Wall clock time and date at job start Tue Mar 31 2020 19:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47423 * 2 1 4 4 H 1.09003 * 110.05051 * 54.18554 * 3 2 1 5 5 C 1.54260 * 110.03360 * 292.77647 * 3 2 1 6 6 C 1.54887 * 104.19343 * 217.10268 * 5 3 2 7 7 C 1.54889 * 102.75020 * 37.93938 * 6 5 3 8 8 C 1.53867 * 110.03575 * 175.60340 * 3 2 1 9 9 H 1.09006 * 110.03278 * 238.57600 * 8 3 2 10 10 C 1.50704 * 110.02894 * 0.02562 * 8 3 2 11 11 O 1.21279 * 120.00070 * 87.42680 * 10 8 3 12 12 N 1.34776 * 120.00456 * 267.41887 * 10 8 3 13 13 C 1.46501 * 120.00460 * 180.02562 * 12 10 8 14 14 C 1.50703 * 109.46993 * 180.02562 * 13 12 10 15 15 C 1.31001 * 119.99654 * 127.20752 * 14 13 12 16 16 C 1.50698 * 120.00151 * 7.20381 * 15 14 13 17 17 N 1.46898 * 109.47417 * 127.18978 * 16 15 14 18 18 C 1.46897 * 111.00345 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47120 * 180.02562 * 18 17 16 20 20 O 1.21291 * 119.99952 * 359.97438 * 19 18 17 21 21 N 1.34780 * 120.00030 * 180.02562 * 19 18 17 22 22 C 1.37091 * 119.99946 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00476 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99701 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00241 * 359.97438 * 24 22 21 26 26 Si 1.86809 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46976 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47111 * 119.99895 * 26 24 22 29 29 H 1.48503 * 109.46689 * 239.99952 * 26 24 22 30 30 H 1.08999 * 109.47072 * 299.99798 * 1 2 3 31 31 H 1.08994 * 109.47112 * 59.99258 * 1 2 3 32 32 H 1.08995 * 109.46985 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46963 * 240.00551 * 2 1 3 34 34 H 1.08994 * 109.47446 * 120.00313 * 2 1 3 35 35 H 1.08997 * 110.48727 * 335.77694 * 5 3 2 36 36 H 1.09002 * 110.49162 * 98.42221 * 5 3 2 37 37 H 1.08998 * 110.75553 * 279.62567 * 6 5 3 38 38 H 1.09007 * 110.75669 * 156.25501 * 6 5 3 39 39 H 1.09005 * 110.48759 * 203.37773 * 7 6 5 40 40 H 1.09000 * 110.48494 * 80.73738 * 7 6 5 41 41 H 0.97009 * 119.99547 * 0.02562 * 12 10 8 42 42 H 1.09000 * 109.46894 * 300.00036 * 13 12 10 43 43 H 1.09000 * 109.47079 * 60.00158 * 13 12 10 44 44 H 1.07997 * 119.99942 * 307.20251 * 14 13 12 45 45 H 1.08002 * 120.00026 * 187.20857 * 15 14 13 46 46 H 1.08999 * 109.47026 * 247.18893 * 16 15 14 47 47 H 1.09000 * 109.46924 * 7.18633 * 16 15 14 48 48 H 1.00901 * 110.99581 * 303.95762 * 17 16 15 49 49 H 1.08995 * 109.47183 * 300.00175 * 18 17 16 50 50 H 1.09003 * 109.47297 * 59.99773 * 18 17 16 51 51 H 0.97002 * 119.99577 * 0.02562 * 21 19 18 52 52 H 0.97000 * 120.00387 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5998 1.9946 0.8304 5 6 1.6873 2.1278 -1.3363 6 6 2.9127 3.0259 -1.6376 7 6 4.1010 2.1537 -1.1620 8 6 3.5747 1.4590 0.1108 9 1 3.8792 2.0191 0.9950 10 6 4.1020 0.0492 0.1845 11 8 4.3460 -0.5610 -0.8347 12 7 4.3027 -0.5335 1.3831 13 6 4.8159 -1.9038 1.4548 14 6 4.9481 -2.3158 2.8984 15 6 4.3933 -3.4266 3.3159 16 6 3.7635 -4.3726 2.3263 17 7 4.3157 -5.7204 2.5174 18 6 3.7230 -6.6718 1.5680 19 6 4.3121 -8.0403 1.7943 20 8 5.1443 -8.2065 2.6609 21 7 3.9151 -9.0792 1.0330 22 6 4.4514 -10.3240 1.2386 23 1 5.1917 -10.4723 2.0107 24 6 4.0424 -11.3949 0.4534 25 7 3.1411 -11.2147 -0.4859 26 14 4.7727 -13.0913 0.7339 27 1 5.7584 -13.0287 1.8427 28 1 3.6898 -14.0442 1.0868 29 1 5.4507 -13.5493 -0.5054 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 1.5561 1.3849 -2.1230 36 1 0.7876 2.7336 -1.2285 37 1 2.8616 3.9533 -1.0672 38 1 2.9876 3.2316 -2.7055 39 1 4.9628 2.7784 -0.9271 40 1 4.3596 1.4150 -1.9206 41 1 4.1073 -0.0455 2.1984 42 1 4.1256 -2.5773 0.9469 43 1 5.7919 -1.9520 0.9720 44 1 5.5003 -1.6953 3.5886 45 1 4.3872 -3.6645 4.3694 46 1 2.6850 -4.3965 2.4823 47 1 3.9766 -4.0330 1.3127 48 1 5.3219 -5.7129 2.4418 49 1 2.6443 -6.7115 1.7191 50 1 3.9354 -6.3483 0.5490 51 1 3.2503 -8.9459 0.3393 52 1 2.8559 -11.9622 -1.0343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497671348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:24 Heat of formation + Delta-G solvation = -96.936540 kcal Electronic energy + Delta-G solvation = -28606.701001 eV Core-core repulsion = 24604.565399 eV Total energy + Delta-G solvation = -4002.135602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.51122 -40.20773 -38.77789 -37.90213 -36.25424 -35.75417 -34.11006 -33.83589 -33.25705 -30.62485 -29.17021 -28.48546 -27.25140 -26.23841 -24.51145 -23.81335 -22.58847 -21.47857 -21.21187 -20.61607 -19.96902 -19.32317 -18.09156 -17.82062 -17.40145 -17.08287 -16.70644 -16.46662 -16.33505 -15.94399 -15.75055 -15.40318 -15.27786 -15.19789 -14.86546 -14.69557 -14.44380 -14.18196 -13.99320 -13.70799 -13.51636 -13.36502 -13.20177 -12.98713 -12.89091 -12.70284 -12.48317 -12.42350 -12.21580 -12.12017 -11.88589 -11.88348 -11.78137 -11.53640 -11.50802 -11.47340 -11.35935 -10.83516 -10.39665 -10.32915 -10.04315 -9.92161 -9.34445 -8.48731 -5.97960 1.00023 1.35587 1.40810 1.55567 1.65647 2.01497 2.27780 2.37390 2.97435 3.18087 3.49530 3.52406 3.62595 3.71419 3.78156 4.03560 4.11311 4.15183 4.20813 4.27707 4.36381 4.40635 4.41529 4.49461 4.50950 4.54650 4.61445 4.66571 4.69067 4.75294 4.77327 4.78710 4.89090 5.00256 5.04536 5.12840 5.17467 5.23225 5.26392 5.35357 5.39031 5.39610 5.44906 5.54357 5.56620 5.71080 5.85009 6.05588 6.35076 6.57073 6.59213 7.09877 7.29267 7.52809 8.07704 8.68936 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.001730 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.580295 B =16177.608129 C =16835.110925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.072 4.072 4 H 0.106 0.894 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.107 4.107 9 H 0.122 0.878 10 C 0.520 3.480 11 O -0.587 6.587 12 N -0.713 5.713 13 C 0.137 3.863 14 C -0.162 4.162 15 C -0.125 4.125 16 C 0.072 3.928 17 N -0.676 5.676 18 C 0.063 3.937 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.416 0.584 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.145 0.855 45 H 0.128 0.872 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.345 0.655 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 33.556 1.948 33.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.091 4.091 4 H 0.124 0.876 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.128 4.128 9 H 0.140 0.860 10 C 0.308 3.692 11 O -0.467 6.467 12 N -0.366 5.366 13 C 0.014 3.986 14 C -0.181 4.181 15 C -0.144 4.144 16 C -0.055 4.055 17 N -0.308 5.308 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.163 0.837 45 H 0.146 0.854 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.163 0.837 49 H 0.123 0.877 50 H 0.080 0.920 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.571 32.698 2.174 33.087 hybrid contribution 0.465 -0.968 -0.965 1.444 sum -4.106 31.729 1.209 32.017 Atomic orbital electron populations 1.21734 0.94555 1.01543 1.02598 1.21792 0.97223 0.96580 1.01051 1.21774 0.91531 0.95881 0.99882 0.87597 1.22464 0.98887 0.98372 0.96010 1.22483 0.93338 0.98261 1.01477 1.22377 0.99036 0.98495 0.95686 1.22149 0.97187 0.91304 1.02181 0.85980 1.21059 0.75832 0.89552 0.82754 1.90692 1.53245 1.66556 1.36204 1.45972 1.66512 1.15233 1.08863 1.20407 0.99152 0.83539 0.95522 1.22843 1.00529 0.99204 0.95568 1.22830 0.96769 0.94617 1.00191 1.21298 1.00345 0.86785 0.97104 1.60056 1.11392 1.06103 1.53247 1.21550 1.00691 0.89330 0.95332 1.20819 0.85487 0.87333 0.83863 1.90485 1.37726 1.85722 1.36928 1.41944 1.38750 1.07616 1.32688 1.19728 1.22548 0.85814 1.18330 0.90206 1.26093 0.96763 1.03437 0.95132 1.69683 1.31091 1.34222 1.21166 0.84835 0.78156 0.76810 0.78304 1.19707 1.19488 1.19591 0.91227 0.92273 0.93643 0.94354 0.92083 0.93224 0.89771 0.89361 0.91418 0.90198 0.92831 0.74645 0.91736 0.92298 0.83711 0.85434 0.89664 0.93789 0.83686 0.87657 0.91983 0.76991 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.76 71.98 0.70 -1.22 16 2 C -0.13 -2.01 4.12 30.60 0.13 -1.89 16 3 C -0.07 -0.78 2.93 -10.07 -0.03 -0.81 16 4 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 5 C -0.12 -1.33 5.50 31.67 0.17 -1.16 16 6 C -0.12 -1.17 6.91 31.88 0.22 -0.95 16 7 C -0.12 -1.61 6.31 31.67 0.20 -1.41 16 8 C -0.11 -1.29 3.29 -10.82 -0.04 -1.32 16 9 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 10 C 0.52 9.93 4.70 87.66 0.41 10.34 16 11 O -0.59 -17.24 15.04 -3.02 -0.05 -17.29 16 12 N -0.71 -10.37 4.94 -466.78 -2.31 -12.68 16 13 C 0.14 2.54 5.76 85.63 0.49 3.03 16 14 C -0.16 -2.43 9.63 25.65 0.25 -2.18 16 15 C -0.12 -2.36 9.77 25.65 0.25 -2.11 16 16 C 0.07 1.73 5.78 85.56 0.49 2.22 16 17 N -0.68 -22.00 6.11 -522.00 -3.19 -25.19 16 18 C 0.06 2.28 6.17 85.56 0.53 2.81 16 19 C 0.44 21.52 7.82 87.66 0.69 22.20 16 20 O -0.62 -35.35 15.78 -3.06 -0.05 -35.40 16 21 N -0.57 -30.28 5.29 -306.99 -1.62 -31.90 16 22 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 23 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 26 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.72 7.49 -2.39 -0.02 0.71 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.86 7.13 -2.38 -0.02 0.85 16 34 H 0.06 0.97 6.81 -2.39 -0.02 0.96 16 35 H 0.05 0.76 7.77 -2.39 -0.02 0.74 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.05 1.11 6.87 -2.39 -0.02 1.09 16 41 H 0.42 3.23 8.46 -92.70 -0.78 2.44 16 42 H 0.06 1.45 5.29 -2.39 -0.01 1.44 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.04 1.05 5.29 -2.39 -0.01 1.04 16 48 H 0.34 11.86 8.42 -89.69 -0.76 11.10 16 49 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.40 19.93 7.90 -92.71 -0.73 19.20 16 52 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -75.04 415.43 -0.49 -75.53 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -1.33 Total: 43.01 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.75 Total: 8.60 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -6.84 Total: -120.14 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.09 Total: -52.68 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -75.04 -0.49 -75.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497671348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.407 kcal (2) G-P(sol) polarization free energy of solvation -75.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds