Wall clock time and date at job start Tue Mar 31 2020 20:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46974 * 2 1 4 4 H 1.08998 * 109.47303 * 55.00140 * 3 2 1 5 5 C 1.53000 * 109.47187 * 295.00131 * 3 2 1 6 6 C 1.53005 * 109.46936 * 175.00352 * 3 2 1 7 7 C 1.50704 * 109.47048 * 185.00030 * 6 3 2 8 8 O 1.21282 * 119.99773 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00212 * 179.97438 * 7 6 3 10 10 C 1.46494 * 125.29070 * 179.97438 * 9 7 6 11 11 C 1.53804 * 108.30632 * 178.09408 * 10 9 7 12 12 H 1.08996 * 112.68539 * 109.41516 * 11 10 9 13 13 C 1.54191 * 108.41640 * 234.83466 * 11 10 9 14 14 N 1.47829 * 107.26603 * 111.90019 * 13 11 10 15 15 C 1.46894 * 111.00137 * 214.65410 * 14 13 11 16 16 C 1.50703 * 109.47518 * 287.46349 * 15 14 13 17 17 O 1.21292 * 119.99359 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00022 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99747 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00139 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00060 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00046 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99940 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47353 * 90.00591 * 23 21 19 25 25 H 1.48503 * 109.46832 * 210.00295 * 23 21 19 26 26 H 1.48497 * 109.46945 * 329.99904 * 23 21 19 27 27 C 1.48568 * 105.87431 * 335.20194 * 14 13 11 28 28 C 1.54569 * 103.28945 * 39.35788 * 27 14 13 29 29 H 1.09003 * 112.83541 * 83.99238 * 28 27 14 30 30 C 1.46646 * 125.28734 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47530 * 59.99914 * 1 2 3 32 32 H 1.09001 * 109.46799 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46998 * 299.99569 * 1 2 3 34 34 H 1.09005 * 109.46998 * 240.00431 * 2 1 3 35 35 H 1.08999 * 109.47530 * 120.00086 * 2 1 3 36 36 H 1.08998 * 109.47007 * 300.00190 * 5 3 2 37 37 H 1.08997 * 109.47011 * 59.99888 * 5 3 2 38 38 H 1.09001 * 109.47418 * 179.97438 * 5 3 2 39 39 H 1.08999 * 109.47415 * 65.00088 * 6 3 2 40 40 H 1.08994 * 109.46731 * 304.99720 * 6 3 2 41 41 H 1.09001 * 109.70732 * 58.35648 * 10 9 7 42 42 H 1.09003 * 109.70975 * 297.82799 * 10 9 7 43 43 H 1.09007 * 109.88082 * 352.48515 * 13 11 10 44 44 H 1.09000 * 110.01137 * 231.39205 * 13 11 10 45 45 H 1.09000 * 109.47220 * 47.46271 * 15 14 13 46 46 H 1.09003 * 109.47683 * 167.46126 * 15 14 13 47 47 H 0.96997 * 120.00262 * 359.97438 * 18 16 15 48 48 H 0.97003 * 120.00548 * 179.97438 * 22 21 19 49 49 H 1.09002 * 110.68652 * 157.85904 * 27 14 13 50 50 H 1.08999 * 110.68534 * 280.86421 * 27 14 13 51 51 H 1.09005 * 109.91091 * 316.85142 * 30 9 7 52 52 H 1.08995 * 109.91780 * 77.94279 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4443 0.1256 7 6 4.0570 2.8634 0.2492 8 8 3.2660 3.7827 0.2374 9 7 5.3760 3.1108 0.3728 10 6 5.9795 4.4396 0.4997 11 6 7.4989 4.2664 0.6643 12 1 8.0567 4.5923 -0.2135 13 6 7.9358 4.9956 1.9507 14 7 8.3590 3.9618 2.9190 15 6 8.0147 4.3540 4.2921 16 6 8.9307 5.4627 4.7426 17 8 9.7865 5.8842 3.9935 18 7 8.7996 5.9850 5.9780 19 6 9.6332 6.9932 6.3880 20 1 10.3953 7.3686 5.7211 21 6 9.4984 7.5314 7.6620 22 7 10.2978 8.4974 8.0551 23 14 8.1809 6.8816 8.8157 24 1 8.7340 5.7610 9.6178 25 1 7.7385 7.9696 9.7245 26 1 7.0227 6.3981 8.0221 27 6 7.6453 2.7197 2.5252 28 6 7.6964 2.7550 0.9808 29 1 8.6269 2.3537 0.5790 30 6 6.4301 2.0917 0.4011 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 2.0697 1.5875 -2.1491 37 1 0.5489 2.1252 -1.3969 38 1 1.9980 3.1544 -1.3072 39 1 4.0029 0.9836 -0.7597 40 1 3.8570 0.8801 1.0112 41 1 5.5705 4.9472 1.3733 42 1 5.7711 5.0251 -0.3958 43 1 7.0990 5.5638 2.3572 44 1 8.7686 5.6651 1.7355 45 1 6.9819 4.7011 4.3226 46 1 8.1294 3.4962 4.9547 47 1 8.1154 5.6476 6.5771 48 1 10.2036 8.8734 8.9443 49 1 8.1634 1.8402 2.9076 50 1 6.6138 2.7405 2.8768 51 1 6.1230 1.2574 1.0318 52 1 6.6318 1.7380 -0.6100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501216961.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:02 Heat of formation + Delta-G solvation = -93.260049 kcal Electronic energy + Delta-G solvation = -29765.559692 eV Core-core repulsion = 25763.583514 eV Total energy + Delta-G solvation = -4001.976177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.83054 -40.54295 -39.73279 -37.36918 -36.71176 -35.90614 -33.78713 -33.04757 -31.89297 -31.36583 -29.26991 -28.45139 -27.15307 -26.41977 -25.05855 -23.88661 -22.29272 -21.36976 -21.09139 -20.90376 -20.30947 -19.86885 -18.21399 -17.76276 -17.40104 -16.88058 -16.62055 -16.47367 -16.29411 -15.94088 -15.64005 -15.32551 -15.24205 -14.98661 -14.67211 -14.43955 -14.33243 -14.10730 -13.98431 -13.74936 -13.44438 -13.27272 -13.19347 -13.04777 -12.83395 -12.77116 -12.67981 -12.45461 -12.35944 -12.20389 -12.02238 -12.00746 -11.86523 -11.70738 -11.69023 -11.53001 -11.51001 -11.37828 -10.73339 -10.43837 -10.25632 -9.68569 -9.30956 -8.42737 -6.03298 1.27871 1.33114 1.41786 1.62938 1.94194 1.98256 2.20826 2.61893 3.09998 3.15623 3.31468 3.47885 3.53974 3.78371 3.84789 3.99837 4.08745 4.10758 4.14871 4.22446 4.27639 4.32262 4.41397 4.45443 4.50215 4.58101 4.63808 4.66688 4.67412 4.71091 4.73371 4.82445 4.86719 4.87279 4.93573 5.04511 5.13312 5.14628 5.17704 5.20289 5.25673 5.32237 5.36422 5.50960 5.53326 5.59773 5.84163 5.91508 6.01670 6.52131 6.58330 6.87054 7.16763 7.38303 7.95604 8.74915 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.002240 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.263584 B =12496.335088 C =13453.912213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.077 4.077 4 H 0.052 0.948 5 C -0.151 4.151 6 C -0.124 4.124 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.615 5.615 10 C 0.114 3.886 11 C -0.097 4.097 12 H 0.115 0.885 13 C 0.050 3.950 14 N -0.512 5.512 15 C 0.047 3.953 16 C 0.451 3.549 17 O -0.605 6.605 18 N -0.594 5.594 19 C -0.326 4.326 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.254 1.254 25 H -0.275 1.275 26 H -0.236 1.236 27 C 0.040 3.960 28 C -0.085 4.085 29 H 0.132 0.868 30 C 0.108 3.892 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.123 0.877 47 H 0.388 0.612 48 H 0.279 0.721 49 H 0.106 0.894 50 H 0.048 0.952 51 H 0.104 0.896 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.860 -24.722 -17.085 34.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.071 0.929 5 C -0.208 4.208 6 C -0.163 4.163 7 C 0.309 3.691 8 O -0.465 6.465 9 N -0.349 5.349 10 C -0.009 4.009 11 C -0.117 4.117 12 H 0.133 0.867 13 C -0.078 4.078 14 N -0.236 5.236 15 C -0.085 4.085 16 C 0.239 3.761 17 O -0.488 6.488 18 N -0.236 5.236 19 C -0.456 4.456 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.178 1.178 25 H -0.200 1.200 26 H -0.160 1.160 27 C -0.087 4.087 28 C -0.104 4.104 29 H 0.150 0.850 30 C -0.014 4.014 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.141 0.859 47 H 0.223 0.777 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.066 0.934 51 H 0.122 0.878 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.145 -23.898 -17.451 34.199 hybrid contribution -1.025 1.316 1.208 2.060 sum -18.170 -22.581 -16.243 33.225 Atomic orbital electron populations 1.21834 0.96065 1.01942 1.01567 1.21548 0.95906 0.94516 1.03081 1.20913 0.93302 0.97010 0.98369 0.92932 1.21941 1.01314 1.00574 0.97011 1.21810 0.97013 0.91129 1.06331 1.21180 0.79916 0.92984 0.74976 1.90679 1.54916 1.48650 1.52226 1.48369 1.06217 1.08107 1.72185 1.21846 0.92469 0.85795 1.00835 1.22883 0.93648 0.97038 0.98088 0.86736 1.22923 0.98284 0.94433 0.92146 1.64401 1.55005 1.04106 1.00136 1.21997 0.96113 0.97480 0.92860 1.20878 0.87245 0.86097 0.81894 1.90532 1.38913 1.64502 1.54882 1.42053 1.32792 1.34391 1.14395 1.18989 1.13628 1.13081 0.99860 0.92636 1.26102 1.00529 0.96188 0.98631 1.69800 1.39940 1.26923 1.20804 0.85373 0.78558 0.79107 0.78528 1.17824 1.20019 1.15955 1.23423 0.97042 0.92943 0.95295 1.23052 0.99581 0.93267 0.94528 0.85043 1.22196 0.85150 0.90833 1.03189 0.92781 0.91817 0.93573 0.90573 0.90888 0.91969 0.92650 0.93853 0.86326 0.86593 0.93786 0.92007 0.95130 0.92430 0.91385 0.85889 0.77660 0.91153 0.87600 0.93350 0.87759 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.67 71.98 0.70 -0.85 16 2 C -0.11 -0.98 5.40 30.59 0.17 -0.81 16 3 C -0.08 -1.04 2.04 -10.79 -0.02 -1.07 16 4 H 0.05 0.98 7.96 -2.39 -0.02 0.96 16 5 C -0.15 -2.40 8.69 71.98 0.63 -1.78 16 6 C -0.12 -1.33 4.21 29.85 0.13 -1.21 16 7 C 0.52 10.29 7.55 87.66 0.66 10.95 16 8 O -0.58 -17.24 14.27 -3.04 -0.04 -17.28 16 9 N -0.62 -10.59 3.31 -817.43 -2.70 -13.29 16 10 C 0.11 2.47 6.35 86.65 0.55 3.02 16 11 C -0.10 -1.93 4.06 -9.20 -0.04 -1.97 16 12 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 13 C 0.05 1.50 5.45 86.53 0.47 1.97 16 14 N -0.51 -14.89 4.90 -888.02 -4.35 -19.25 16 15 C 0.05 1.49 5.27 85.56 0.45 1.94 16 16 C 0.45 20.83 7.61 87.66 0.67 21.50 16 17 O -0.60 -33.91 14.87 -3.07 -0.05 -33.96 16 18 N -0.59 -28.69 5.09 -306.98 -1.56 -30.25 16 19 C -0.33 -19.43 10.16 84.04 0.85 -18.58 16 20 H 0.06 3.93 7.39 -2.91 -0.02 3.90 16 21 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 22 N -0.93 -56.99 13.96 21.66 0.30 -56.69 16 23 Si 0.96 39.57 27.74 68.60 1.90 41.48 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.24 -8.30 6.52 99.48 0.65 -7.65 16 27 C 0.04 0.71 5.79 86.51 0.50 1.21 16 28 C -0.09 -1.17 4.16 -8.91 -0.04 -1.21 16 29 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 30 C 0.11 1.00 5.87 86.78 0.51 1.51 16 31 H 0.05 0.57 6.56 -2.39 -0.02 0.55 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.08 0.48 8.14 -2.38 -0.02 0.47 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.84 6.56 -2.39 -0.02 0.82 16 38 H 0.04 0.97 5.95 -2.39 -0.01 0.95 16 39 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.12 0.74 7.88 -2.39 -0.02 0.73 16 41 H 0.04 1.17 6.95 -2.39 -0.02 1.16 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.03 0.98 6.34 -2.38 -0.02 0.96 16 44 H 0.06 2.12 7.53 -2.39 -0.02 2.11 16 45 H 0.07 1.94 7.73 -2.39 -0.02 1.92 16 46 H 0.12 3.11 8.08 -2.39 -0.02 3.09 16 47 H 0.39 15.63 5.76 -92.71 -0.53 15.09 16 48 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 49 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.05 0.85 7.80 -2.39 -0.02 0.83 16 51 H 0.10 0.49 7.47 -2.38 -0.02 0.47 16 52 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -84.29 400.48 0.46 -83.83 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.32 Total: 31.22 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.65 Total: 14.20 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -8.32 Total: -119.48 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.09 Total: -51.24 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.48 kcal Total: -84.29 0.46 -83.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501216961.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.428 kcal (2) G-P(sol) polarization free energy of solvation -84.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds