Wall clock time and date at job start Tue Mar 31 2020 19:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08997 * 110.43952 * 307.54110 * 3 2 1 5 5 C 1.54894 * 110.48644 * 70.22805 * 3 2 1 6 6 C 1.54890 * 102.74958 * 156.61860 * 5 3 2 7 7 C 1.54275 * 104.19335 * 322.05475 * 6 5 3 8 8 C 1.53871 * 106.59848 * 23.61060 * 7 6 5 9 9 H 1.08997 * 110.07884 * 240.69142 * 8 7 6 10 10 C 1.50701 * 110.02810 * 119.28431 * 8 7 6 11 11 O 1.21286 * 119.99763 * 242.82662 * 10 8 7 12 12 N 1.34768 * 120.00354 * 62.83755 * 10 8 7 13 13 C 1.46503 * 119.99875 * 359.97438 * 12 10 8 14 14 C 1.46501 * 120.00549 * 179.97438 * 12 10 8 15 15 C 1.53932 * 113.73555 * 218.76597 * 14 12 10 16 16 N 1.48194 * 86.10067 * 221.95467 * 15 14 12 17 17 C 1.46892 * 111.07205 * 137.52118 * 16 15 14 18 18 C 1.50700 * 109.47517 * 70.56443 * 17 16 15 19 19 O 1.21288 * 119.99855 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00391 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00250 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00067 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00242 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99799 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99964 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47326 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47165 * 120.00125 * 25 23 21 28 28 H 1.48503 * 109.46982 * 239.99445 * 25 23 21 29 29 C 1.47964 * 90.79942 * 24.59861 * 16 15 14 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 33 33 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 34 34 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 35 35 H 1.09002 * 110.75085 * 274.92922 * 5 3 2 36 36 H 1.08999 * 110.75357 * 38.30373 * 5 3 2 37 37 H 1.08997 * 110.48705 * 203.38162 * 6 5 3 38 38 H 1.08996 * 110.59874 * 80.78551 * 6 5 3 39 39 H 1.09001 * 110.02885 * 264.32813 * 7 6 5 40 40 H 1.08999 * 110.02610 * 142.89671 * 7 6 5 41 41 H 1.08997 * 109.47361 * 90.00601 * 13 12 10 42 42 H 1.08998 * 109.47236 * 210.00534 * 13 12 10 43 43 H 1.09000 * 109.47237 * 330.00455 * 13 12 10 44 44 H 1.09001 * 112.93321 * 350.32894 * 14 12 10 45 45 H 1.08995 * 113.75936 * 336.22984 * 15 14 12 46 46 H 1.08998 * 113.76065 * 107.60442 * 15 14 12 47 47 H 1.09008 * 109.47264 * 190.56624 * 17 16 15 48 48 H 1.09004 * 109.47385 * 310.56196 * 17 16 15 49 49 H 0.97005 * 119.99531 * 0.02562 * 20 18 17 50 50 H 0.96992 * 119.99737 * 180.02562 * 24 23 21 51 51 H 1.08996 * 113.75750 * 221.09074 * 29 16 15 52 52 H 1.08990 * 113.75941 * 89.72018 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5800 2.0088 -0.8098 5 6 1.7578 2.1172 1.3654 6 6 2.8152 3.2481 1.4129 7 6 4.0701 2.6197 0.7724 8 6 3.5772 1.4717 -0.1259 9 1 3.9976 0.5248 0.2126 10 6 3.9732 1.7297 -1.5569 11 8 3.1190 1.8777 -2.4051 12 7 5.2763 1.7956 -1.8941 13 6 6.3081 1.6171 -0.8695 14 6 5.6613 2.0458 -3.2853 15 6 6.8880 1.2368 -3.7438 16 7 7.3318 2.4816 -4.4144 17 6 8.7709 2.7023 -4.2192 18 6 9.5477 1.6860 -5.0160 19 8 8.9602 0.8594 -5.6813 20 7 10.8952 1.6962 -4.9900 21 6 11.6018 0.7720 -5.7152 22 1 11.0787 0.0360 -6.3077 23 6 12.9910 0.7822 -5.6880 24 7 13.6275 1.6782 -4.9675 25 14 13.9538 -0.4766 -6.6768 26 1 13.0093 -1.3672 -7.3978 27 1 14.8218 0.2231 -7.6577 28 1 14.7958 -1.2869 -5.7604 29 6 6.5373 3.2980 -3.4702 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 0.7493 2.5300 1.3912 36 1 1.9090 1.4125 2.1831 37 1 3.0176 3.5380 2.4439 38 1 2.4819 4.1092 0.8337 39 1 4.7298 2.2302 1.5478 40 1 4.5956 3.3634 0.1733 41 1 6.5685 0.5613 -0.7961 42 1 7.1935 2.1916 -1.1414 43 1 5.9299 1.9657 0.0916 44 1 4.8188 1.9939 -3.9750 45 1 7.5373 0.9227 -2.9267 46 1 6.6476 0.4272 -4.4329 47 1 9.0335 3.7054 -4.5555 48 1 9.0144 2.5982 -3.1618 49 1 11.3650 2.3576 -4.4581 50 1 14.5972 1.6855 -4.9489 51 1 6.0171 4.1321 -3.9411 52 1 7.0837 3.5880 -2.5730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499742046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:55 Heat of formation + Delta-G solvation = -68.330526 kcal Electronic energy + Delta-G solvation = -29867.870509 eV Core-core repulsion = 25866.975357 eV Total energy + Delta-G solvation = -4000.895152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.02344 -40.86515 -39.58992 -38.35008 -36.24965 -35.87172 -34.02639 -33.32256 -31.67734 -30.06384 -28.60603 -27.95532 -27.34596 -27.03662 -25.31275 -23.76600 -22.31765 -21.42212 -20.97615 -20.48613 -20.00680 -19.80772 -18.13691 -17.86813 -17.74599 -16.79670 -16.62654 -16.54182 -16.31021 -15.71837 -15.67250 -15.56461 -15.36349 -14.86217 -14.64557 -14.27800 -14.07361 -13.99868 -13.86711 -13.65273 -13.58559 -13.53295 -13.22523 -13.11561 -12.89667 -12.81977 -12.62928 -12.42805 -12.24940 -12.14000 -12.05351 -11.84716 -11.77037 -11.65555 -11.52501 -11.50437 -11.39218 -11.25932 -10.72481 -10.36729 -10.03213 -9.78426 -9.70110 -8.48508 -5.96889 1.34945 1.40757 1.54556 1.56569 1.85441 2.02566 2.27853 2.80902 3.17742 3.22361 3.38897 3.49121 3.62382 3.65915 3.71416 4.03515 4.09270 4.16573 4.22138 4.25546 4.30200 4.37406 4.39051 4.44258 4.50683 4.51165 4.57130 4.65061 4.69846 4.72646 4.74616 4.76848 4.80552 4.94134 4.95602 4.98451 5.02495 5.14059 5.22045 5.26487 5.28605 5.29693 5.38486 5.40262 5.42158 5.48099 5.61271 5.83540 6.03295 6.36365 6.58496 7.11367 7.13013 7.53917 8.10121 8.69015 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.002000 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.466322 B =13998.764992 C =14185.303386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.081 4.081 4 H 0.062 0.938 5 C -0.112 4.112 6 C -0.124 4.124 7 C -0.114 4.114 8 C -0.105 4.105 9 H 0.115 0.885 10 C 0.514 3.486 11 O -0.582 6.582 12 N -0.602 5.602 13 C 0.055 3.945 14 C 0.124 3.876 15 C 0.014 3.986 16 N -0.480 5.480 17 C 0.027 3.973 18 C 0.439 3.561 19 O -0.620 6.620 20 N -0.572 5.572 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.918 5.918 25 Si 0.991 3.009 26 H -0.276 1.276 27 H -0.271 1.271 28 H -0.269 1.269 29 C 0.003 3.997 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.100 0.900 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.056 3.807 20.900 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.100 4.100 4 H 0.080 0.920 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.152 4.152 8 C -0.126 4.126 9 H 0.133 0.867 10 C 0.305 3.695 11 O -0.462 6.462 12 N -0.334 5.334 13 C -0.086 4.086 14 C 0.018 3.982 15 C -0.115 4.115 16 N -0.203 5.203 17 C -0.105 4.105 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.194 1.194 29 C -0.126 4.126 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.129 0.871 48 H 0.102 0.898 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.119 0.881 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.730 3.454 19.338 27.842 hybrid contribution 1.265 -0.435 -0.232 1.358 sum -18.464 3.019 19.106 26.741 Atomic orbital electron populations 1.21742 0.95312 1.01801 1.01782 1.21539 0.96582 0.95549 1.01501 1.21959 0.92349 0.96925 0.98762 0.91961 1.22561 0.99176 0.97464 0.95755 1.22368 0.94612 0.97672 1.01488 1.22260 0.98807 0.95761 0.98366 1.22122 0.98215 1.02358 0.89951 0.86704 1.21370 0.81484 0.74678 0.92015 1.90660 1.50654 1.51673 1.53235 1.47943 1.06581 1.70605 1.08274 1.22331 0.91490 1.02768 0.92051 1.22824 0.96359 0.95344 0.83629 1.24187 0.95416 0.94838 0.97094 1.68361 1.04036 1.04574 1.43327 1.22340 0.89616 0.99232 0.99265 1.20739 0.82624 0.87920 0.86055 1.90506 1.69783 1.43059 1.47305 1.41918 1.04939 1.30694 1.43397 1.19657 0.89491 1.11352 1.25665 0.90593 1.26011 0.97048 0.99744 0.98380 1.69666 1.09854 1.35633 1.40762 0.84894 0.77779 0.77777 0.78025 1.20058 1.19638 1.19382 1.24494 0.94917 0.97197 0.95976 0.92368 0.91389 0.94115 0.90267 0.94217 0.91214 0.89672 0.89449 0.92689 0.87878 0.91682 0.91771 0.90393 0.87105 0.87938 0.90108 0.91670 0.87103 0.89777 0.76894 0.91254 0.88130 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.79 71.98 0.70 -1.39 16 2 C -0.11 -1.75 5.28 30.60 0.16 -1.58 16 3 C -0.08 -1.31 2.18 -9.72 -0.02 -1.33 16 4 H 0.06 1.43 6.87 -2.39 -0.02 1.41 16 5 C -0.11 -1.18 5.67 31.89 0.18 -1.00 16 6 C -0.12 -1.21 6.83 31.67 0.22 -1.00 16 7 C -0.11 -1.14 4.51 31.32 0.14 -1.00 16 8 C -0.11 -1.59 2.11 -10.81 -0.02 -1.61 16 9 H 0.12 1.38 7.78 -2.39 -0.02 1.36 16 10 C 0.51 12.10 6.83 87.66 0.60 12.70 16 11 O -0.58 -18.95 14.88 -3.05 -0.05 -18.99 16 12 N -0.60 -12.84 3.07 -826.84 -2.54 -15.38 16 13 C 0.05 0.76 8.55 127.77 1.09 1.85 16 14 C 0.12 3.31 4.39 46.56 0.20 3.52 16 15 C 0.01 0.46 6.22 86.36 0.54 0.99 16 16 N -0.48 -15.89 5.95 -912.21 -5.42 -21.31 16 17 C 0.03 0.92 5.31 85.56 0.45 1.37 16 18 C 0.44 20.93 7.59 87.66 0.67 21.60 16 19 O -0.62 -34.96 15.13 -3.05 -0.05 -35.01 16 20 N -0.57 -29.13 5.29 -306.99 -1.62 -30.75 16 21 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -48.91 13.05 21.67 0.28 -48.63 16 25 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 C 0.00 0.08 7.49 86.41 0.65 0.73 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.76 7.55 -2.39 -0.02 0.74 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.91 8.02 -2.39 -0.02 0.89 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.73 8.06 -2.39 -0.02 0.71 16 36 H 0.08 0.65 7.97 -2.39 -0.02 0.63 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 0.51 7.59 -2.39 -0.02 0.49 16 40 H 0.06 0.76 7.01 -2.39 -0.02 0.74 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.02 6.35 -2.39 -0.02 1.01 16 43 H 0.11 0.92 4.17 -2.39 -0.01 0.91 16 44 H 0.10 3.29 7.22 -2.39 -0.02 3.27 16 45 H 0.08 2.36 6.48 -2.39 -0.02 2.35 16 46 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 47 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 48 H 0.08 2.32 7.70 -2.39 -0.02 2.30 16 49 H 0.40 18.98 7.90 -92.70 -0.73 18.25 16 50 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 51 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.10 1.82 6.49 -2.39 -0.02 1.81 16 Total: -1.00 -74.74 402.02 -0.34 -75.08 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.19 Total: 34.45 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.84 Total: 15.63 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -9.30 Total: -116.07 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -0.09 Total: -54.00 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -74.74 -0.34 -75.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499742046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.746 kcal (2) G-P(sol) polarization free energy of solvation -74.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds