Wall clock time and date at job start Tue Mar 31 2020 19:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46948 * 2 1 4 4 H 1.09003 * 110.81467 * 51.65763 * 3 2 1 5 5 C 1.54884 * 110.75237 * 288.32527 * 3 2 1 6 6 C 1.54272 * 104.19453 * 203.74389 * 5 3 2 7 7 C 1.53877 * 106.59637 * 23.60926 * 6 5 3 8 8 C 1.54264 * 106.59933 * 0.02562 * 7 6 5 9 9 H 1.08991 * 110.48909 * 95.19870 * 8 7 6 10 10 C 1.50707 * 110.48467 * 217.71522 * 8 7 6 11 11 O 1.21273 * 120.00130 * 94.45756 * 10 8 7 12 12 N 1.34775 * 119.99276 * 274.45827 * 10 8 7 13 13 C 1.46498 * 120.00385 * 354.78181 * 12 10 8 14 14 C 1.46506 * 119.99504 * 174.78312 * 12 10 8 15 15 C 1.53519 * 114.16830 * 119.99983 * 14 12 10 16 16 N 1.47485 * 87.92845 * 87.62134 * 15 14 12 17 17 C 1.46904 * 110.99445 * 138.70116 * 16 15 14 18 18 C 1.50701 * 109.46895 * 169.99873 * 17 16 15 19 19 O 1.21298 * 120.00215 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00494 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00491 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00086 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99682 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00130 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99490 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47099 * 179.97438 * 25 23 21 27 27 H 1.48508 * 109.47124 * 299.99834 * 25 23 21 28 28 H 1.48499 * 109.47511 * 59.99812 * 25 23 21 29 29 C 1.47473 * 87.83834 * 27.01085 * 16 15 14 30 30 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47749 * 300.00164 * 1 2 3 32 32 H 1.08999 * 109.46790 * 60.00627 * 1 2 3 33 33 H 1.08995 * 109.47749 * 239.99836 * 2 1 3 34 34 H 1.08999 * 109.46790 * 119.99372 * 2 1 3 35 35 H 1.08997 * 110.49099 * 85.06835 * 5 3 2 36 36 H 1.08999 * 110.48752 * 322.41905 * 5 3 2 37 37 H 1.08996 * 110.03317 * 264.32481 * 6 5 3 38 38 H 1.09001 * 110.07350 * 142.91446 * 6 5 3 39 39 H 1.08998 * 110.02884 * 240.71317 * 7 6 5 40 40 H 1.09003 * 110.03043 * 119.28485 * 7 6 5 41 41 H 1.08999 * 109.47316 * 275.08007 * 13 12 10 42 42 H 1.09002 * 109.46943 * 35.08323 * 13 12 10 43 43 H 1.09007 * 109.47039 * 155.08113 * 13 12 10 44 44 H 1.08999 * 113.25942 * 347.04796 * 14 12 10 45 45 H 1.08995 * 113.47548 * 332.85911 * 15 14 12 46 46 H 1.08992 * 113.47481 * 202.38594 * 15 14 12 47 47 H 1.08999 * 109.47193 * 50.00204 * 17 16 15 48 48 H 1.08992 * 109.47527 * 289.99595 * 17 16 15 49 49 H 0.97000 * 119.99631 * 359.97438 * 20 18 17 50 50 H 0.96991 * 120.00231 * 0.02562 * 24 23 21 51 51 H 1.08997 * 113.48126 * 87.75193 * 29 16 15 52 52 H 1.09001 * 113.47978 * 218.22057 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5732 2.0184 0.7991 5 6 1.7936 2.1118 -1.3749 6 6 2.8429 3.2408 -1.4396 7 6 3.9808 2.8386 -0.4850 8 6 3.5836 1.4789 0.1259 9 1 4.0341 0.6615 -0.4371 10 6 3.9958 1.4106 1.5738 11 8 3.2044 1.7053 2.4442 12 7 5.2441 1.0220 1.9014 13 6 6.1635 0.5570 0.8599 14 6 5.6815 1.0648 3.2989 15 6 6.1023 -0.2977 3.8678 16 7 7.4591 -0.0332 3.3537 17 6 8.4802 -0.4519 4.3233 18 6 9.8399 -0.3977 3.6757 19 8 9.9477 -0.0455 2.5200 20 7 10.9361 -0.7416 4.3803 21 6 12.1732 -0.6919 3.7913 22 1 12.2692 -0.3775 2.7626 23 6 13.3033 -1.0460 4.5181 24 7 13.1865 -1.4280 5.7699 25 14 14.9889 -0.9775 3.7158 26 1 16.0212 -1.4004 4.6960 27 1 15.0163 -1.8884 2.5432 28 1 15.2692 0.4111 3.2705 29 6 7.1668 1.4065 3.4825 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.7859 2.5244 -1.4233 36 1 1.9530 1.3962 -2.1815 37 1 2.3989 4.1821 -1.1156 38 1 3.2250 3.3387 -2.4557 39 1 4.0890 3.5847 0.3021 40 1 4.9149 2.7404 -1.0381 41 1 5.9938 -0.5033 0.6724 42 1 5.9893 1.1206 -0.0566 43 1 7.1917 0.7077 1.1893 44 1 5.0076 1.6288 3.9438 45 1 5.6110 -1.1411 3.3828 46 1 6.0522 -0.3482 4.9554 47 1 8.2741 -1.4708 4.6508 48 1 8.4606 0.2173 5.1834 49 1 10.8499 -1.0237 5.3044 50 1 12.3113 -1.4632 6.1866 51 1 7.4008 1.8108 4.4674 52 1 7.5776 2.0074 2.6712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499742048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:02 Heat of formation + Delta-G solvation = -41.959314 kcal Electronic energy + Delta-G solvation = -29956.798965 eV Core-core repulsion = 25957.047355 eV Total energy + Delta-G solvation = -3999.751610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06885 -39.83590 -38.08342 -37.46961 -34.94448 -34.23393 -33.43940 -31.22585 -30.46249 -29.14990 -27.91416 -27.04975 -25.99467 -25.24574 -23.80685 -23.08091 -21.81756 -20.43982 -19.74749 -19.70261 -18.60544 -17.93306 -17.42535 -16.61504 -16.29525 -15.88083 -15.47436 -15.38155 -15.01334 -14.75291 -14.66302 -14.34353 -13.81754 -13.71697 -13.56186 -13.40808 -13.34772 -13.14964 -12.91492 -12.49384 -12.36419 -12.18751 -12.07837 -11.92828 -11.64413 -11.50638 -11.34489 -11.26399 -11.05350 -10.96796 -10.91372 -10.80766 -10.77834 -10.73079 -10.64813 -10.21798 -9.87078 -9.78191 -9.54496 -8.89440 -8.66689 -8.28259 -8.04046 -6.75954 -3.89145 2.48646 2.84535 3.30002 3.33700 3.54007 3.82636 3.92908 4.13026 4.27063 4.28763 4.33796 4.43201 4.70208 4.78674 4.85021 4.88467 4.96218 5.07910 5.09635 5.15290 5.21511 5.25401 5.29180 5.30459 5.32543 5.37882 5.42122 5.51713 5.54238 5.58111 5.60253 5.62151 5.64378 5.69753 5.77211 5.79172 5.84657 5.86471 5.89197 5.97501 6.00009 6.04771 6.14182 6.23126 6.38827 6.54347 7.01036 7.36597 7.79472 8.07132 8.08967 8.59725 8.79975 9.47134 9.88288 10.67494 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002059 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.846725 B =13593.157052 C =14108.781341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.075 4.075 4 H 0.092 0.908 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.110 4.110 9 H 0.097 0.903 10 C 0.524 3.476 11 O -0.544 6.544 12 N -0.588 5.588 13 C 0.074 3.926 14 C 0.116 3.884 15 C -0.017 4.017 16 N -0.437 5.437 17 C 0.007 3.993 18 C 0.450 3.550 19 O -0.570 6.570 20 N -0.579 5.579 21 C -0.381 4.381 22 H 0.098 0.902 23 C -0.011 4.011 24 N -0.902 5.902 25 Si 1.091 2.909 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.284 1.284 29 C -0.006 4.006 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.375 0.625 50 H 0.261 0.739 51 H 0.079 0.921 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.764 5.523 -9.727 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.094 4.094 4 H 0.110 0.890 5 C -0.156 4.156 6 C -0.160 4.160 7 C -0.148 4.148 8 C -0.132 4.132 9 H 0.115 0.885 10 C 0.312 3.688 11 O -0.422 6.422 12 N -0.319 5.319 13 C -0.068 4.068 14 C 0.011 3.989 15 C -0.148 4.148 16 N -0.159 5.159 17 C -0.125 4.125 18 C 0.235 3.765 19 O -0.453 6.453 20 N -0.217 5.217 21 C -0.510 4.510 22 H 0.116 0.884 23 C -0.213 4.213 24 N -0.541 5.541 25 Si 0.917 3.083 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.136 4.136 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.078 0.922 49 H 0.207 0.793 50 H 0.072 0.928 51 H 0.097 0.903 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.180 5.349 -10.437 24.210 hybrid contribution -1.619 0.174 1.253 2.055 sum -22.799 5.523 -9.184 25.192 Atomic orbital electron populations 1.21743 0.95686 1.01442 1.01817 1.21512 0.96132 0.95851 1.01857 1.22108 0.92468 0.96731 0.98111 0.88974 1.22436 0.98918 0.97413 0.96873 1.22108 0.95757 0.98800 0.99338 1.22045 0.99004 0.94991 0.98783 1.22255 0.98012 1.00129 0.92756 0.88461 1.20600 0.80994 0.75919 0.91242 1.90652 1.51061 1.49536 1.50901 1.47452 1.13031 1.64289 1.07107 1.21984 0.96262 0.99026 0.89527 1.22029 0.95888 0.97390 0.83596 1.24337 0.91828 0.99107 0.99479 1.68856 1.00741 1.06674 1.39619 1.22515 0.93847 1.01851 0.94296 1.19572 0.84641 0.84573 0.87703 1.90509 1.86057 1.51472 1.17258 1.41955 1.06508 1.60103 1.13168 1.20510 0.83601 1.46544 1.00356 0.88383 1.26503 1.04007 0.95154 0.95621 1.70898 1.26392 1.44857 1.11962 0.83134 0.73319 0.76927 0.74906 1.20427 1.21004 1.21045 1.24299 0.93877 0.92902 1.02531 0.92939 0.92661 0.92736 0.92020 0.92047 0.91430 0.91421 0.91654 0.91533 0.91389 0.90911 0.92619 0.91948 0.87744 0.87092 0.89507 0.90534 0.89466 0.92227 0.79261 0.92812 0.90299 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.81 37.16 0.36 -0.75 16 2 C -0.12 -0.98 5.43 -26.73 -0.15 -1.12 16 3 C -0.08 -0.67 2.11 -88.61 -0.19 -0.86 16 4 H 0.09 1.01 7.26 -51.93 -0.38 0.63 16 5 C -0.12 -0.83 5.69 -25.07 -0.14 -0.98 16 6 C -0.12 -0.86 6.80 -25.61 -0.17 -1.04 16 7 C -0.11 -0.93 6.06 -25.61 -0.16 -1.08 16 8 C -0.11 -1.04 1.73 -90.10 -0.16 -1.20 16 9 H 0.10 0.83 6.87 -51.93 -0.36 0.48 16 10 C 0.52 6.52 6.73 -10.98 -0.07 6.44 16 11 O -0.54 -8.35 15.29 5.56 0.09 -8.27 16 12 N -0.59 -7.22 3.11 -173.61 -0.54 -7.76 16 13 C 0.07 0.87 9.03 59.85 0.54 1.41 16 14 C 0.12 1.46 4.65 -67.71 -0.31 1.15 16 15 C -0.02 -0.21 7.31 -7.53 -0.06 -0.27 16 16 N -0.44 -6.80 4.29 -246.09 -1.06 -7.86 16 17 C 0.01 0.12 5.30 -4.97 -0.03 0.09 16 18 C 0.45 10.47 7.85 -10.99 -0.09 10.39 16 19 O -0.57 -15.28 16.01 5.54 0.09 -15.20 16 20 N -0.58 -14.47 5.28 -10.96 -0.06 -14.52 16 21 C -0.38 -10.66 9.68 -14.93 -0.14 -10.81 16 22 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 23 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 24 N -0.90 -25.24 13.68 55.50 0.76 -24.48 16 25 Si 1.09 24.21 29.92 -169.99 -5.09 19.13 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 C -0.01 -0.09 6.72 -7.54 -0.05 -0.14 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.35 7.65 -51.93 -0.40 -0.04 16 33 H 0.06 0.46 7.99 -51.93 -0.41 0.05 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.07 0.43 7.93 -51.93 -0.41 0.02 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.65 7.83 -51.93 -0.41 0.25 16 40 H 0.07 0.55 7.53 -51.93 -0.39 0.16 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.59 5.87 -51.93 -0.30 0.29 16 43 H 0.10 1.52 5.51 -51.93 -0.29 1.24 16 44 H 0.11 1.40 7.33 -51.93 -0.38 1.02 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 47 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 48 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 49 H 0.37 8.65 6.73 -40.82 -0.27 8.38 16 50 H 0.26 7.01 6.77 -40.82 -0.28 6.73 16 51 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 52 H 0.09 1.39 7.34 -51.93 -0.38 1.01 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -33.36 404.86 -9.41 -42.77 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -8.80 Total: 9.22 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.90 Total: 0.86 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.89 Total: -54.61 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.36 -9.41 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499742048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.812 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds