Wall clock time and date at job start Tue Mar 31 2020 19:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47423 * 2 1 4 4 H 1.09003 * 110.05051 * 54.18554 * 3 2 1 5 5 C 1.54260 * 110.03360 * 292.77647 * 3 2 1 6 6 C 1.54887 * 104.19343 * 217.10268 * 5 3 2 7 7 C 1.54889 * 102.75020 * 37.93938 * 6 5 3 8 8 C 1.53867 * 110.03575 * 175.60340 * 3 2 1 9 9 H 1.09006 * 110.03278 * 238.57600 * 8 3 2 10 10 C 1.50704 * 110.02894 * 0.02562 * 8 3 2 11 11 O 1.21279 * 120.00070 * 87.42680 * 10 8 3 12 12 N 1.34776 * 120.00456 * 267.41887 * 10 8 3 13 13 C 1.46501 * 120.00460 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.46993 * 180.02562 * 13 12 10 15 15 C 1.31001 * 119.99654 * 127.20752 * 14 13 12 16 16 C 1.50698 * 120.00151 * 7.20381 * 15 14 13 17 17 N 1.46898 * 109.47417 * 127.18978 * 16 15 14 18 18 C 1.46897 * 111.00345 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47120 * 180.02562 * 18 17 16 20 20 O 1.21291 * 119.99952 * 359.97438 * 19 18 17 21 21 N 1.34780 * 120.00030 * 180.02562 * 19 18 17 22 22 C 1.37091 * 119.99946 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00476 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99701 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00241 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46976 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47111 * 119.99895 * 26 24 22 29 29 H 1.48503 * 109.46689 * 239.99952 * 26 24 22 30 30 H 1.08999 * 109.47072 * 299.99798 * 1 2 3 31 31 H 1.08994 * 109.47112 * 59.99258 * 1 2 3 32 32 H 1.08995 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46963 * 240.00551 * 2 1 3 34 34 H 1.08994 * 109.47446 * 120.00313 * 2 1 3 35 35 H 1.08997 * 110.48727 * 335.77694 * 5 3 2 36 36 H 1.09002 * 110.49162 * 98.42221 * 5 3 2 37 37 H 1.08998 * 110.75553 * 279.62567 * 6 5 3 38 38 H 1.09007 * 110.75669 * 156.25501 * 6 5 3 39 39 H 1.09005 * 110.48759 * 203.37773 * 7 6 5 40 40 H 1.09000 * 110.48494 * 80.73738 * 7 6 5 41 41 H 0.97009 * 119.99547 * 0.02562 * 12 10 8 42 42 H 1.09000 * 109.46894 * 300.00036 * 13 12 10 43 43 H 1.09000 * 109.47079 * 60.00158 * 13 12 10 44 44 H 1.07997 * 119.99942 * 307.20251 * 14 13 12 45 45 H 1.08002 * 120.00026 * 187.20857 * 15 14 13 46 46 H 1.08999 * 109.47026 * 247.18893 * 16 15 14 47 47 H 1.09000 * 109.46924 * 7.18633 * 16 15 14 48 48 H 1.00901 * 110.99581 * 303.95762 * 17 16 15 49 49 H 1.08995 * 109.47183 * 300.00175 * 18 17 16 50 50 H 1.09003 * 109.47297 * 59.99773 * 18 17 16 51 51 H 0.97002 * 119.99577 * 0.02562 * 21 19 18 52 52 H 0.97000 * 120.00387 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5998 1.9946 0.8304 5 6 1.6873 2.1278 -1.3363 6 6 2.9127 3.0259 -1.6376 7 6 4.1010 2.1537 -1.1620 8 6 3.5747 1.4590 0.1108 9 1 3.8792 2.0191 0.9950 10 6 4.1020 0.0492 0.1845 11 8 4.3460 -0.5610 -0.8347 12 7 4.3027 -0.5335 1.3831 13 6 4.8159 -1.9038 1.4548 14 6 4.9481 -2.3158 2.8984 15 6 4.3933 -3.4266 3.3159 16 6 3.7635 -4.3726 2.3263 17 7 4.3157 -5.7204 2.5174 18 6 3.7230 -6.6718 1.5680 19 6 4.3121 -8.0403 1.7943 20 8 5.1443 -8.2065 2.6609 21 7 3.9151 -9.0792 1.0330 22 6 4.4514 -10.3240 1.2386 23 1 5.1917 -10.4723 2.0107 24 6 4.0424 -11.3949 0.4534 25 7 3.1411 -11.2147 -0.4859 26 14 4.7727 -13.0913 0.7339 27 1 5.7584 -13.0287 1.8427 28 1 3.6898 -14.0442 1.0868 29 1 5.4507 -13.5493 -0.5054 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 1.5561 1.3849 -2.1230 36 1 0.7876 2.7336 -1.2285 37 1 2.8616 3.9533 -1.0672 38 1 2.9876 3.2316 -2.7055 39 1 4.9628 2.7784 -0.9271 40 1 4.3596 1.4150 -1.9206 41 1 4.1073 -0.0455 2.1984 42 1 4.1256 -2.5773 0.9469 43 1 5.7919 -1.9520 0.9720 44 1 5.5003 -1.6953 3.5886 45 1 4.3872 -3.6645 4.3694 46 1 2.6850 -4.3965 2.4823 47 1 3.9766 -4.0330 1.3127 48 1 5.3219 -5.7129 2.4418 49 1 2.6443 -6.7115 1.7191 50 1 3.9354 -6.3483 0.5490 51 1 3.2503 -8.9459 0.3393 52 1 2.8559 -11.9622 -1.0343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497671348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:26 Heat of formation + Delta-G solvation = -73.257321 kcal Electronic energy + Delta-G solvation = -28605.674193 eV Core-core repulsion = 24604.565399 eV Total energy + Delta-G solvation = -4001.108794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80899 -38.41032 -38.00928 -36.89783 -35.02688 -33.89501 -33.49027 -32.83590 -31.19507 -29.98445 -28.00418 -27.81752 -26.08130 -24.72332 -23.24376 -23.13390 -21.90072 -20.94673 -19.94886 -19.33455 -18.53178 -17.84889 -17.11721 -16.97893 -16.43391 -15.84503 -15.63364 -15.36065 -14.94803 -14.80801 -14.62092 -14.50182 -14.24016 -13.86601 -13.63932 -13.58249 -13.52326 -13.28542 -13.04389 -12.69654 -12.34996 -12.22797 -11.92026 -11.77194 -11.64284 -11.61936 -11.46019 -11.40897 -11.24406 -11.08498 -11.00761 -10.93320 -10.90972 -10.78231 -10.33043 -10.21140 -10.05642 -9.54218 -9.50720 -9.12008 -8.44628 -8.04523 -7.94414 -6.40225 -3.81055 1.78080 2.40966 3.07568 3.17671 3.28076 3.35556 3.92246 4.05023 4.13875 4.15343 4.25029 4.39176 4.58089 4.71066 4.80308 4.83500 4.87729 4.96950 5.00927 5.01299 5.14017 5.16790 5.19285 5.26618 5.27028 5.32652 5.38724 5.45751 5.52529 5.59022 5.63194 5.66674 5.70881 5.74385 5.75390 5.81614 5.84711 5.93308 5.98322 5.99289 6.06596 6.14436 6.27179 6.35841 6.52367 7.18440 7.24074 7.56928 7.64849 7.99439 8.07958 8.62703 9.19348 9.55805 10.07125 10.77588 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.001730 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.580295 B =16177.608129 C =16835.110925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.076 4.076 4 H 0.079 0.921 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.114 4.114 8 C -0.111 4.111 9 H 0.089 0.911 10 C 0.523 3.477 11 O -0.537 6.537 12 N -0.727 5.727 13 C 0.137 3.863 14 C -0.191 4.191 15 C -0.109 4.109 16 C 0.070 3.930 17 N -0.664 5.664 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.400 0.600 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.351 0.649 49 H 0.086 0.914 50 H 0.045 0.955 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 31.395 0.835 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.152 4.152 8 C -0.132 4.132 9 H 0.107 0.893 10 C 0.310 3.690 11 O -0.413 6.413 12 N -0.379 5.379 13 C 0.015 3.985 14 C -0.210 4.210 15 C -0.128 4.128 16 C -0.059 4.059 17 N -0.296 5.296 18 C -0.083 4.083 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.234 0.766 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.098 0.902 47 H 0.060 0.940 48 H 0.170 0.830 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.886 30.497 1.044 30.761 hybrid contribution 0.253 -0.357 -0.590 0.735 sum -3.633 30.139 0.454 30.361 Atomic orbital electron populations 1.21751 0.95413 1.01873 1.01653 1.21862 0.96483 0.95619 1.02981 1.21729 0.91956 0.96925 0.98875 0.90256 1.22456 0.97858 0.98568 0.96699 1.22485 0.94538 0.97917 1.01192 1.22380 0.97760 0.98824 0.96243 1.22055 0.96961 0.93175 1.01038 0.89277 1.20473 0.76712 0.88583 0.83218 1.90709 1.51077 1.65159 1.34399 1.46106 1.67447 1.15901 1.08446 1.20533 1.00209 0.82844 0.94949 1.22769 1.02233 0.99795 0.96237 1.22959 0.95134 0.94251 1.00471 1.21265 1.00015 0.88484 0.96136 1.60037 1.11738 1.04258 1.53608 1.21691 1.00165 0.92539 0.93889 1.19787 0.86560 0.85655 0.85344 1.90521 1.36084 1.84654 1.35486 1.41869 1.38423 1.07639 1.32109 1.19759 1.21515 0.83990 1.17579 0.87843 1.25275 0.96733 1.00179 0.95836 1.69621 1.30795 1.32875 1.20998 0.85793 0.78783 0.81410 0.78312 1.19211 1.20741 1.20776 0.92875 0.92604 0.92603 0.90906 0.91668 0.91061 0.91462 0.91497 0.91233 0.91463 0.89483 0.76634 0.89987 0.91019 0.86425 0.85903 0.90172 0.94001 0.82975 0.89530 0.93744 0.77436 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.76 37.16 0.36 -0.69 16 2 C -0.13 -1.06 4.12 -26.73 -0.11 -1.17 16 3 C -0.08 -0.49 2.93 -89.50 -0.26 -0.75 16 4 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 5 C -0.12 -0.74 5.50 -25.08 -0.14 -0.88 16 6 C -0.12 -0.72 6.91 -24.74 -0.17 -0.89 16 7 C -0.11 -0.83 6.31 -25.08 -0.16 -0.99 16 8 C -0.11 -0.77 3.29 -90.66 -0.30 -1.07 16 9 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 10 C 0.52 5.11 4.70 -10.98 -0.05 5.05 16 11 O -0.54 -7.50 15.04 5.56 0.08 -7.42 16 12 N -0.73 -5.80 4.94 -61.47 -0.30 -6.10 16 13 C 0.14 1.32 5.76 -5.19 -0.03 1.29 16 14 C -0.19 -1.63 9.63 -36.02 -0.35 -1.98 16 15 C -0.11 -1.11 9.77 -36.03 -0.35 -1.46 16 16 C 0.07 0.86 5.78 -4.98 -0.03 0.83 16 17 N -0.66 -10.89 6.11 -116.34 -0.71 -11.60 16 18 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 19 C 0.44 10.63 7.82 -10.98 -0.09 10.55 16 20 O -0.58 -16.11 15.78 5.55 0.09 -16.02 16 21 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 22 C -0.30 -8.47 9.68 -14.94 -0.14 -8.61 16 23 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 26 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.37 7.49 -51.93 -0.39 -0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.77 7.13 -51.93 -0.37 0.40 16 34 H 0.06 0.55 6.81 -51.93 -0.35 0.19 16 35 H 0.07 0.53 7.77 -51.93 -0.40 0.13 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.85 6.87 -51.93 -0.36 0.49 16 41 H 0.40 2.12 8.46 -40.82 -0.35 1.78 16 42 H 0.08 0.91 5.29 -51.93 -0.27 0.64 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.04 0.51 5.29 -51.93 -0.27 0.23 16 48 H 0.35 5.99 8.42 -39.29 -0.33 5.66 16 49 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 50 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 415.43 15.07 6.26 6.26 Total: -1.00 -33.32 415.43 -9.73 -43.05 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -8.85 Total: 13.73 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.94 Total: 0.58 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.35 Total: -56.46 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.32 -9.73 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497671348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.207 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds