Wall clock time and date at job start Tue Mar 31 2020 19:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47180 * 2 1 4 4 H 1.09002 * 110.01870 * 53.76104 * 3 2 1 5 5 C 1.54755 * 110.01536 * 292.37354 * 3 2 1 6 6 C 1.54887 * 103.96660 * 217.12592 * 5 3 2 7 7 C 1.54889 * 102.91396 * 37.92058 * 6 5 3 8 8 C 1.53873 * 110.03124 * 175.15205 * 3 2 1 9 9 H 1.09003 * 110.03409 * 238.56980 * 8 3 2 10 10 C 1.50696 * 110.07591 * 359.97438 * 8 3 2 11 11 O 1.21286 * 120.00294 * 83.18078 * 10 8 3 12 12 N 1.34776 * 120.00098 * 263.18160 * 10 8 3 13 13 C 1.46507 * 119.99901 * 5.00517 * 12 10 8 14 14 C 1.46500 * 120.00189 * 185.00741 * 12 10 8 15 15 C 1.53944 * 113.73264 * 218.76663 * 14 12 10 16 16 N 1.48187 * 86.10047 * 221.95405 * 15 14 12 17 17 C 1.46902 * 111.07008 * 137.51828 * 16 15 14 18 18 C 1.50693 * 109.46780 * 90.56697 * 17 16 15 19 19 O 1.21294 * 120.00266 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00160 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00667 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99355 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99604 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00228 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47065 * 90.00134 * 25 23 21 27 27 H 1.48495 * 109.47264 * 209.99785 * 25 23 21 28 28 H 1.48492 * 109.47224 * 330.00436 * 25 23 21 29 29 C 1.47968 * 90.79724 * 24.59869 * 16 15 14 30 30 H 1.09000 * 109.47240 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47229 * 300.00319 * 1 2 3 32 32 H 1.09003 * 109.47223 * 60.00058 * 1 2 3 33 33 H 1.08999 * 109.47638 * 240.00008 * 2 1 3 34 34 H 1.09003 * 109.47223 * 119.99942 * 2 1 3 35 35 H 1.09005 * 110.68993 * 98.47714 * 5 3 2 36 36 H 1.09002 * 110.50412 * 335.68497 * 5 3 2 37 37 H 1.09003 * 110.75332 * 279.52057 * 6 5 3 38 38 H 1.09001 * 110.75668 * 156.32966 * 6 5 3 39 39 H 1.09006 * 110.48163 * 80.64335 * 7 6 5 40 40 H 1.08998 * 110.48912 * 203.15351 * 7 6 5 41 41 H 1.08998 * 109.46986 * 84.72489 * 13 12 10 42 42 H 1.09002 * 109.47088 * 204.72611 * 13 12 10 43 43 H 1.09004 * 109.46898 * 324.72190 * 13 12 10 44 44 H 1.08997 * 112.93749 * 350.32909 * 14 12 10 45 45 H 1.09002 * 113.75626 * 336.23543 * 15 14 12 46 46 H 1.09000 * 113.75593 * 107.59822 * 15 14 12 47 47 H 1.08994 * 109.46843 * 210.56594 * 17 16 15 48 48 H 1.08998 * 109.47184 * 330.56856 * 17 16 15 49 49 H 0.97008 * 119.99719 * 359.97438 * 20 18 17 50 50 H 0.96996 * 120.00062 * 179.97438 * 24 23 21 51 51 H 1.08994 * 113.75494 * 221.08332 * 29 16 15 52 52 H 1.09005 * 113.85848 * 89.73446 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5936 1.9961 0.8260 5 6 1.6947 2.1264 -1.3446 6 6 2.9248 3.0216 -1.6354 7 6 4.1096 2.1507 -1.1486 8 6 3.5738 1.4593 0.1222 9 1 3.8718 2.0217 1.0071 10 6 4.1015 0.0502 0.2048 11 8 4.2806 -0.5908 -0.8091 12 7 4.3745 -0.4978 1.4055 13 6 4.0559 0.2339 2.6342 14 6 4.9899 -1.8251 1.4821 15 6 4.4399 -2.6981 2.6246 16 7 5.8470 -3.0983 2.8605 17 6 6.1542 -3.1273 4.2967 18 6 5.8752 -4.5041 4.8422 19 8 5.4608 -5.3753 4.1070 20 7 6.0861 -4.7675 6.1471 21 6 5.8318 -6.0199 6.6436 22 1 5.4628 -6.7955 5.9889 23 6 6.0498 -6.2914 7.9887 24 7 5.8065 -7.4920 8.4644 25 14 6.6901 -4.9504 9.1205 26 1 5.5447 -4.2123 9.7109 27 1 7.4970 -5.5626 10.2064 28 1 7.5374 -4.0101 8.3440 29 6 6.3293 -1.8443 2.2404 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.7950 2.7341 -1.2477 36 1 1.5704 1.3818 -2.1309 37 1 2.8694 3.9504 -1.0678 38 1 3.0094 3.2271 -2.7026 39 1 4.3738 1.4098 -1.9033 40 1 4.9703 2.7758 -0.9112 41 1 3.0144 0.0573 2.9025 42 1 4.7025 -0.1116 3.4408 43 1 4.2140 1.3003 2.4733 44 1 5.0238 -2.3339 0.5187 45 1 4.0029 -2.1259 3.4431 46 1 3.8010 -3.5136 2.2856 47 1 7.2054 -2.8826 4.4484 48 1 5.5326 -2.3979 4.8161 49 1 6.4179 -4.0709 6.7350 50 1 5.9591 -7.6818 9.4033 51 1 7.1973 -1.9791 1.5952 52 1 6.4469 -1.0209 2.9449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499742047.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:59 Heat of formation + Delta-G solvation = -34.605362 kcal Electronic energy + Delta-G solvation = -30163.142305 eV Core-core repulsion = 26163.709586 eV Total energy + Delta-G solvation = -3999.432719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19603 -39.88027 -38.08727 -37.39880 -35.17916 -33.92140 -33.44716 -31.69168 -30.64858 -29.32062 -27.90300 -27.31495 -26.18740 -25.56408 -23.78970 -23.09271 -21.68436 -20.86840 -19.50722 -19.39852 -18.76227 -18.30983 -17.49995 -16.58519 -16.38427 -16.12760 -15.66927 -15.28440 -15.11361 -14.87509 -14.65807 -14.41959 -13.88891 -13.73741 -13.51081 -13.42890 -13.15144 -13.00063 -12.86106 -12.67003 -12.61850 -12.47370 -12.27504 -12.16525 -11.89964 -11.66499 -11.51746 -11.38149 -11.23052 -11.19632 -11.08177 -10.95709 -10.81747 -10.74920 -10.71241 -10.60803 -9.97434 -9.83476 -9.56331 -8.88040 -8.82927 -8.32326 -8.17341 -6.30529 -3.81912 2.40415 2.67338 3.01060 3.04699 3.13634 3.73702 3.86795 4.04373 4.09679 4.19468 4.21773 4.42575 4.51443 4.62384 4.74300 4.79823 4.85403 4.88434 4.93677 5.01285 5.10674 5.16159 5.17437 5.21123 5.23779 5.26868 5.30320 5.35060 5.40686 5.49091 5.49626 5.50686 5.55416 5.65343 5.69829 5.73809 5.78649 5.82354 5.86434 5.91875 5.97685 6.01267 6.03099 6.12129 6.29990 6.42021 6.98618 7.16109 7.58492 7.98169 8.14921 8.61020 8.96209 9.42911 9.84803 10.82789 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.002166 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.205160 B =12925.269377 C =13093.135853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.074 4.074 4 H 0.078 0.922 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.115 4.115 9 H 0.092 0.908 10 C 0.529 3.471 11 O -0.535 6.535 12 N -0.609 5.609 13 C 0.071 3.929 14 C 0.117 3.883 15 C 0.002 3.998 16 N -0.444 5.444 17 C 0.011 3.989 18 C 0.455 3.545 19 O -0.555 6.555 20 N -0.594 5.594 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.013 4.013 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.130 0.870 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.095 0.905 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 26.820 -14.291 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C -0.093 4.093 4 H 0.097 0.903 5 C -0.155 4.155 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.136 4.136 9 H 0.110 0.890 10 C 0.318 3.682 11 O -0.412 6.412 12 N -0.342 5.342 13 C -0.071 4.071 14 C 0.013 3.987 15 C -0.128 4.128 16 N -0.166 5.166 17 C -0.122 4.122 18 C 0.240 3.760 19 O -0.435 6.435 20 N -0.234 5.234 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.143 4.143 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.117 0.883 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.113 0.887 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.019 25.067 -15.360 30.009 hybrid contribution 0.378 1.680 1.933 2.589 sum -5.641 26.748 -13.427 30.456 Atomic orbital electron populations 1.21750 0.95507 1.01788 1.01581 1.21861 0.96340 0.95628 1.03039 1.21782 0.91910 0.96910 0.98700 0.90347 1.22532 0.97760 0.98518 0.96657 1.22477 0.94586 0.97939 1.01109 1.22371 0.97730 0.98812 0.96201 1.22151 0.97031 0.93391 1.01017 0.88989 1.20474 0.76275 0.88640 0.82815 1.90684 1.52688 1.63194 1.34594 1.47966 1.61722 1.18250 1.06226 1.21864 1.01372 0.96827 0.87086 1.23145 0.92219 0.82386 1.00951 1.24482 0.93171 0.98322 0.96794 1.68380 1.06108 1.30421 1.11723 1.22492 1.02123 0.97444 0.90127 1.19563 0.84586 0.89274 0.82584 1.90576 1.48342 1.47307 1.57303 1.42223 1.60553 1.12573 1.08092 1.19427 1.41596 0.87756 0.94417 0.86308 1.25037 0.97852 0.96581 0.96796 1.69621 1.47980 1.19594 1.15049 0.86668 0.79443 0.81813 0.81423 1.19712 1.20177 1.19558 1.24499 0.98940 0.92614 0.98264 0.92671 0.92907 0.92664 0.90744 0.91787 0.91481 0.91095 0.91526 0.91310 0.89663 0.91490 0.92085 0.90798 0.90757 0.85232 0.90968 0.88316 0.89197 0.92468 0.79843 0.91646 0.88708 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.77 37.16 0.36 -0.76 16 2 C -0.13 -1.16 4.12 -26.73 -0.11 -1.27 16 3 C -0.07 -0.53 2.94 -89.24 -0.26 -0.79 16 4 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 5 C -0.12 -0.77 5.56 -24.81 -0.14 -0.91 16 6 C -0.12 -0.75 6.89 -24.74 -0.17 -0.92 16 7 C -0.11 -0.86 6.32 -25.07 -0.16 -1.02 16 8 C -0.11 -0.88 2.76 -90.66 -0.25 -1.13 16 9 H 0.09 0.54 5.83 -51.93 -0.30 0.24 16 10 C 0.53 5.69 4.49 -10.99 -0.05 5.64 16 11 O -0.54 -7.72 14.38 5.55 0.08 -7.64 16 12 N -0.61 -5.98 2.74 -175.26 -0.48 -6.46 16 13 C 0.07 0.49 8.84 59.85 0.53 1.01 16 14 C 0.12 1.41 4.41 -69.62 -0.31 1.11 16 15 C 0.00 0.03 7.38 -2.63 -0.02 0.01 16 16 N -0.44 -7.04 5.65 -239.67 -1.35 -8.39 16 17 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 18 C 0.45 10.43 7.83 -10.99 -0.09 10.34 16 19 O -0.55 -15.27 16.01 5.55 0.09 -15.18 16 20 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 21 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 24 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 25 Si 0.88 19.28 27.74 -169.99 -4.71 14.56 16 26 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.01 16 29 C -0.01 -0.15 7.44 -2.76 -0.02 -0.18 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.38 7.50 -51.93 -0.39 -0.01 16 33 H 0.07 0.83 6.97 -51.93 -0.36 0.47 16 34 H 0.06 0.62 6.78 -51.93 -0.35 0.27 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.54 7.77 -51.93 -0.40 0.14 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.85 6.94 -51.93 -0.36 0.48 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.39 8.04 -51.93 -0.42 -0.03 16 42 H 0.07 0.49 6.15 -51.93 -0.32 0.17 16 43 H 0.07 0.36 5.88 -51.93 -0.31 0.05 16 44 H 0.13 1.83 7.20 -51.93 -0.37 1.45 16 45 H 0.07 0.88 6.05 -51.93 -0.31 0.56 16 46 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 47 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16 48 H 0.06 0.78 7.39 -51.93 -0.38 0.39 16 49 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 50 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 52 H 0.07 0.69 6.71 -51.93 -0.35 0.34 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -34.77 398.02 -9.27 -44.03 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.65 Total: 8.93 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.95 Total: 3.50 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -1.11 Total: -54.20 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.17 Total: -22.82 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.77 -9.27 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499742047.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.428 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds