Wall clock time and date at job start Tue Mar 31 2020 19:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 H 1.08994 * 110.53836 * 52.39368 * 3 2 1 5 5 C 1.54270 * 110.48685 * 289.77363 * 3 2 1 6 6 C 1.53873 * 106.59893 * 217.71422 * 5 3 2 7 7 C 1.54268 * 106.59931 * 0.02562 * 6 5 3 8 8 C 1.54890 * 110.48098 * 175.00311 * 3 2 1 9 9 H 1.08992 * 110.76001 * 38.12492 * 8 3 2 10 10 C 1.50698 * 110.75620 * 274.93497 * 8 3 2 11 11 O 1.21283 * 120.00083 * 0.02562 * 10 8 3 12 12 N 1.34778 * 120.00032 * 180.02562 * 10 8 3 13 13 C 1.46505 * 119.99906 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.47075 * 179.97438 * 13 12 10 15 15 C 1.30997 * 120.00153 * 125.00198 * 14 13 12 16 16 C 1.50699 * 120.00153 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.47140 * 125.00166 * 16 15 14 18 18 C 1.46898 * 110.99888 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46661 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00125 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99549 * 179.97438 * 19 18 17 22 22 C 1.37103 * 120.00062 * 179.97438 * 21 19 18 23 23 H 1.08007 * 119.99698 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00207 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00271 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00123 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46979 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47480 * 120.00092 * 26 24 22 29 29 H 1.48497 * 109.47080 * 240.00247 * 26 24 22 30 30 H 1.09001 * 109.47453 * 60.00009 * 1 2 3 31 31 H 1.09002 * 109.47367 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47181 * 300.00041 * 1 2 3 33 33 H 1.09003 * 109.46719 * 240.00154 * 2 1 3 34 34 H 1.08989 * 109.47194 * 120.00296 * 2 1 3 35 35 H 1.08996 * 110.03017 * 337.00287 * 5 3 2 36 36 H 1.08996 * 110.02715 * 98.42872 * 5 3 2 37 37 H 1.08997 * 110.02826 * 119.28767 * 6 5 3 38 38 H 1.08995 * 110.03206 * 240.66851 * 6 5 3 39 39 H 1.09006 * 110.48511 * 264.93616 * 7 6 5 40 40 H 1.08992 * 110.48489 * 142.28838 * 7 6 5 41 41 H 0.97000 * 120.00323 * 0.02562 * 12 10 8 42 42 H 1.08999 * 109.46632 * 60.00429 * 13 12 10 43 43 H 1.08995 * 109.46994 * 300.00381 * 13 12 10 44 44 H 1.08003 * 119.99616 * 305.00542 * 14 13 12 45 45 H 1.08002 * 119.99635 * 359.97438 * 15 14 13 46 46 H 1.09000 * 109.47247 * 5.00188 * 16 15 14 47 47 H 1.09001 * 109.47358 * 244.99614 * 16 15 14 48 48 H 1.00902 * 110.99923 * 303.95945 * 17 16 15 49 49 H 1.08995 * 109.47296 * 299.99911 * 18 17 16 50 50 H 1.08997 * 109.47334 * 60.00212 * 18 17 16 51 51 H 0.97003 * 120.00664 * 0.02562 * 21 19 18 52 52 H 0.97005 * 120.00698 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5802 2.0107 0.8086 5 6 1.7590 2.1146 -1.3599 6 6 2.9737 3.0074 -1.6684 7 6 3.9507 2.8462 -0.4855 8 6 3.5834 1.4718 0.1264 9 1 4.0332 0.6595 -0.4445 10 6 4.0023 1.4014 1.5723 11 8 3.1622 1.3329 2.4444 12 7 5.3105 1.4147 1.8963 13 6 5.7177 1.3469 3.3020 14 6 7.2217 1.3771 3.3913 15 6 7.8160 2.2812 4.1297 16 6 9.3200 2.3118 4.2186 17 7 9.8055 3.6476 3.8471 18 6 11.2710 3.7147 3.9218 19 6 11.7309 5.0969 3.5354 20 8 10.9178 5.9426 3.2276 21 7 13.0457 5.3932 3.5318 22 6 13.4641 6.6504 3.1798 23 1 12.7401 7.4035 2.9057 24 6 14.8195 6.9560 3.1766 25 7 15.7004 6.0399 3.5106 26 14 15.3896 8.6692 2.6976 27 1 14.2103 9.5088 2.3665 28 1 16.1299 9.2796 3.8310 29 1 16.2819 8.5810 1.5139 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6464 1.3564 -2.1348 36 1 0.8559 2.7215 -1.2968 37 1 3.4506 2.6824 -2.5931 38 1 2.6599 4.0475 -1.7559 39 1 3.7996 3.6410 0.2451 40 1 4.9815 2.8434 -0.8398 41 1 5.9824 1.4698 1.1989 42 1 5.3464 0.4221 3.7435 43 1 5.3040 2.1988 3.8415 44 1 7.8096 0.6532 2.8464 45 1 7.2280 3.0053 4.6742 46 1 9.7394 1.5707 3.5382 47 1 9.6285 2.0840 5.2389 48 1 9.4781 3.9090 2.9292 49 1 11.5934 3.4964 4.9399 50 1 11.7035 2.9834 3.2391 51 1 13.6960 4.7167 3.7776 52 1 16.6467 6.2533 3.5088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497671347.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:22 Heat of formation + Delta-G solvation = -109.117349 kcal Electronic energy + Delta-G solvation = -27746.530445 eV Core-core repulsion = 23743.866644 eV Total energy + Delta-G solvation = -4002.663801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24583 -40.16171 -38.78211 -37.72876 -36.32458 -35.81340 -34.24446 -33.69481 -33.22857 -30.74272 -29.33316 -28.47730 -27.45627 -25.83673 -24.13062 -23.47917 -22.50414 -21.35840 -21.10113 -20.58378 -20.28129 -19.88453 -18.42358 -17.91333 -17.20029 -16.91646 -16.57646 -16.40831 -16.14825 -15.96475 -15.71119 -15.34675 -15.15778 -15.06539 -14.98354 -14.51491 -14.23297 -14.06385 -14.01585 -13.81475 -13.56016 -13.41149 -13.11216 -12.99634 -12.88794 -12.77574 -12.68258 -12.40588 -12.18639 -12.11951 -12.06096 -12.04328 -11.63769 -11.51579 -11.47047 -11.33167 -11.25383 -10.90150 -10.40773 -10.30739 -10.01505 -9.97171 -9.33889 -8.46885 -5.95649 1.01405 1.36874 1.42539 1.56542 1.62518 2.05118 2.29700 2.38305 2.99885 3.20599 3.45839 3.54206 3.62111 3.73998 3.78871 4.08432 4.12863 4.27333 4.31048 4.31773 4.37792 4.45532 4.46683 4.48651 4.53119 4.55761 4.59677 4.66570 4.69842 4.73071 4.79317 4.81657 4.85702 4.95201 5.03743 5.13788 5.20119 5.24259 5.29746 5.35782 5.40968 5.41281 5.46681 5.56913 5.63225 5.70497 5.89183 6.10278 6.41252 6.54961 6.60135 7.12760 7.24340 7.56247 8.11635 8.70634 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.001508 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.410910 B =18561.790905 C =19824.845309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.074 4.074 4 H 0.058 0.942 5 C -0.116 4.116 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.107 4.107 9 H 0.125 0.875 10 C 0.515 3.485 11 O -0.583 6.583 12 N -0.717 5.717 13 C 0.152 3.848 14 C -0.163 4.163 15 C -0.126 4.126 16 C 0.088 3.912 17 N -0.684 5.684 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.415 0.585 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.135 0.865 45 H 0.107 0.893 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.345 0.655 49 H 0.105 0.895 50 H 0.071 0.929 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.590 -16.837 -9.593 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.093 4.093 4 H 0.076 0.924 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.128 4.128 9 H 0.142 0.858 10 C 0.303 3.697 11 O -0.463 6.463 12 N -0.369 5.369 13 C 0.029 3.971 14 C -0.182 4.182 15 C -0.145 4.145 16 C -0.040 4.040 17 N -0.316 5.316 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.251 0.749 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.153 0.847 45 H 0.125 0.875 46 H 0.071 0.929 47 H 0.106 0.894 48 H 0.164 0.836 49 H 0.123 0.877 50 H 0.089 0.911 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.592 -16.061 -8.520 29.784 hybrid contribution 1.298 0.197 -0.570 1.431 sum -22.294 -15.864 -9.090 28.833 Atomic orbital electron populations 1.21743 0.95413 1.01819 1.01689 1.21513 0.96466 0.95396 1.01565 1.21852 0.92545 0.96905 0.98000 0.92357 1.22222 0.98285 0.98940 0.95918 1.22126 0.95456 1.00262 0.98128 1.22337 1.01040 0.94084 0.97600 1.22431 0.98176 1.01247 0.90973 0.85751 1.21092 0.82028 0.74517 0.92039 1.90680 1.52211 1.51277 1.52131 1.45990 1.07423 1.74506 1.08936 1.20230 0.92347 1.01752 0.82766 1.22826 0.94336 1.00169 1.00897 1.22828 0.95596 0.97532 0.98546 1.21102 0.92185 0.88636 1.02101 1.60026 1.08157 1.27678 1.35782 1.21545 0.89384 0.92602 1.03176 1.20923 0.82354 0.91383 0.82969 1.90493 1.53963 1.51758 1.54918 1.41933 1.06157 1.12750 1.60135 1.19710 0.92239 0.90061 1.44451 0.90389 1.26016 0.95116 1.03245 0.96739 1.69670 1.02704 1.35362 1.48308 0.84879 0.78035 0.77212 0.78256 1.19874 1.19666 1.19498 0.91682 0.92285 0.94032 0.90467 0.93784 0.90128 0.91745 0.90005 0.91602 0.92890 0.89239 0.74875 0.90972 0.92688 0.84686 0.87521 0.92907 0.89387 0.83633 0.87707 0.91146 0.76902 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.79 71.98 0.70 -1.20 16 2 C -0.11 -1.54 5.32 30.60 0.16 -1.38 16 3 C -0.07 -1.10 1.93 -9.72 -0.02 -1.12 16 4 H 0.06 1.22 7.44 -2.39 -0.02 1.20 16 5 C -0.12 -1.24 5.69 31.32 0.18 -1.06 16 6 C -0.12 -1.23 6.80 31.32 0.21 -1.01 16 7 C -0.11 -1.36 6.26 31.66 0.20 -1.16 16 8 C -0.11 -1.45 2.71 -10.26 -0.03 -1.47 16 9 H 0.12 1.12 8.06 -2.39 -0.02 1.10 16 10 C 0.52 10.18 7.13 87.66 0.62 10.81 16 11 O -0.58 -16.61 15.72 -3.04 -0.05 -16.66 16 12 N -0.72 -11.27 5.55 -466.78 -2.59 -13.86 16 13 C 0.15 2.67 6.11 85.63 0.52 3.19 16 14 C -0.16 -2.46 9.24 25.65 0.24 -2.22 16 15 C -0.13 -2.39 9.38 25.65 0.24 -2.15 16 16 C 0.09 1.83 6.12 85.56 0.52 2.35 16 17 N -0.68 -20.65 6.11 -521.98 -3.19 -23.85 16 18 C 0.07 2.14 6.17 85.56 0.53 2.67 16 19 C 0.44 20.52 7.82 87.66 0.69 21.20 16 20 O -0.62 -34.59 15.78 -3.05 -0.05 -34.64 16 21 N -0.57 -29.07 5.29 -306.98 -1.62 -30.70 16 22 C -0.34 -18.97 9.68 84.04 0.81 -18.15 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 26 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 30 H 0.06 0.68 7.62 -2.39 -0.02 0.66 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.08 0.79 7.95 -2.39 -0.02 0.77 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.65 7.71 -2.39 -0.02 0.64 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.05 0.85 8.04 -2.38 -0.02 0.83 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.41 4.36 8.46 -92.71 -0.78 3.58 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.17 7.79 -2.39 -0.02 1.15 16 44 H 0.14 1.54 7.84 -2.91 -0.02 1.51 16 45 H 0.11 2.31 7.84 -2.91 -0.02 2.28 16 46 H 0.05 0.91 7.79 -2.39 -0.02 0.89 16 47 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.35 10.96 8.42 -89.69 -0.76 10.21 16 49 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 51 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 52 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -72.61 425.94 -0.49 -73.10 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -1.35 Total: 41.60 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.05 Total: 9.15 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.12 Total: -117.20 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.10 Total: -51.30 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.61 -0.49 -73.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497671347.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.021 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds