Wall clock time and date at job start Tue Mar 31 2020 20:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47462 * 2 1 4 4 H 1.09002 * 109.46816 * 54.99701 * 3 2 1 5 5 C 1.53001 * 109.47005 * 295.00037 * 3 2 1 6 6 C 1.50693 * 109.47146 * 175.00548 * 3 2 1 7 7 O 1.21280 * 120.00231 * 24.00901 * 6 3 2 8 8 N 1.34786 * 119.99715 * 204.29294 * 6 3 2 9 9 C 1.47080 * 120.95040 * 354.81137 * 8 6 3 10 10 C 1.53522 * 108.37006 * 128.31274 * 9 8 6 11 11 H 1.08994 * 108.64265 * 172.74494 * 10 9 8 12 12 C 1.52873 * 109.81803 * 292.22001 * 10 9 8 13 13 C 1.53130 * 109.35453 * 62.57451 * 12 10 9 14 14 C 1.53127 * 108.98405 * 58.16791 * 13 12 10 15 15 C 1.52872 * 109.35871 * 301.83553 * 14 13 12 16 16 H 1.08998 * 108.71166 * 177.97863 * 15 14 13 17 17 C 1.47082 * 120.94786 * 175.09186 * 8 6 3 18 18 N 1.46652 * 110.05402 * 58.33208 * 15 14 13 19 19 C 1.46897 * 111.00360 * 175.60077 * 18 15 14 20 20 C 1.50697 * 109.47355 * 189.99780 * 19 18 15 21 21 O 1.21292 * 120.00052 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99837 * 179.97438 * 20 19 18 23 23 C 1.37101 * 119.99930 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99935 * 0.02562 * 23 22 20 25 25 C 1.38952 * 120.00115 * 180.02562 * 23 22 20 26 26 N 1.31421 * 119.99754 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00280 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.46989 * 59.99980 * 27 25 23 29 29 H 1.48494 * 109.47554 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.47120 * 300.00291 * 27 25 23 31 31 H 1.09001 * 109.47008 * 300.00138 * 1 2 3 32 32 H 1.08998 * 109.47185 * 59.99707 * 1 2 3 33 33 H 1.08996 * 109.47701 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46641 * 239.99494 * 2 1 3 35 35 H 1.08998 * 109.47185 * 120.00292 * 2 1 3 36 36 H 1.08996 * 109.47368 * 306.22232 * 5 3 2 37 37 H 1.09007 * 109.47187 * 66.21683 * 5 3 2 38 38 H 1.08997 * 109.47087 * 186.21508 * 5 3 2 39 39 H 1.08997 * 109.61647 * 248.09646 * 9 8 6 40 40 H 1.09001 * 109.61258 * 8.63004 * 9 8 6 41 41 H 1.09002 * 109.48981 * 182.53945 * 12 10 9 42 42 H 1.08996 * 109.48934 * 302.58655 * 12 10 9 43 43 H 1.08998 * 109.54947 * 178.01698 * 13 12 10 44 44 H 1.09000 * 109.54962 * 298.31523 * 13 12 10 45 45 H 1.09005 * 109.49116 * 181.87717 * 14 13 12 46 46 H 1.08992 * 109.49648 * 61.80600 * 14 13 12 47 47 H 1.08998 * 109.62036 * 351.37477 * 17 8 6 48 48 H 1.09008 * 109.61250 * 111.91505 * 17 8 6 49 49 H 1.09001 * 109.46886 * 309.99757 * 19 18 15 50 50 H 1.09003 * 109.47014 * 69.99244 * 19 18 15 51 51 H 0.97003 * 120.00490 * 0.02562 * 22 20 19 52 52 H 0.96999 * 119.99412 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4442 0.1237 7 8 4.1802 0.4734 -0.2244 8 7 4.1754 2.5224 0.6265 9 6 3.4348 3.7498 0.9553 10 6 3.7823 4.1536 2.3951 11 1 3.3400 5.1285 2.6000 12 6 3.2135 3.1257 3.3733 13 6 3.8644 1.7640 3.1140 14 6 5.3816 1.8994 3.2703 15 6 5.8993 2.9563 2.2947 16 1 6.9736 3.0698 2.4398 17 6 5.6281 2.5072 0.8564 18 7 5.2383 4.2408 2.5475 19 6 5.7948 5.2968 1.6914 20 6 5.2737 6.6366 2.1433 21 8 4.5138 6.7051 3.0862 22 7 5.6528 7.7588 1.5004 23 6 5.1783 8.9777 1.9112 24 1 4.5010 9.0387 2.7502 25 6 5.5687 10.1347 1.2481 26 7 6.3925 10.0605 0.2268 27 14 4.9228 11.7955 1.8082 28 1 5.3284 12.0350 3.2166 29 1 5.4858 12.8631 0.9431 30 1 3.4410 11.8088 1.7107 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.9760 1.5272 -2.1516 37 1 0.5503 2.2242 -1.3456 38 1 2.0911 3.1154 -1.3562 39 1 3.7233 4.5461 0.2692 40 1 2.3638 3.5637 0.8744 41 1 3.4241 3.4408 4.3953 42 1 2.1356 3.0467 3.2319 43 1 3.4870 1.0366 3.8327 44 1 3.6299 1.4345 2.1018 45 1 5.8563 0.9420 3.0548 46 1 5.6167 2.2005 4.2911 47 1 6.0113 1.4973 0.7100 48 1 6.1157 3.1909 0.1615 49 1 6.8824 5.2870 1.7630 50 1 5.4972 5.1210 0.6576 51 1 6.2608 7.7041 0.7466 52 1 6.6653 10.8682 -0.2359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499543107.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:02 Heat of formation + Delta-G solvation = -77.371542 kcal Electronic energy + Delta-G solvation = -32017.261538 eV Core-core repulsion = 28015.974338 eV Total energy + Delta-G solvation = -4001.287200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65276 -40.43939 -39.42782 -36.49366 -36.00859 -35.29856 -34.53627 -33.74962 -33.19985 -30.73950 -29.27712 -27.58928 -27.35306 -26.26308 -25.71940 -23.63769 -23.44781 -22.21661 -21.06560 -20.23863 -19.92134 -19.06902 -18.48236 -17.72309 -17.05983 -16.77527 -16.54650 -16.43446 -16.28091 -15.76948 -15.63562 -15.32877 -15.21697 -14.95012 -14.65003 -14.46913 -14.31653 -14.15323 -13.93670 -13.66215 -13.45248 -13.41476 -13.08025 -13.01322 -12.86328 -12.71165 -12.61661 -12.48346 -12.47053 -12.40140 -12.11771 -12.05083 -11.83979 -11.68155 -11.61325 -11.53647 -11.29843 -11.21221 -10.68614 -10.24246 -9.99303 -9.92536 -8.77113 -8.43614 -5.91760 1.41140 1.43509 1.53529 1.53714 1.85298 2.08716 2.29848 2.73668 3.23339 3.35438 3.38354 3.68547 3.76367 3.79368 3.93004 3.95828 4.02014 4.04002 4.18097 4.23596 4.29736 4.38467 4.43892 4.49486 4.52221 4.56855 4.59800 4.62660 4.66516 4.69238 4.71047 4.83932 4.91408 4.92641 4.98563 5.03909 5.08448 5.09691 5.17832 5.18360 5.31014 5.33017 5.39837 5.44239 5.48476 5.50347 5.93446 6.12621 6.27133 6.31057 6.63638 7.08226 7.16283 7.60159 8.15418 8.73430 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.003125 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.595533 B = 8957.296621 C = 9557.166354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.111 4.111 4 H 0.108 0.892 5 C -0.142 4.142 6 C 0.523 3.477 7 O -0.579 6.579 8 N -0.599 5.599 9 C 0.077 3.923 10 C 0.069 3.931 11 H 0.088 0.912 12 C -0.097 4.097 13 C -0.133 4.133 14 C -0.102 4.102 15 C 0.076 3.924 16 H 0.103 0.897 17 C 0.080 3.920 18 N -0.514 5.514 19 C 0.055 3.945 20 C 0.446 3.554 21 O -0.609 6.609 22 N -0.574 5.574 23 C -0.328 4.328 24 H 0.081 0.919 25 C -0.013 4.013 26 N -0.922 5.922 27 Si 0.990 3.010 28 H -0.273 1.273 29 H -0.274 1.274 30 H -0.270 1.270 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.069 0.931 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.394 0.606 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 -18.085 -1.620 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 C -0.132 4.132 4 H 0.126 0.874 5 C -0.199 4.199 6 C 0.314 3.686 7 O -0.459 6.459 8 N -0.332 5.332 9 C -0.047 4.047 10 C -0.040 4.040 11 H 0.106 0.894 12 C -0.135 4.135 13 C -0.171 4.171 14 C -0.140 4.140 15 C -0.033 4.033 16 H 0.121 0.879 17 C -0.044 4.044 18 N -0.237 5.237 19 C -0.076 4.076 20 C 0.234 3.766 21 O -0.494 6.494 22 N -0.212 5.212 23 C -0.458 4.458 24 H 0.099 0.901 25 C -0.212 4.212 26 N -0.563 5.563 27 Si 0.814 3.186 28 H -0.199 1.199 29 H -0.199 1.199 30 H -0.195 1.195 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.082 0.918 51 H 0.228 0.772 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.724 -18.268 -0.813 19.850 hybrid contribution 0.405 1.008 -0.992 1.471 sum -7.319 -17.260 -1.805 18.834 Atomic orbital electron populations 1.21804 0.93464 1.02561 1.02770 1.21321 0.97092 0.93356 1.02138 1.21486 0.89733 1.00102 1.01852 0.87446 1.21809 1.03573 0.99850 0.94678 1.21030 0.91347 0.81217 0.75035 1.90656 1.69136 1.35304 1.50782 1.48242 1.08389 1.13903 1.62667 1.22622 0.98712 0.85887 0.97478 1.22109 0.88076 1.00796 0.93030 0.89379 1.21428 0.99651 0.93765 0.98630 1.21970 0.95563 0.96797 1.02774 1.21468 0.96190 0.97257 0.99053 1.22011 0.99825 0.88625 0.92858 0.87908 1.22284 0.80916 1.03482 0.97759 1.61327 1.04285 1.04037 1.54040 1.21739 1.01063 0.89106 0.95660 1.20605 0.84797 0.86159 0.85069 1.90456 1.40263 1.87263 1.31453 1.41930 1.43245 1.05360 1.30642 1.19609 1.26938 0.84043 1.15170 0.90089 1.25992 0.96692 1.02736 0.95825 1.69674 1.34171 1.31200 1.21300 0.85034 0.78573 0.76914 0.78121 1.19863 1.19854 1.19520 0.91869 0.91556 0.91906 0.92361 0.92622 0.92597 0.88913 0.92561 0.91919 0.86944 0.92476 0.90240 0.91776 0.90842 0.90775 0.91532 0.88956 0.91251 0.87573 0.91798 0.77230 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.10 -1.73 4.83 30.59 0.15 -1.59 16 3 C -0.11 -1.99 1.78 -11.54 -0.02 -2.01 16 4 H 0.11 1.65 6.52 -2.39 -0.02 1.64 16 5 C -0.14 -2.24 8.55 71.98 0.62 -1.63 16 6 C 0.52 12.75 4.47 87.65 0.39 13.15 16 7 O -0.58 -17.97 15.66 -3.03 -0.05 -18.01 16 8 N -0.60 -14.16 1.64 -817.65 -1.34 -15.50 16 9 C 0.08 1.85 4.69 86.44 0.41 2.25 16 10 C 0.07 1.99 2.51 45.09 0.11 2.10 16 11 H 0.09 3.25 5.65 -2.39 -0.01 3.24 16 12 C -0.10 -2.37 5.60 30.60 0.17 -2.19 16 13 C -0.13 -2.94 5.63 30.68 0.17 -2.77 16 14 C -0.10 -2.28 5.58 30.59 0.17 -2.11 16 15 C 0.08 1.82 2.84 44.95 0.13 1.95 16 16 H 0.10 2.25 8.05 -2.39 -0.02 2.23 16 17 C 0.08 1.90 5.33 86.30 0.46 2.36 16 18 N -0.51 -15.49 4.33 -850.93 -3.68 -19.18 16 19 C 0.06 1.81 4.73 85.56 0.40 2.22 16 20 C 0.45 20.02 7.47 87.66 0.65 20.67 16 21 O -0.61 -31.37 13.78 -3.07 -0.04 -31.42 16 22 N -0.57 -28.32 5.29 -306.99 -1.62 -29.94 16 23 C -0.33 -18.00 9.68 84.04 0.81 -17.18 16 24 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 26 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 27 Si 0.99 42.07 29.55 68.60 2.03 44.09 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 30 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.70 6.71 -2.39 -0.02 0.68 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.16 8.04 -2.38 -0.02 1.14 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.07 6.88 -2.38 -0.02 1.05 16 38 H 0.06 0.95 7.39 -2.39 -0.02 0.94 16 39 H 0.06 1.66 6.76 -2.39 -0.02 1.64 16 40 H 0.11 2.17 5.25 -2.39 -0.01 2.16 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.69 3.24 -2.39 -0.01 1.68 16 45 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.09 2.28 7.08 -2.39 -0.02 2.26 16 48 H 0.07 1.62 7.10 -2.38 -0.02 1.61 16 49 H 0.11 3.14 8.01 -2.39 -0.02 3.12 16 50 H 0.06 1.93 5.36 -2.39 -0.01 1.92 16 51 H 0.39 18.69 7.90 -92.71 -0.73 17.96 16 52 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -66.30 382.16 1.57 -64.73 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: 0.20 Total: 40.04 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 5.79 Total: 13.91 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -6.36 Total: -113.35 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.09 Total: -49.43 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -66.30 1.57 -64.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499543107.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.639 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds