Wall clock time and date at job start Tue Mar 31 2020 19:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46815 * 2 1 4 4 H 1.08996 * 110.54346 * 56.15897 * 3 2 1 5 5 C 1.54272 * 110.48746 * 293.54478 * 3 2 1 6 6 C 1.53872 * 106.59910 * 217.71141 * 5 3 2 7 7 C 1.54258 * 106.60182 * 0.02562 * 6 5 3 8 8 C 1.54890 * 104.19729 * 23.60652 * 7 6 5 9 9 H 1.08996 * 110.75303 * 80.37198 * 8 7 6 10 10 C 1.50695 * 110.75827 * 203.74478 * 8 7 6 11 11 O 1.21283 * 120.00216 * 113.33073 * 10 8 7 12 12 N 1.34782 * 120.00196 * 293.32682 * 10 8 7 13 13 C 1.46494 * 120.00217 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47211 * 179.97438 * 13 12 10 15 15 C 1.31004 * 119.99704 * 127.15935 * 14 13 12 16 16 C 1.50701 * 120.00251 * 7.56320 * 15 14 13 17 17 N 1.46897 * 109.47275 * 127.00442 * 16 15 14 18 18 C 1.46907 * 111.00027 * 180.02562 * 17 16 15 19 19 C 1.50692 * 109.46978 * 180.02562 * 18 17 16 20 20 O 1.21297 * 120.00148 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99843 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99897 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00343 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99928 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00045 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00062 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47611 * 89.99514 * 26 24 22 28 28 H 1.48498 * 109.47046 * 210.00122 * 26 24 22 29 29 H 1.48505 * 109.46902 * 329.99835 * 26 24 22 30 30 H 1.08997 * 109.47460 * 60.00057 * 1 2 3 31 31 H 1.08998 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46958 * 299.99847 * 1 2 3 33 33 H 1.08998 * 109.47581 * 240.00493 * 2 1 3 34 34 H 1.08997 * 109.47460 * 119.99943 * 2 1 3 35 35 H 1.08995 * 110.03427 * 337.00132 * 5 3 2 36 36 H 1.09000 * 110.02638 * 98.42988 * 5 3 2 37 37 H 1.09002 * 110.03127 * 119.28979 * 6 5 3 38 38 H 1.09001 * 110.03171 * 240.66540 * 6 5 3 39 39 H 1.08994 * 110.48788 * 142.28727 * 7 6 5 40 40 H 1.09006 * 110.48442 * 264.79764 * 7 6 5 41 41 H 0.97006 * 119.99441 * 0.02562 * 12 10 8 42 42 H 1.09001 * 109.47853 * 300.00746 * 13 12 10 43 43 H 1.09000 * 109.47030 * 60.00489 * 13 12 10 44 44 H 1.07990 * 120.00181 * 307.16259 * 14 13 12 45 45 H 1.07995 * 119.99929 * 187.56339 * 15 14 13 46 46 H 1.09002 * 109.47206 * 247.01126 * 16 15 14 47 47 H 1.09001 * 109.46995 * 7.00383 * 16 15 14 48 48 H 1.00899 * 110.99829 * 56.04994 * 17 16 15 49 49 H 1.09002 * 109.46529 * 299.99955 * 18 17 16 50 50 H 1.08999 * 109.47173 * 59.99935 * 18 17 16 51 51 H 0.97002 * 120.00206 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99757 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6315 1.9926 0.8477 5 6 1.6756 2.1440 -1.3248 6 6 2.8694 3.0442 -1.6883 7 6 3.9178 2.8580 -0.5722 8 6 3.5886 1.4696 0.0304 9 1 4.0014 0.6725 -0.5878 10 6 4.0965 1.3675 1.4455 11 8 3.3123 1.2795 2.3665 12 7 5.4224 1.3739 1.6877 13 6 5.9162 1.2752 3.0634 14 6 7.4229 1.3038 3.0595 15 6 8.0636 2.1639 3.8118 16 6 7.3063 3.0066 4.8056 17 7 7.9157 2.8628 6.1345 18 6 7.2016 3.6717 7.1314 19 6 7.8542 3.4995 8.4787 20 8 8.8191 2.7740 8.5970 21 7 7.3659 4.1517 9.5523 22 6 7.9593 3.9946 10.7782 23 1 8.8184 3.3487 10.8835 24 6 7.4555 4.6666 11.8852 25 7 8.0246 4.5165 13.0601 26 14 5.9692 5.7834 11.7032 27 1 4.7291 4.9976 11.9265 28 1 6.0478 6.8788 12.7027 29 1 5.9491 6.3617 10.3355 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5147 1.4030 -2.1078 36 1 0.7785 2.7489 -1.1925 37 1 3.2879 2.7401 -2.6478 38 1 2.5515 4.0859 -1.7334 39 1 4.9246 2.8636 -0.9897 40 1 3.8143 3.6379 0.1824 41 1 6.0496 1.4446 0.9511 42 1 5.5379 2.1149 3.6465 43 1 5.5721 0.3408 3.5067 44 1 7.9745 0.6153 2.4366 45 1 9.1345 2.2691 3.7198 46 1 7.3446 4.0520 4.4994 47 1 6.2680 2.6773 4.8445 48 1 8.8959 3.1007 6.1103 49 1 7.2389 4.7217 6.8415 50 1 6.1626 3.3466 7.1863 51 1 6.5945 4.7322 9.4577 52 1 7.6727 4.9854 13.8329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497671345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:17 Heat of formation + Delta-G solvation = -70.224540 kcal Electronic energy + Delta-G solvation = -28143.852081 eV Core-core repulsion = 24142.874798 eV Total energy + Delta-G solvation = -4000.977283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55971 -38.56901 -38.18741 -36.96794 -35.11305 -33.96307 -33.61348 -32.83760 -31.64019 -30.01692 -28.06597 -27.93901 -26.14810 -24.70210 -23.29455 -23.06972 -21.99858 -20.43601 -20.01408 -19.52941 -19.05398 -18.27052 -17.45925 -16.69814 -16.07950 -16.00774 -15.72337 -15.42954 -15.10743 -14.83664 -14.74426 -14.58989 -14.25617 -13.81867 -13.73279 -13.51630 -13.41621 -13.29756 -12.99426 -12.83614 -12.61384 -12.30172 -12.27311 -12.26604 -11.82285 -11.71315 -11.68447 -11.58022 -11.14699 -11.14161 -10.98561 -10.86785 -10.80015 -10.78861 -10.58201 -10.10463 -9.96453 -9.59676 -9.55967 -9.15657 -8.58518 -8.18133 -8.12066 -6.29976 -3.81383 1.77115 2.38920 3.03852 3.06194 3.08895 3.16522 3.74966 3.97790 4.10406 4.11240 4.21615 4.25732 4.50314 4.69388 4.74785 4.81123 4.83078 4.89513 4.91347 4.96567 5.04859 5.10671 5.18298 5.20850 5.22888 5.26483 5.29353 5.39170 5.49372 5.50346 5.55599 5.57844 5.64655 5.65145 5.69334 5.75151 5.78643 5.81046 5.85263 5.94427 5.99714 6.07219 6.14703 6.31615 6.54584 7.05077 7.22411 7.54570 7.59467 7.97433 8.15518 8.60891 8.96001 9.43554 9.83671 10.83098 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.001701 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.170105 B =16454.509551 C =17418.667112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.072 4.072 4 H 0.088 0.912 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.101 0.899 10 C 0.518 3.482 11 O -0.535 6.535 12 N -0.726 5.726 13 C 0.139 3.861 14 C -0.182 4.182 15 C -0.112 4.112 16 C 0.070 3.930 17 N -0.663 5.663 18 C 0.047 3.953 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.400 0.600 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.037 0.963 47 H 0.086 0.914 48 H 0.351 0.649 49 H 0.045 0.955 50 H 0.088 0.912 51 H 0.371 0.629 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 -3.194 -34.634 36.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.091 4.091 4 H 0.107 0.893 5 C -0.159 4.159 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.134 4.134 9 H 0.119 0.881 10 C 0.304 3.696 11 O -0.411 6.411 12 N -0.378 5.378 13 C 0.017 3.983 14 C -0.201 4.201 15 C -0.132 4.132 16 C -0.059 4.059 17 N -0.295 5.295 18 C -0.086 4.086 19 C 0.236 3.764 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.195 1.195 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.233 0.767 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.055 0.945 47 H 0.104 0.896 48 H 0.171 0.829 49 H 0.063 0.937 50 H 0.106 0.894 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.694 -4.269 -33.462 35.703 hybrid contribution -0.410 1.814 -0.476 1.920 sum -12.104 -2.454 -33.938 36.115 Atomic orbital electron populations 1.21754 0.95707 1.01503 1.01848 1.21539 0.96153 0.95731 1.01891 1.21894 0.92011 0.96834 0.98379 0.89342 1.22245 0.98126 0.98520 0.96978 1.22115 0.95571 1.00190 0.98246 1.22324 0.99417 0.95224 0.98141 1.22398 0.97977 0.99773 0.93236 0.88086 1.20557 0.82023 0.75787 0.91254 1.90725 1.55511 1.48742 1.46104 1.46041 1.07051 1.75401 1.09303 1.20502 0.91597 1.03168 0.83058 1.22675 0.94664 0.99546 1.03203 1.22829 1.00126 0.95339 0.94869 1.21285 0.99118 0.97228 0.88235 1.60079 1.07357 1.58747 1.03355 1.21730 0.99158 0.95506 0.92166 1.19679 0.87033 0.84658 0.85050 1.90566 1.28594 1.40381 1.85102 1.42204 1.29533 1.42589 1.08649 1.19437 1.14090 1.27506 0.82362 0.86270 1.25042 0.98126 0.97948 0.95051 1.69624 1.40533 1.42614 0.99343 0.86668 0.83287 0.81113 0.78296 1.19546 1.20186 1.19539 0.92796 0.92916 0.92571 0.92293 0.91576 0.91525 0.91585 0.91587 0.91536 0.90985 0.91034 0.76661 0.90093 0.90719 0.86414 0.86516 0.94489 0.89639 0.82934 0.93690 0.89351 0.79663 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.76 37.16 0.36 -0.63 16 2 C -0.12 -0.83 5.31 -26.73 -0.14 -0.97 16 3 C -0.07 -0.52 1.97 -88.94 -0.18 -0.70 16 4 H 0.09 0.84 7.44 -51.93 -0.39 0.46 16 5 C -0.12 -0.65 5.51 -25.61 -0.14 -0.79 16 6 C -0.12 -0.58 6.80 -25.62 -0.17 -0.75 16 7 C -0.11 -0.59 6.26 -25.08 -0.16 -0.75 16 8 C -0.11 -0.73 2.71 -89.77 -0.24 -0.98 16 9 H 0.10 0.50 8.06 -51.93 -0.42 0.09 16 10 C 0.52 4.95 7.13 -10.99 -0.08 4.87 16 11 O -0.53 -7.41 15.73 5.55 0.09 -7.32 16 12 N -0.73 -5.63 5.55 -61.48 -0.34 -5.97 16 13 C 0.14 1.33 5.76 -5.20 -0.03 1.30 16 14 C -0.18 -1.54 9.63 -36.03 -0.35 -1.89 16 15 C -0.11 -1.09 9.77 -36.03 -0.35 -1.45 16 16 C 0.07 0.81 5.77 -4.98 -0.03 0.79 16 17 N -0.66 -10.35 6.11 -116.34 -0.71 -11.06 16 18 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 19 C 0.45 10.40 7.82 -10.99 -0.09 10.31 16 20 O -0.56 -15.38 15.78 5.54 0.09 -15.29 16 21 N -0.59 -14.30 5.09 -10.96 -0.06 -14.36 16 22 C -0.31 -8.76 10.16 -14.93 -0.15 -8.91 16 23 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 24 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 25 N -0.88 -25.98 13.96 55.50 0.77 -25.20 16 26 Si 0.88 19.63 27.74 -169.99 -4.71 14.92 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 29 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 30 H 0.05 0.30 7.48 -51.93 -0.39 -0.09 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.32 7.77 -51.93 -0.40 -0.09 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 41 H 0.40 1.98 8.46 -40.82 -0.35 1.63 16 42 H 0.08 0.88 5.30 -51.93 -0.28 0.60 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 1.01 5.29 -51.93 -0.27 0.73 16 48 H 0.35 5.55 8.42 -39.29 -0.33 5.22 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 52 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 418.18 15.07 6.30 6.30 Total: -1.00 -34.86 418.18 -9.39 -44.25 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -8.95 Total: 12.46 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.87 Total: 1.27 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.33 Total: -56.59 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.61 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.86 -9.39 -44.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497671345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.975 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds