Wall clock time and date at job start Tue Mar 31 2020 20:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47118 * 2 1 4 4 H 1.09008 * 109.46829 * 305.00259 * 3 2 1 5 5 C 1.52994 * 109.46819 * 64.99794 * 3 2 1 6 6 C 1.50695 * 109.47114 * 185.00048 * 3 2 1 7 7 O 1.21281 * 120.00409 * 335.28377 * 6 3 2 8 8 N 1.34784 * 119.99817 * 155.28451 * 6 3 2 9 9 C 1.47084 * 120.95262 * 185.16022 * 8 6 3 10 10 C 1.53098 * 108.59153 * 128.30983 * 9 8 6 11 11 H 1.08998 * 109.28163 * 172.96581 * 10 9 8 12 12 C 1.52872 * 109.67924 * 292.04452 * 10 9 8 13 13 C 1.53137 * 109.35698 * 62.59103 * 12 10 9 14 14 C 1.53125 * 108.98763 * 58.16079 * 13 12 10 15 15 C 1.52875 * 109.35212 * 301.83435 * 14 13 12 16 16 H 1.08996 * 109.27560 * 178.34864 * 15 14 13 17 17 C 1.47077 * 120.95121 * 4.87940 * 8 6 3 18 18 N 1.46646 * 110.05495 * 58.33883 * 15 14 13 19 19 C 1.46904 * 111.00218 * 175.59185 * 18 15 14 20 20 C 1.50693 * 109.47212 * 192.24161 * 19 18 15 21 21 O 1.21289 * 120.00466 * 6.47997 * 20 19 18 22 22 N 1.34775 * 119.99833 * 186.48194 * 20 19 18 23 23 C 1.37095 * 120.00212 * 179.97438 * 22 20 19 24 24 H 1.07998 * 119.99995 * 359.97438 * 23 22 20 25 25 C 1.38951 * 120.00429 * 180.02562 * 23 22 20 26 26 N 1.31421 * 119.99762 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00547 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47210 * 89.99887 * 27 25 23 29 29 H 1.48504 * 109.47689 * 210.00343 * 27 25 23 30 30 H 1.48506 * 109.46814 * 330.00233 * 27 25 23 31 31 H 1.09004 * 109.46480 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47045 * 299.99676 * 1 2 3 33 33 H 1.09002 * 109.47282 * 60.00494 * 1 2 3 34 34 H 1.09004 * 109.47295 * 239.99941 * 2 1 3 35 35 H 1.08996 * 109.47309 * 119.99940 * 2 1 3 36 36 H 1.08997 * 109.47596 * 294.74410 * 5 3 2 37 37 H 1.09008 * 109.47296 * 174.74727 * 5 3 2 38 38 H 1.08999 * 109.47412 * 54.74615 * 5 3 2 39 39 H 1.08995 * 109.61323 * 248.04343 * 9 8 6 40 40 H 1.09004 * 109.61114 * 8.40108 * 9 8 6 41 41 H 1.08994 * 109.49350 * 182.55527 * 12 10 9 42 42 H 1.08996 * 109.48591 * 302.62915 * 12 10 9 43 43 H 1.08999 * 109.55080 * 298.30772 * 13 12 10 44 44 H 1.09001 * 109.54722 * 178.01275 * 13 12 10 45 45 H 1.09004 * 109.49200 * 181.87521 * 14 13 12 46 46 H 1.08999 * 109.51207 * 61.80913 * 14 13 12 47 47 H 1.09010 * 109.61904 * 351.41087 * 17 8 6 48 48 H 1.08996 * 109.62139 * 111.94858 * 17 8 6 49 49 H 1.09003 * 109.46536 * 312.23741 * 19 18 15 50 50 H 1.08994 * 109.46667 * 72.23582 * 19 18 15 51 51 H 0.97001 * 120.00255 * 0.02562 * 22 20 19 52 52 H 0.97000 * 119.99827 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.1812 0.4786 0.2361 8 7 4.1746 2.5192 -0.6346 9 6 5.6264 2.5015 -0.8697 10 6 5.8928 2.9416 -2.3117 11 1 6.9667 3.0532 -2.4613 12 6 5.3707 1.8792 -3.2790 13 6 3.8538 1.7463 -3.1164 14 6 3.2032 3.1068 -3.3815 15 6 3.7765 4.1401 -2.4116 16 1 3.3342 5.1141 -2.6207 17 6 3.4322 3.7414 -0.9786 18 7 5.2319 4.2251 -2.5697 19 6 5.7926 5.2857 -1.7220 20 6 7.2211 5.5478 -2.1242 21 8 7.6864 4.9998 -3.1010 22 7 7.9816 6.3911 -1.3984 23 6 9.2813 6.6292 -1.7639 24 1 9.6959 6.1406 -2.6332 25 6 10.0656 7.4982 -1.0153 26 7 9.5615 8.0917 0.0435 27 14 11.8366 7.8221 -1.5129 28 1 11.8856 8.9768 -2.4453 29 1 12.6427 8.1277 -0.3037 30 1 12.3897 6.6190 -2.1854 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.5493 2.2088 1.3533 37 1 2.0770 3.1222 1.3485 38 1 1.9909 1.5360 2.1516 39 1 6.1171 3.1888 -0.1807 40 1 6.0097 1.4928 -0.7154 41 1 5.6022 2.1739 -4.3024 42 1 5.8452 0.9228 -3.0593 43 1 3.6227 1.4230 -2.1014 44 1 3.4733 1.0148 -3.8293 45 1 2.1258 3.0294 -3.2353 46 1 3.4100 3.4158 -4.4061 47 1 2.3613 3.5535 -0.8997 48 1 3.7162 4.5454 -0.2997 49 1 5.2074 6.1970 -1.8456 50 1 5.7605 4.9719 -0.6787 51 1 7.6096 6.8291 -0.6169 52 1 10.1089 8.6986 0.5658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499543106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:00 Heat of formation + Delta-G solvation = -58.255665 kcal Electronic energy + Delta-G solvation = -31925.914115 eV Core-core repulsion = 27925.455841 eV Total energy + Delta-G solvation = -4000.458273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60681 -39.18872 -37.81330 -35.69821 -34.36616 -33.96220 -33.28741 -32.77690 -31.21517 -30.07165 -27.96710 -26.48366 -26.21003 -25.20145 -24.30820 -22.66112 -22.28725 -21.39508 -19.34981 -19.33044 -18.18274 -17.79761 -17.43195 -16.17827 -15.96480 -15.72702 -15.37850 -15.08642 -14.87919 -14.57799 -14.42325 -13.99824 -13.84654 -13.73326 -13.68249 -13.38239 -13.26928 -13.06513 -12.79568 -12.56083 -12.46419 -12.29558 -12.01779 -11.90732 -11.68057 -11.58970 -11.48530 -11.36819 -11.08717 -11.03033 -10.99527 -10.92593 -10.76978 -10.40236 -10.29015 -10.24977 -10.17508 -9.68394 -9.45834 -8.96054 -8.36408 -7.97155 -7.60288 -6.42719 -3.83392 2.53499 2.84254 3.17251 3.26161 3.31742 3.87119 3.90628 4.20838 4.24204 4.45850 4.61192 4.66410 4.74395 4.87668 4.94062 5.02197 5.05113 5.08088 5.13625 5.17795 5.20238 5.23570 5.27704 5.33416 5.47389 5.51615 5.55928 5.60176 5.63782 5.66590 5.71125 5.75434 5.81763 5.84376 5.90884 5.96663 5.97294 6.02680 6.07449 6.09628 6.18524 6.26688 6.33561 6.47597 6.57778 7.24154 7.32940 7.39327 7.54463 8.05451 8.09523 8.60656 9.17459 9.53420 10.05125 10.75007 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.002899 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.880236 B = 9657.200376 C =10075.024881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.143 4.143 6 C 0.522 3.478 7 O -0.542 6.542 8 N -0.602 5.602 9 C 0.077 3.923 10 C 0.075 3.925 11 H 0.115 0.885 12 C -0.103 4.103 13 C -0.138 4.138 14 C -0.104 4.104 15 C 0.072 3.928 16 H 0.093 0.907 17 C 0.069 3.931 18 N -0.498 5.498 19 C 0.041 3.959 20 C 0.443 3.557 21 O -0.575 6.575 22 N -0.564 5.564 23 C -0.297 4.297 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.049 0.951 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.976 -10.097 0.780 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.134 4.134 4 H 0.111 0.889 5 C -0.201 4.201 6 C 0.311 3.689 7 O -0.419 6.419 8 N -0.336 5.336 9 C -0.047 4.047 10 C -0.034 4.034 11 H 0.133 0.867 12 C -0.140 4.140 13 C -0.176 4.176 14 C -0.142 4.142 15 C -0.038 4.038 16 H 0.111 0.889 17 C -0.055 4.055 18 N -0.220 5.220 19 C -0.090 4.090 20 C 0.229 3.771 21 O -0.459 6.459 22 N -0.201 5.201 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.107 0.893 50 H 0.067 0.933 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.112 -10.723 -0.035 21.915 hybrid contribution 0.544 0.598 1.168 1.421 sum -18.568 -10.125 1.132 21.179 Atomic orbital electron populations 1.21824 0.95368 1.01892 1.01884 1.21367 0.95500 0.94131 1.03379 1.21414 0.92021 0.99326 1.00612 0.88906 1.21795 1.02030 1.00473 0.95792 1.20492 0.90126 0.81965 0.76281 1.90691 1.68080 1.34297 1.48854 1.48201 1.08665 1.14080 1.62626 1.22382 0.79817 1.03853 0.98608 1.21998 1.01642 0.88411 0.91332 0.86684 1.21457 0.95093 0.97390 1.00109 1.22006 0.96215 0.96720 1.02610 1.21496 0.98313 0.94553 0.99839 1.21899 0.89469 0.99875 0.92566 0.88940 1.22498 0.97431 0.87207 0.98400 1.61342 1.01489 1.04705 1.54461 1.21919 0.96516 0.95403 0.95118 1.19705 0.86947 0.84268 0.86215 1.90511 1.73816 1.53000 1.28582 1.41875 1.11759 1.39860 1.26631 1.19682 0.86722 1.24417 1.11886 0.87922 1.25253 1.00402 0.96578 0.95702 1.69613 1.37748 1.30018 1.16990 0.85872 0.81737 0.78925 0.77849 1.20409 1.20962 1.19420 0.92478 0.92401 0.92698 0.91655 0.90923 0.91169 0.92161 0.91846 0.91255 0.88671 0.90968 0.92009 0.90644 0.92880 0.92031 0.90891 0.89165 0.90973 0.89261 0.93328 0.77586 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.11 -0.94 4.84 -26.73 -0.13 -1.07 16 3 C -0.11 -1.01 1.77 -91.77 -0.16 -1.18 16 4 H 0.09 0.70 6.48 -51.92 -0.34 0.36 16 5 C -0.14 -1.11 8.60 37.15 0.32 -0.79 16 6 C 0.52 6.67 4.47 -10.98 -0.05 6.62 16 7 O -0.54 -8.96 15.67 5.56 0.09 -8.88 16 8 N -0.60 -7.46 1.66 -172.88 -0.29 -7.75 16 9 C 0.08 1.14 5.32 -3.67 -0.02 1.12 16 10 C 0.08 1.19 2.53 -67.86 -0.17 1.02 16 11 H 0.12 2.24 6.10 -51.93 -0.32 1.92 16 12 C -0.10 -1.44 5.59 -26.73 -0.15 -1.59 16 13 C -0.14 -1.63 5.63 -26.60 -0.15 -1.78 16 14 C -0.10 -1.10 5.57 -26.73 -0.15 -1.25 16 15 C 0.07 0.82 2.83 -68.08 -0.19 0.62 16 16 H 0.09 0.94 8.01 -51.93 -0.42 0.53 16 17 C 0.07 0.70 4.67 -3.89 -0.02 0.68 16 18 N -0.50 -7.66 4.24 -220.84 -0.94 -8.60 16 19 C 0.04 0.69 4.69 -4.98 -0.02 0.67 16 20 C 0.44 10.04 7.33 -10.99 -0.08 9.96 16 21 O -0.58 -15.00 14.30 5.55 0.08 -14.92 16 22 N -0.56 -13.92 5.29 -10.97 -0.06 -13.98 16 23 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 24 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 25 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 26 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 27 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.33 6.68 -51.94 -0.35 -0.01 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.73 8.03 -51.93 -0.42 0.32 16 36 H 0.07 0.41 6.83 -51.93 -0.35 0.05 16 37 H 0.06 0.46 7.46 -51.92 -0.39 0.08 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.09 6.72 -51.93 -0.35 0.74 16 40 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.93 3.23 -51.93 -0.17 0.76 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.68 5.26 -51.92 -0.27 0.41 16 48 H 0.07 0.73 7.17 -51.93 -0.37 0.35 16 49 H 0.09 1.33 7.96 -51.93 -0.41 0.92 16 50 H 0.05 0.76 5.41 -51.93 -0.28 0.48 16 51 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 52 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -31.74 382.85 -8.94 -40.68 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -8.44 Total: 10.71 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -0.86 Total: 4.62 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.56 Total: -53.92 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.17 Total: -23.80 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.74 -8.94 -40.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499543106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.574 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds