Wall clock time and date at job start Tue Mar 31 2020 19:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46815 * 2 1 4 4 H 1.08996 * 110.54346 * 56.15897 * 3 2 1 5 5 C 1.54272 * 110.48746 * 293.54478 * 3 2 1 6 6 C 1.53872 * 106.59910 * 217.71141 * 5 3 2 7 7 C 1.54258 * 106.60182 * 0.02562 * 6 5 3 8 8 C 1.54890 * 104.19729 * 23.60652 * 7 6 5 9 9 H 1.08996 * 110.75303 * 80.37198 * 8 7 6 10 10 C 1.50695 * 110.75827 * 203.74478 * 8 7 6 11 11 O 1.21283 * 120.00216 * 113.33073 * 10 8 7 12 12 N 1.34782 * 120.00196 * 293.32682 * 10 8 7 13 13 C 1.46494 * 120.00217 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47211 * 179.97438 * 13 12 10 15 15 C 1.31004 * 119.99704 * 127.15935 * 14 13 12 16 16 C 1.50701 * 120.00251 * 7.56320 * 15 14 13 17 17 N 1.46897 * 109.47275 * 127.00442 * 16 15 14 18 18 C 1.46907 * 111.00027 * 180.02562 * 17 16 15 19 19 C 1.50692 * 109.46978 * 180.02562 * 18 17 16 20 20 O 1.21297 * 120.00148 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99843 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99897 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00343 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99928 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00045 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00062 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47611 * 89.99514 * 26 24 22 28 28 H 1.48498 * 109.47046 * 210.00122 * 26 24 22 29 29 H 1.48505 * 109.46902 * 329.99835 * 26 24 22 30 30 H 1.08997 * 109.47460 * 60.00057 * 1 2 3 31 31 H 1.08998 * 109.46662 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46958 * 299.99847 * 1 2 3 33 33 H 1.08998 * 109.47581 * 240.00493 * 2 1 3 34 34 H 1.08997 * 109.47460 * 119.99943 * 2 1 3 35 35 H 1.08995 * 110.03427 * 337.00132 * 5 3 2 36 36 H 1.09000 * 110.02638 * 98.42988 * 5 3 2 37 37 H 1.09002 * 110.03127 * 119.28979 * 6 5 3 38 38 H 1.09001 * 110.03171 * 240.66540 * 6 5 3 39 39 H 1.08994 * 110.48788 * 142.28727 * 7 6 5 40 40 H 1.09006 * 110.48442 * 264.79764 * 7 6 5 41 41 H 0.97006 * 119.99441 * 0.02562 * 12 10 8 42 42 H 1.09001 * 109.47853 * 300.00746 * 13 12 10 43 43 H 1.09000 * 109.47030 * 60.00489 * 13 12 10 44 44 H 1.07990 * 120.00181 * 307.16259 * 14 13 12 45 45 H 1.07995 * 119.99929 * 187.56339 * 15 14 13 46 46 H 1.09002 * 109.47206 * 247.01126 * 16 15 14 47 47 H 1.09001 * 109.46995 * 7.00383 * 16 15 14 48 48 H 1.00899 * 110.99829 * 56.04994 * 17 16 15 49 49 H 1.09002 * 109.46529 * 299.99955 * 18 17 16 50 50 H 1.08999 * 109.47173 * 59.99935 * 18 17 16 51 51 H 0.97002 * 120.00206 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99757 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6315 1.9926 0.8477 5 6 1.6756 2.1440 -1.3248 6 6 2.8694 3.0442 -1.6883 7 6 3.9178 2.8580 -0.5722 8 6 3.5886 1.4696 0.0304 9 1 4.0014 0.6725 -0.5878 10 6 4.0965 1.3675 1.4455 11 8 3.3123 1.2795 2.3665 12 7 5.4224 1.3739 1.6877 13 6 5.9162 1.2752 3.0634 14 6 7.4229 1.3038 3.0595 15 6 8.0636 2.1639 3.8118 16 6 7.3063 3.0066 4.8056 17 7 7.9157 2.8628 6.1345 18 6 7.2016 3.6717 7.1314 19 6 7.8542 3.4995 8.4787 20 8 8.8191 2.7740 8.5970 21 7 7.3659 4.1517 9.5523 22 6 7.9593 3.9946 10.7782 23 1 8.8184 3.3487 10.8835 24 6 7.4555 4.6666 11.8852 25 7 8.0246 4.5165 13.0601 26 14 5.9692 5.7834 11.7032 27 1 4.7291 4.9976 11.9265 28 1 6.0478 6.8788 12.7027 29 1 5.9491 6.3617 10.3355 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5147 1.4030 -2.1078 36 1 0.7785 2.7489 -1.1925 37 1 3.2879 2.7401 -2.6478 38 1 2.5515 4.0859 -1.7334 39 1 4.9246 2.8636 -0.9897 40 1 3.8143 3.6379 0.1824 41 1 6.0496 1.4446 0.9511 42 1 5.5379 2.1149 3.6465 43 1 5.5721 0.3408 3.5067 44 1 7.9745 0.6153 2.4366 45 1 9.1345 2.2691 3.7198 46 1 7.3446 4.0520 4.4994 47 1 6.2680 2.6773 4.8445 48 1 8.8959 3.1007 6.1103 49 1 7.2389 4.7217 6.8415 50 1 6.1626 3.3466 7.1863 51 1 6.5945 4.7322 9.4577 52 1 7.6727 4.9854 13.8329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497671345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:16 Heat of formation + Delta-G solvation = -96.536209 kcal Electronic energy + Delta-G solvation = -28144.993041 eV Core-core repulsion = 24142.874798 eV Total energy + Delta-G solvation = -4002.118242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.23879 -40.34267 -38.85529 -37.92684 -36.28299 -35.79450 -34.25528 -33.81025 -33.61997 -30.59907 -29.28758 -28.44479 -27.24332 -26.13438 -24.41071 -23.85284 -22.55646 -21.36184 -21.06469 -20.56389 -20.39732 -19.68042 -18.26580 -17.76245 -17.30626 -17.03050 -16.70206 -16.59097 -16.30790 -15.86274 -15.61786 -15.41897 -15.30689 -15.07946 -14.90709 -14.48289 -14.30978 -14.26415 -14.10235 -13.95081 -13.77814 -13.52562 -13.29658 -13.01682 -12.93972 -12.77473 -12.75485 -12.43007 -12.16251 -12.01141 -11.99274 -11.69885 -11.61381 -11.53832 -11.45657 -11.32215 -11.23293 -10.87216 -10.47920 -10.35578 -10.26869 -9.95226 -9.28961 -8.43167 -6.04189 1.03448 1.28736 1.34423 1.42893 1.65814 1.92285 2.21268 2.38319 2.77087 3.12866 3.47723 3.51077 3.64138 3.71448 3.79022 4.04583 4.10973 4.16050 4.26396 4.30528 4.31838 4.38855 4.45165 4.48522 4.48716 4.50672 4.57881 4.67506 4.70785 4.72576 4.78183 4.83796 4.94957 4.97538 5.05056 5.15210 5.21588 5.25785 5.32076 5.37961 5.42866 5.48557 5.50096 5.57660 5.58369 5.80045 5.88203 6.00231 6.35726 6.57445 6.59743 6.85490 7.29444 7.37033 7.93082 8.74357 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.001701 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.170105 B =16454.509551 C =17418.667112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.075 4.075 4 H 0.056 0.944 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.110 4.110 8 C -0.107 4.107 9 H 0.125 0.875 10 C 0.513 3.487 11 O -0.585 6.585 12 N -0.712 5.712 13 C 0.139 3.861 14 C -0.162 4.162 15 C -0.127 4.127 16 C 0.073 3.927 17 N -0.683 5.683 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.613 6.613 21 N -0.590 5.590 22 C -0.330 4.330 23 H 0.056 0.944 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.964 3.036 27 H -0.259 1.259 28 H -0.273 1.273 29 H -0.232 1.232 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.416 0.584 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.142 0.858 45 H 0.128 0.872 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.347 0.653 49 H 0.079 0.921 50 H 0.109 0.891 51 H 0.390 0.610 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 -1.832 -38.511 40.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.094 4.094 4 H 0.075 0.925 5 C -0.155 4.155 6 C -0.159 4.159 7 C -0.147 4.147 8 C -0.128 4.128 9 H 0.143 0.857 10 C 0.301 3.699 11 O -0.465 6.465 12 N -0.364 5.364 13 C 0.016 3.984 14 C -0.182 4.182 15 C -0.146 4.146 16 C -0.055 4.055 17 N -0.315 5.315 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.074 0.926 24 C -0.213 4.213 25 N -0.573 5.573 26 Si 0.784 3.216 27 H -0.183 1.183 28 H -0.198 1.198 29 H -0.155 1.155 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.160 0.840 45 H 0.146 0.854 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.166 0.834 49 H 0.097 0.903 50 H 0.127 0.873 51 H 0.225 0.775 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.177 -2.901 -37.403 39.763 hybrid contribution 0.139 1.267 0.725 1.467 sum -13.038 -1.634 -36.678 38.961 Atomic orbital electron populations 1.21750 0.95470 1.01759 1.01748 1.21521 0.96431 0.95712 1.01455 1.21851 0.92628 0.96573 0.98346 0.92540 1.22221 0.98472 0.98772 0.95999 1.22123 0.94942 1.00114 0.98681 1.22335 1.00978 0.93553 0.97874 1.22440 0.97356 1.01525 0.91450 0.85719 1.21163 0.82040 0.74636 0.92073 1.90706 1.56822 1.51131 1.47858 1.45906 1.06947 1.74332 1.09206 1.20383 0.92477 1.01735 0.83818 1.22759 0.93751 0.98898 1.02751 1.22835 1.00664 0.95980 0.95164 1.21305 0.98892 0.98663 0.86628 1.60071 1.07320 1.59019 1.05139 1.21639 0.99234 0.97887 0.88408 1.20938 0.86009 0.82542 0.86906 1.90541 1.30863 1.42087 1.86295 1.42035 1.30151 1.43541 1.07473 1.19021 1.13649 1.28089 0.85201 0.92591 1.26113 1.01999 0.99384 0.93805 1.69802 1.42876 1.43991 1.00637 0.85373 0.77613 0.78243 0.80350 1.18326 1.19795 1.15491 0.91436 0.92477 0.94112 0.90425 0.94130 0.90244 0.91896 0.89847 0.91447 0.88662 0.92670 0.74653 0.91418 0.92462 0.84025 0.85436 0.92930 0.89903 0.83366 0.90315 0.87272 0.77479 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.76 71.98 0.70 -1.23 16 2 C -0.11 -1.57 5.31 30.60 0.16 -1.41 16 3 C -0.07 -1.04 1.97 -9.71 -0.02 -1.06 16 4 H 0.06 1.15 7.44 -2.39 -0.02 1.13 16 5 C -0.12 -1.03 5.51 31.32 0.17 -0.86 16 6 C -0.12 -0.80 6.80 31.31 0.21 -0.59 16 7 C -0.11 -0.88 6.26 31.67 0.20 -0.68 16 8 C -0.11 -1.21 2.71 -10.24 -0.03 -1.24 16 9 H 0.12 0.85 8.06 -2.39 -0.02 0.83 16 10 C 0.51 9.51 7.13 87.65 0.62 10.13 16 11 O -0.59 -16.81 15.73 -3.04 -0.05 -16.85 16 12 N -0.71 -9.90 5.55 -466.80 -2.59 -12.49 16 13 C 0.14 2.51 5.76 85.63 0.49 3.01 16 14 C -0.16 -2.38 9.63 25.64 0.25 -2.13 16 15 C -0.13 -2.21 9.77 25.64 0.25 -1.96 16 16 C 0.07 1.55 5.77 85.56 0.49 2.04 16 17 N -0.68 -20.43 6.11 -521.98 -3.19 -23.62 16 18 C 0.06 1.92 6.17 85.55 0.53 2.45 16 19 C 0.45 20.76 7.82 87.65 0.69 21.44 16 20 O -0.61 -34.68 15.78 -3.08 -0.05 -34.73 16 21 N -0.59 -28.52 5.09 -306.99 -1.56 -30.08 16 22 C -0.33 -19.72 10.16 84.04 0.85 -18.86 16 23 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.93 -56.85 13.96 21.66 0.30 -56.55 16 26 Si 0.96 39.54 27.74 68.60 1.90 41.44 16 27 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 30 H 0.07 0.67 7.48 -2.39 -0.02 0.66 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.77 8.05 -2.39 -0.02 0.75 16 34 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.52 7.77 -2.39 -0.02 0.50 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 0.33 8.14 -2.39 -0.02 0.32 16 40 H 0.05 0.64 8.04 -2.38 -0.02 0.62 16 41 H 0.42 2.92 8.46 -92.70 -0.78 2.14 16 42 H 0.07 1.43 5.30 -2.39 -0.01 1.42 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.14 1.44 8.06 -2.92 -0.02 1.42 16 45 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.08 1.82 5.29 -2.39 -0.01 1.81 16 48 H 0.35 10.75 8.42 -89.69 -0.76 9.99 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 51 H 0.39 15.64 5.76 -92.71 -0.53 15.10 16 52 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -83.04 418.18 -0.39 -83.43 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: -1.20 Total: 40.71 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.05 Total: 8.74 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -7.04 Total: -122.75 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.10 Total: -51.58 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.90 Total: 41.44 kcal Total: -83.04 -0.39 -83.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497671345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.103 kcal (2) G-P(sol) polarization free energy of solvation -83.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds