 * 34.64213 * 6 3 2 8 8 N 1.34776 * 120.00308 * 214.64356 * 6 3 2 9 9 C 1.46897 * 120.46476 * 174.53578 * 8 6 3 10 10 C 1.53350 * 108.74498 * 124.39561 * 9 8 6 11 11 C 1.52564 * 109.12650 * 52.27423 * 10 9 8 12 12 C 1.52992 * 114.02801 * 75.40469 * 11 10 9 13 13 N 1.47570 * 87.80418 * 139.46291 * 12 11 10 14 14 C 1.46897 * 110.99743 * 221.69780 * 13 12 11 15 15 C 1.50702 * 109.47274 * 169.99805 * 14 13 12 16 16 O 1.21298 * 119.99597 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00241 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99774 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00259 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99559 * 179.72358 * 18 17 15 21 21 N 1.31408 * 120.00056 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99784 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47140 * 60.00349 * 22 20 18 24 24 H 1.48502 * 109.47147 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47453 * 300.00197 * 22 20 18 26 26 C 1.47582 * 87.94274 * 333.43257 * 13 12 11 27 27 C 1.52564 * 113.40715 * 302.64517 * 11 10 9 28 28 C 1.46880 * 120.46266 * 354.55314 * 8 6 3 29 29 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47046 * 299.99666 * 1 2 3 31 31 H 1.08993 * 109.47043 * 59.99798 * 1 2 3 32 32 H 1.09002 * 109.46500 * 239.99860 * 2 1 3 33 33 H 1.09002 * 109.46491 * 120.00200 * 2 1 3 34 34 H 1.08994 * 109.47391 * 305.04803 * 5 3 2 35 35 H 1.08995 * 109.47336 * 65.05393 * 5 3 2 36 36 H 1.09001 * 109.46797 * 185.04934 * 5 3 2 37 37 H 1.09005 * 109.59014 * 4.61334 * 9 8 6 38 38 H 1.09005 * 109.71186 * 244.24665 * 9 8 6 39 39 H 1.08996 * 109.52650 * 292.38210 * 10 9 8 40 40 H 1.08994 * 109.58927 * 172.20439 * 10 9 8 41 41 H 1.08996 * 113.49677 * 24.72407 * 12 11 10 42 42 H 1.08998 * 113.49467 * 254.19842 * 12 11 10 43 43 H 1.08999 * 109.47265 * 50.00184 * 14 13 12 44 44 H 1.08998 * 109.47366 * 289.99711 * 14 13 12 45 45 H 0.97000 * 120.00324 * 0.02562 * 17 15 14 46 46 H 0.97001 * 119.99967 * 179.97438 * 21 20 18 47 47 H 1.09001 * 113.49678 * 141.30482 * 26 13 12 48 48 H 1.08997 * 113.50081 * 271.83291 * 26 13 12 49 49 H 1.08998 * 109.52560 * 177.24208 * 27 11 10 50 50 H 1.08998 * 109.52511 * 297.45088 * 27 11 10 51 51 H 1.09000 * 109.59334 * 355.37566 * 28 8 6 52 52 H 1.09005 * 109.58979 * 115.81583 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4442 0.1238 7 8 4.1943 0.5638 -0.3960 8 7 4.1602 2.4242 0.8123 9 6 5.6103 2.3726 1.0414 10 6 6.2395 3.6658 0.5090 11 6 5.5044 4.8620 1.1058 12 6 5.8542 5.1416 2.5687 13 7 5.8475 6.5794 2.2364 14 6 6.9674 7.2747 2.8848 15 6 7.0760 8.6737 2.3351 16 8 6.2974 9.0539 1.4863 17 7 8.0382 9.5023 2.7866 18 6 8.1373 10.7748 2.2861 19 1 7.4441 11.1133 1.5303 20 6 9.1258 11.6310 2.7557 21 7 9.9659 11.2209 3.6792 22 14 9.2604 13.3651 2.0743 23 1 7.9962 14.0992 2.3356 24 1 10.3883 14.0702 2.7346 25 1 9.5041 13.3043 0.6107 26 6 6.1883 6.2061 0.8499 27 6 4.0068 4.8601 0.8144 28 6 3.3934 3.5583 1.3443 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9941 1.5380 -2.1516 35 1 0.5492 2.2055 -1.3550 36 1 2.0741 3.1235 -1.3467 37 1 6.0332 1.5167 0.5153 38 1 5.8108 2.2811 2.1089 39 1 6.1554 3.6915 -0.5774 40 1 7.2908 3.7049 0.7941 41 1 6.8356 4.7674 2.8601 42 1 5.0679 4.8531 3.2663 43 1 7.8933 6.7343 2.6883 44 1 6.7938 7.3193 3.9599 45 1 8.6611 9.1982 3.4651 46 1 10.6562 11.8185 4.0068 47 1 5.6836 6.8145 0.0994 48 1 7.2606 6.1215 0.6736 49 1 3.5384 5.7112 1.3086 50 1 3.8450 4.9276 -0.2614 51 1 2.3562 3.4837 1.0178 52 1 3.4374 3.5504 2.4335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495970764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:26 Heat of formation + Delta-G solvation = -68.988321 kcal Electronic energy + Delta-G solvation = -29915.367118 eV Core-core repulsion = 25914.443441 eV Total energy + Delta-G solvation = -4000.923676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23621 -40.96357 -39.75527 -37.45933 -36.42107 -35.94139 -33.57820 -33.17962 -32.30294 -30.59029 -29.78341 -27.40137 -26.80815 -26.32698 -25.02397 -24.46986 -23.28541 -22.01297 -20.96097 -20.23906 -19.88982 -18.92045 -18.18266 -17.80611 -17.05552 -16.80708 -16.63309 -16.45895 -16.13212 -15.81468 -15.77425 -15.58306 -15.21049 -15.11274 -14.55684 -14.54158 -14.21494 -14.00357 -13.77918 -13.57900 -13.50025 -13.34587 -13.03354 -13.01440 -12.98622 -12.86880 -12.58415 -12.53549 -12.45123 -12.42838 -12.16055 -12.13920 -11.78002 -11.61498 -11.52408 -11.46732 -11.35202 -11.19558 -10.59483 -10.33350 -10.02759 -9.74754 -9.57807 -8.47775 -5.96602 1.38369 1.40245 1.51152 1.61263 2.02900 2.04275 2.27811 2.89309 3.17887 3.22890 3.38894 3.51046 3.64862 3.82672 3.94951 4.00170 4.05494 4.11118 4.25521 4.27150 4.32179 4.37309 4.46335 4.51713 4.52485 4.54715 4.60252 4.63378 4.65789 4.71570 4.73484 4.80885 4.83848 4.91278 4.97069 4.99755 5.05749 5.11346 5.14312 5.20060 5.27423 5.33042 5.37958 5.39968 5.41347 5.49288 5.61199 5.91956 6.11207 6.42510 6.59115 7.11480 7.18034 7.54872 8.10874 8.69352 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032293 B = 0.001932 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.863638 B =14487.768898 C =14812.057938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.108 4.108 4 H 0.117 0.883 5 C -0.140 4.140 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.608 5.608 9 C 0.115 3.885 10 C -0.110 4.110 11 C -0.071 4.071 12 C 0.012 3.988 13 N -0.465 5.465 14 C 0.022 3.978 15 C 0.440 3.560 16 O -0.619 6.619 17 N -0.575 5.575 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.016 3.984 27 C -0.100 4.100 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.396 0.604 46 H 0.278 0.722 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.083 0.917 50 H 0.063 0.937 51 H 0.110 0.890 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -21.910 -1.905 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.129 4.129 4 H 0.135 0.865 5 C -0.198 4.198 6 C 0.303 3.697 7 O -0.470 6.470 8 N -0.340 5.340 9 C -0.008 4.008 10 C -0.149 4.149 11 C -0.071 4.071 12 C -0.116 4.116 13 N -0.187 5.187 14 C -0.110 4.110 15 C 0.228 3.772 16 O -0.505 6.505 17 N -0.212 5.212 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.114 4.114 27 C -0.138 4.138 28 C -0.013 4.013 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.127 0.873 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.081 0.919 51 H 0.128 0.872 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.359 -21.554 -2.450 26.580 hybrid contribution 1.840 0.718 -0.164 1.982 sum -13.519 -20.837 -2.614 24.975 Atomic orbital electron populations 1.21800 0.93413 1.02451 1.02891 1.21356 0.97231 0.93857 1.01900 1.21469 0.89687 0.99696 1.02091 0.86521 1.21776 1.03414 0.99920 0.94649 1.21316 0.91556 0.80377 0.76426 1.90652 1.68496 1.39233 1.48575 1.48245 1.08620 1.22955 1.54158 1.21554 0.79827 0.97742 1.01632 1.21743 0.99684 0.93047 1.00377 1.21525 0.96518 0.93075 0.96018 1.23982 1.02743 0.87870 0.97021 1.68811 1.35391 1.10575 1.03950 1.22373 0.95303 0.92097 1.01184 1.20778 0.82623 0.88530 0.85301 1.90490 1.45119 1.78301 1.36583 1.41944 1.29188 1.12212 1.37871 1.19608 1.15311 0.89748 1.21720 0.90456 1.26030 0.95002 1.03718 0.96491 1.69662 1.18532 1.38735 1.29130 0.85000 0.78104 0.76973 0.78322 1.19729 1.19396 1.19787 1.23682 0.98965 0.95697 0.93017 1.21517 0.92597 0.98186 1.01537 1.21992 0.96230 0.83235 0.99794 0.92232 0.91475 0.91631 0.92823 0.92611 0.93354 0.88968 0.92186 0.90580 0.89556 0.92341 0.89702 0.89929 0.87955 0.90709 0.87285 0.77045 0.91291 0.92392 0.92194 0.89817 0.91854 0.87177 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 71.98 0.70 -0.60 16 2 C -0.11 -1.45 4.97 30.59 0.15 -1.30 16 3 C -0.11 -1.44 1.92 -11.54 -0.02 -1.46 16 4 H 0.12 0.98 6.15 -2.38 -0.01 0.96 16 5 C -0.14 -1.69 8.72 71.98 0.63 -1.06 16 6 C 0.51 10.39 6.68 87.66 0.59 10.98 16 7 O -0.59 -16.95 15.76 -3.05 -0.05 -17.00 16 8 N -0.61 -10.30 2.94 -818.46 -2.41 -12.71 16 9 C 0.11 1.99 6.35 86.42 0.55 2.54 16 10 C -0.11 -2.01 5.30 30.57 0.16 -1.84 16 11 C -0.07 -1.44 0.83 -52.48 -0.04 -1.48 16 12 C 0.01 0.24 6.65 83.69 0.56 0.80 16 13 N -0.47 -14.21 5.83 -932.25 -5.44 -19.64 16 14 C 0.02 0.75 5.31 85.56 0.45 1.20 16 15 C 0.44 21.05 7.62 87.66 0.67 21.72 16 16 O -0.62 -34.52 15.33 -3.09 -0.05 -34.57 16 17 N -0.57 -29.65 5.29 -306.98 -1.62 -31.28 16 18 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 19 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 22 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 C 0.02 0.46 5.86 83.68 0.49 0.95 16 27 C -0.10 -1.79 5.27 30.57 0.16 -1.63 16 28 C 0.11 1.37 6.07 86.42 0.52 1.90 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.49 6.68 -2.39 -0.02 0.48 16 32 H 0.05 0.95 8.02 -2.39 -0.02 0.93 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.71 6.82 -2.39 -0.02 0.70 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 1.60 6.97 -2.38 -0.02 1.58 16 38 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.08 1.45 7.69 -2.39 -0.02 1.43 16 42 H 0.10 1.70 7.52 -2.39 -0.02 1.68 16 43 H 0.08 2.22 7.57 -2.39 -0.02 2.20 16 44 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.40 19.35 7.90 -92.71 -0.73 18.61 16 46 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 47 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 48 H 0.06 1.81 7.66 -2.39 -0.02 1.79 16 49 H 0.08 1.71 7.95 -2.39 -0.02 1.69 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.11 0.93 5.47 -2.39 -0.01 0.92 16 52 H 0.09 0.90 7.59 -2.38 -0.02 0.88 16 Total: -1.00 -73.99 404.40 -0.23 -74.22 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.18 Total: 33.04 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.84 Total: 12.22 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -9.18 Total: -113.00 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.10 Total: -51.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -73.99 -0.23 -74.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495970764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.233 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds