Wall clock time and date at job start Tue Mar 31 2020 19:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46948 * 2 1 4 4 H 1.09003 * 110.81467 * 51.65763 * 3 2 1 5 5 C 1.54884 * 110.75237 * 288.32527 * 3 2 1 6 6 C 1.54272 * 104.19453 * 203.74389 * 5 3 2 7 7 C 1.53877 * 106.59637 * 23.60926 * 6 5 3 8 8 C 1.54264 * 106.59933 * 0.02562 * 7 6 5 9 9 H 1.08991 * 110.48909 * 95.19870 * 8 7 6 10 10 C 1.50707 * 110.48467 * 217.71522 * 8 7 6 11 11 O 1.21273 * 120.00130 * 94.45756 * 10 8 7 12 12 N 1.34775 * 119.99276 * 274.45827 * 10 8 7 13 13 C 1.46498 * 120.00385 * 354.78181 * 12 10 8 14 14 C 1.46506 * 119.99504 * 174.78312 * 12 10 8 15 15 C 1.53519 * 114.16830 * 119.99983 * 14 12 10 16 16 N 1.47485 * 87.92845 * 87.62134 * 15 14 12 17 17 C 1.46904 * 110.99445 * 138.70116 * 16 15 14 18 18 C 1.50701 * 109.46895 * 169.99873 * 17 16 15 19 19 O 1.21298 * 120.00215 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00494 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00491 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00086 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99682 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00130 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99490 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47099 * 179.97438 * 25 23 21 27 27 H 1.48508 * 109.47124 * 299.99834 * 25 23 21 28 28 H 1.48499 * 109.47511 * 59.99812 * 25 23 21 29 29 C 1.47473 * 87.83834 * 27.01085 * 16 15 14 30 30 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47749 * 300.00164 * 1 2 3 32 32 H 1.08999 * 109.46790 * 60.00627 * 1 2 3 33 33 H 1.08995 * 109.47749 * 239.99836 * 2 1 3 34 34 H 1.08999 * 109.46790 * 119.99372 * 2 1 3 35 35 H 1.08997 * 110.49099 * 85.06835 * 5 3 2 36 36 H 1.08999 * 110.48752 * 322.41905 * 5 3 2 37 37 H 1.08996 * 110.03317 * 264.32481 * 6 5 3 38 38 H 1.09001 * 110.07350 * 142.91446 * 6 5 3 39 39 H 1.08998 * 110.02884 * 240.71317 * 7 6 5 40 40 H 1.09003 * 110.03043 * 119.28485 * 7 6 5 41 41 H 1.08999 * 109.47316 * 275.08007 * 13 12 10 42 42 H 1.09002 * 109.46943 * 35.08323 * 13 12 10 43 43 H 1.09007 * 109.47039 * 155.08113 * 13 12 10 44 44 H 1.08999 * 113.25942 * 347.04796 * 14 12 10 45 45 H 1.08995 * 113.47548 * 332.85911 * 15 14 12 46 46 H 1.08992 * 113.47481 * 202.38594 * 15 14 12 47 47 H 1.08999 * 109.47193 * 50.00204 * 17 16 15 48 48 H 1.08992 * 109.47527 * 289.99595 * 17 16 15 49 49 H 0.97000 * 119.99631 * 359.97438 * 20 18 17 50 50 H 0.96991 * 120.00231 * 0.02562 * 24 23 21 51 51 H 1.08997 * 113.48126 * 87.75193 * 29 16 15 52 52 H 1.09001 * 113.47978 * 218.22057 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5732 2.0184 0.7991 5 6 1.7936 2.1118 -1.3749 6 6 2.8429 3.2408 -1.4396 7 6 3.9808 2.8386 -0.4850 8 6 3.5836 1.4789 0.1259 9 1 4.0341 0.6615 -0.4371 10 6 3.9958 1.4106 1.5738 11 8 3.2044 1.7053 2.4442 12 7 5.2441 1.0220 1.9014 13 6 6.1635 0.5570 0.8599 14 6 5.6815 1.0648 3.2989 15 6 6.1023 -0.2977 3.8678 16 7 7.4591 -0.0332 3.3537 17 6 8.4802 -0.4519 4.3233 18 6 9.8399 -0.3977 3.6757 19 8 9.9477 -0.0455 2.5200 20 7 10.9361 -0.7416 4.3803 21 6 12.1732 -0.6919 3.7913 22 1 12.2692 -0.3775 2.7626 23 6 13.3033 -1.0460 4.5181 24 7 13.1865 -1.4280 5.7699 25 14 14.9889 -0.9775 3.7158 26 1 16.0212 -1.4004 4.6960 27 1 15.0163 -1.8884 2.5432 28 1 15.2692 0.4111 3.2705 29 6 7.1668 1.4065 3.4825 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.7859 2.5244 -1.4233 36 1 1.9530 1.3962 -2.1815 37 1 2.3989 4.1821 -1.1156 38 1 3.2250 3.3387 -2.4557 39 1 4.0890 3.5847 0.3021 40 1 4.9149 2.7404 -1.0381 41 1 5.9938 -0.5033 0.6724 42 1 5.9893 1.1206 -0.0566 43 1 7.1917 0.7077 1.1893 44 1 5.0076 1.6288 3.9438 45 1 5.6110 -1.1411 3.3828 46 1 6.0522 -0.3482 4.9554 47 1 8.2741 -1.4708 4.6508 48 1 8.4606 0.2173 5.1834 49 1 10.8499 -1.0237 5.3044 50 1 12.3113 -1.4632 6.1866 51 1 7.4008 1.8108 4.4674 52 1 7.5776 2.0074 2.6712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499742048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:01 Heat of formation + Delta-G solvation = -63.736179 kcal Electronic energy + Delta-G solvation = -29957.743281 eV Core-core repulsion = 25957.047355 eV Total energy + Delta-G solvation = -4000.695926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12499 -40.87913 -39.79700 -38.40446 -36.37356 -35.91353 -34.08739 -33.17580 -31.70080 -30.04352 -28.54247 -28.13078 -27.20512 -26.76485 -25.27176 -23.92225 -22.65773 -21.49588 -21.12427 -20.56972 -19.96513 -19.58496 -18.47168 -18.09861 -17.48073 -17.12002 -16.71128 -16.37807 -16.12293 -15.87527 -15.86311 -15.45401 -15.35218 -15.06161 -14.75523 -14.35645 -14.30460 -14.10979 -13.87236 -13.57214 -13.48352 -13.35348 -13.07017 -12.95247 -12.83718 -12.74217 -12.63761 -12.25386 -12.18896 -11.97075 -11.96034 -11.92502 -11.87250 -11.59261 -11.50342 -11.49529 -11.33488 -11.29001 -10.78845 -10.43504 -10.09671 -9.82218 -9.67982 -8.91795 -6.05571 1.51160 1.52870 1.54153 1.82082 1.88858 2.02409 2.39431 2.71342 3.16190 3.24024 3.35027 3.40604 3.61298 3.64205 3.70346 4.01101 4.03676 4.13019 4.19918 4.27102 4.30822 4.33808 4.38724 4.39427 4.44982 4.48038 4.52406 4.58006 4.62918 4.65880 4.71559 4.73334 4.76484 4.81240 4.94531 5.02586 5.10101 5.12075 5.20394 5.21861 5.23498 5.26674 5.38587 5.41429 5.53546 5.58775 5.59520 5.85388 5.97389 6.38484 6.58825 6.76614 7.10351 7.45927 7.95336 8.55965 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002059 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.846725 B =13593.157052 C =14108.781341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.074 4.074 4 H 0.067 0.933 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.108 4.108 9 H 0.111 0.889 10 C 0.522 3.478 11 O -0.577 6.577 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.121 3.879 15 C -0.006 4.006 16 N -0.460 5.460 17 C 0.020 3.980 18 C 0.448 3.552 19 O -0.609 6.609 20 N -0.591 5.591 21 C -0.407 4.407 22 H 0.073 0.927 23 C -0.045 4.045 24 N -0.918 5.918 25 Si 1.133 2.867 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.273 1.273 29 C -0.005 4.005 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.086 0.914 49 H 0.383 0.617 50 H 0.259 0.741 51 H 0.093 0.907 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.701 5.410 -10.620 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.093 4.093 4 H 0.086 0.914 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.148 4.148 8 C -0.130 4.130 9 H 0.129 0.871 10 C 0.312 3.688 11 O -0.457 6.457 12 N -0.320 5.320 13 C -0.060 4.060 14 C 0.015 3.985 15 C -0.136 4.136 16 N -0.183 5.183 17 C -0.112 4.112 18 C 0.236 3.764 19 O -0.494 6.494 20 N -0.231 5.231 21 C -0.536 4.536 22 H 0.091 0.909 23 C -0.243 4.243 24 N -0.558 5.558 25 Si 0.953 3.047 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.198 1.198 29 C -0.135 4.135 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.131 0.869 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.104 0.896 49 H 0.217 0.783 50 H 0.070 0.930 51 H 0.111 0.889 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.144 5.231 -11.320 25.414 hybrid contribution -1.412 0.236 1.524 2.091 sum -23.556 5.468 -9.796 26.091 Atomic orbital electron populations 1.21728 0.94946 1.01883 1.01933 1.21500 0.96816 0.95403 1.01458 1.22061 0.91781 0.96891 0.98604 0.91447 1.22420 0.99359 0.97446 0.95770 1.22114 0.95185 0.98749 0.99715 1.22064 1.00219 0.93814 0.98656 1.22335 0.98607 1.01230 0.90783 0.87103 1.21133 0.80491 0.74908 0.92278 1.90634 1.51909 1.51019 1.52123 1.47554 1.13189 1.64048 1.07183 1.21906 0.94467 0.99565 0.90111 1.21975 0.95024 0.97501 0.84003 1.24352 0.89569 0.98832 1.00867 1.68840 1.01712 1.07788 1.39926 1.22410 0.90313 1.03854 0.94623 1.20720 0.86391 0.82068 0.87223 1.90483 1.87108 1.52541 1.19232 1.42022 1.06328 1.61001 1.13716 1.20488 0.85486 1.47899 0.99745 0.90922 1.27804 1.06961 0.94003 0.95486 1.70968 1.26504 1.45832 1.12495 0.82638 0.69733 0.77751 0.74604 1.19840 1.19821 1.19820 1.24320 0.94544 0.91938 1.02669 0.92346 0.93733 0.91426 0.90631 0.94130 0.90663 0.90079 0.91738 0.89958 0.93065 0.89822 0.92387 0.89677 0.90516 0.86908 0.89547 0.88147 0.87459 0.89648 0.78278 0.93044 0.88859 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.81 71.98 0.71 -1.31 16 2 C -0.11 -1.80 5.43 30.60 0.17 -1.64 16 3 C -0.07 -1.25 2.11 -9.49 -0.02 -1.27 16 4 H 0.07 1.49 7.26 -2.39 -0.02 1.47 16 5 C -0.11 -1.33 5.69 31.67 0.18 -1.15 16 6 C -0.12 -1.45 6.80 31.32 0.21 -1.24 16 7 C -0.11 -1.70 6.06 31.32 0.19 -1.51 16 8 C -0.11 -1.93 1.73 -10.46 -0.02 -1.95 16 9 H 0.11 1.68 6.87 -2.39 -0.02 1.66 16 10 C 0.52 12.81 6.73 87.66 0.59 13.40 16 11 O -0.58 -17.89 15.29 -3.01 -0.05 -17.93 16 12 N -0.59 -14.17 3.11 -821.56 -2.56 -16.72 16 13 C 0.08 1.87 9.03 127.77 1.15 3.02 16 14 C 0.12 2.92 4.65 45.45 0.21 3.14 16 15 C -0.01 -0.15 7.31 83.58 0.61 0.46 16 16 N -0.46 -13.84 4.29 -932.50 -4.00 -17.84 16 17 C 0.02 0.64 5.30 85.56 0.45 1.09 16 18 C 0.45 20.91 7.85 87.66 0.69 21.60 16 19 O -0.61 -33.25 16.01 -3.08 -0.05 -33.30 16 20 N -0.59 -29.76 5.28 -306.98 -1.62 -31.38 16 21 C -0.41 -23.15 9.68 84.04 0.81 -22.34 16 22 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 23 C -0.04 -2.42 5.50 84.93 0.47 -1.95 16 24 N -0.92 -51.23 13.68 21.66 0.30 -50.94 16 25 Si 1.13 48.43 29.92 68.60 2.05 50.48 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 C -0.01 -0.14 6.72 83.58 0.56 0.43 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 33 H 0.08 0.98 7.99 -2.39 -0.02 0.96 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 36 H 0.08 0.77 7.93 -2.39 -0.02 0.75 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 0.97 7.83 -2.39 -0.02 0.95 16 40 H 0.08 1.11 7.53 -2.39 -0.02 1.09 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.51 5.87 -2.39 -0.01 1.50 16 43 H 0.08 2.26 5.51 -2.38 -0.01 2.24 16 44 H 0.11 2.75 7.33 -2.39 -0.02 2.73 16 45 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.10 1.89 7.91 -2.39 -0.02 1.87 16 47 H 0.11 3.09 8.08 -2.39 -0.02 3.07 16 48 H 0.09 2.36 7.30 -2.39 -0.02 2.35 16 49 H 0.38 17.72 6.73 -92.71 -0.62 17.10 16 50 H 0.26 13.93 6.77 -92.72 -0.63 13.30 16 51 H 0.09 2.22 7.42 -2.39 -0.02 2.20 16 52 H 0.07 2.28 7.34 -2.39 -0.02 2.26 16 Total: -1.00 -73.35 404.86 1.47 -71.88 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.43 Total: 36.97 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 6.97 Total: 8.78 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -7.88 Total: -116.88 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.10 Total: -51.23 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.05 Total: 50.48 kcal Total: -73.35 1.47 -71.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499742048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.145 kcal (2) G-P(sol) polarization free energy of solvation -73.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds