Wall clock time and date at job start Tue Mar 31 2020 20:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 H 1.08994 * 109.47405 * 305.00047 * 3 2 1 5 5 C 1.52996 * 109.47068 * 65.00368 * 3 2 1 6 6 C 1.50702 * 109.47159 * 185.00014 * 3 2 1 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 3 2 9 9 C 1.47178 * 135.99262 * 359.91382 * 8 6 3 10 10 C 1.52578 * 87.95133 * 206.65824 * 9 8 6 11 11 C 1.47181 * 135.99542 * 180.27668 * 8 6 3 12 12 C 1.52594 * 113.99878 * 88.36907 * 10 9 8 13 13 C 1.53246 * 109.00997 * 186.32279 * 12 10 9 14 14 N 1.46832 * 109.42361 * 303.38953 * 13 12 10 15 15 C 1.46902 * 110.99737 * 187.89974 * 14 13 12 16 16 C 1.50708 * 109.46715 * 65.43144 * 15 14 13 17 17 O 1.21289 * 120.00065 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99619 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99559 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00156 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99495 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00287 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99773 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46727 * 90.00148 * 23 21 19 25 25 H 1.48489 * 109.47186 * 210.00550 * 23 21 19 26 26 H 1.48506 * 109.47017 * 330.00713 * 23 21 19 27 27 C 1.46843 * 111.47995 * 63.60456 * 14 13 12 28 28 C 1.52594 * 114.36264 * 220.64400 * 10 9 8 29 29 H 1.09001 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47154 * 299.99844 * 1 2 3 31 31 H 1.09003 * 109.47483 * 59.99472 * 1 2 3 32 32 H 1.09009 * 109.47154 * 240.00156 * 2 1 3 33 33 H 1.09003 * 109.47483 * 120.00527 * 2 1 3 34 34 H 1.09002 * 109.47575 * 59.99595 * 5 3 2 35 35 H 1.09001 * 109.47551 * 179.97438 * 5 3 2 36 36 H 1.09003 * 109.46851 * 300.00074 * 5 3 2 37 37 H 1.09006 * 113.49199 * 321.34957 * 9 8 6 38 38 H 1.08998 * 113.49517 * 91.86283 * 9 8 6 39 39 H 1.09000 * 113.49108 * 268.14388 * 11 8 6 40 40 H 1.08997 * 113.48686 * 38.58879 * 11 8 6 41 41 H 1.08996 * 109.54380 * 306.18338 * 12 10 9 42 42 H 1.08998 * 109.54543 * 66.46329 * 12 10 9 43 43 H 1.08994 * 109.48152 * 183.39846 * 13 12 10 44 44 H 1.09003 * 109.47904 * 63.37335 * 13 12 10 45 45 H 1.09003 * 109.47058 * 185.42245 * 15 14 13 46 46 H 1.08994 * 109.47552 * 305.42909 * 15 14 13 47 47 H 0.97000 * 120.00171 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00055 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.47767 * 176.40626 * 27 14 13 50 50 H 1.08999 * 109.48786 * 56.37979 * 27 14 13 51 51 H 1.08998 * 109.54854 * 293.70556 * 28 10 9 52 52 H 1.08997 * 109.54605 * 53.90044 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4442 -0.1238 7 8 4.1450 0.3950 -0.2047 8 7 4.2145 2.6118 -0.1509 9 6 3.8605 4.0391 -0.0885 10 6 5.1364 4.3335 -0.8717 11 6 5.6244 3.0191 -0.2623 12 6 4.9583 4.2917 -2.3867 13 6 6.3289 4.4443 -3.0548 14 7 6.9591 5.6893 -2.5977 15 6 8.1877 5.9660 -3.3540 16 6 7.8404 6.2330 -4.7960 17 8 6.6834 6.1959 -5.1581 18 7 8.8156 6.5129 -5.6833 19 6 8.4998 6.7553 -6.9952 20 1 7.4695 6.7223 -7.3175 21 6 9.5051 7.0445 -7.9098 22 7 10.7586 7.0851 -7.5174 23 14 9.0748 7.3740 -9.6975 24 1 8.8267 8.8257 -9.8872 25 1 10.2020 6.9469 -10.5647 26 1 7.8536 6.6114 -10.0614 27 6 7.2257 5.6584 -1.1540 28 6 5.8988 5.5654 -0.3928 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0699 1.5874 2.1492 35 1 1.9991 3.1540 1.3076 36 1 0.5490 2.1251 1.3969 37 1 2.9503 4.2853 -0.6355 38 1 3.8682 4.4449 0.9230 39 1 6.1181 3.1438 0.7015 40 1 6.2005 2.4053 -0.9547 41 1 4.5157 3.3385 -2.6756 42 1 4.3070 5.1077 -2.6999 43 1 6.2042 4.4762 -4.1371 44 1 6.9605 3.5974 -2.7864 45 1 8.6850 6.8395 -2.9324 46 1 8.8531 5.1048 -3.2940 47 1 9.7409 6.5429 -5.3936 48 1 11.4604 7.2866 -8.1559 49 1 7.7496 6.5684 -0.8616 50 1 7.8425 4.7917 -0.9166 51 1 5.3051 6.4592 -0.5843 52 1 6.0952 5.4801 0.6760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501724806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:29 Heat of formation + Delta-G solvation = -42.538446 kcal Electronic energy + Delta-G solvation = -29911.236090 eV Core-core repulsion = 25911.459366 eV Total energy + Delta-G solvation = -3999.776723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34061 -39.27497 -38.34393 -36.59452 -35.63816 -33.90594 -32.39426 -31.23652 -30.83648 -30.26551 -28.30952 -26.49795 -26.17699 -25.32620 -24.10542 -23.27432 -21.97568 -21.13992 -19.20580 -19.17979 -18.35584 -17.83913 -17.19149 -16.37973 -16.14652 -15.88075 -15.35606 -15.32332 -14.93992 -14.60335 -14.43875 -14.11854 -13.87535 -13.80362 -13.70441 -13.58625 -13.24853 -13.02538 -12.64842 -12.57024 -12.47090 -12.32725 -12.10849 -12.00301 -11.85715 -11.76240 -11.49480 -11.32261 -11.16249 -11.08631 -11.02286 -11.00255 -10.58502 -10.41181 -10.36998 -10.35157 -10.20947 -9.75715 -9.45639 -8.89345 -8.40695 -7.96502 -7.81637 -6.40951 -3.81596 2.45528 2.62380 3.18243 3.26876 3.32527 3.90447 3.93223 4.05944 4.14830 4.26582 4.41015 4.51546 4.61939 4.72884 4.87942 4.93149 5.00868 5.06277 5.10450 5.14288 5.16080 5.19544 5.25075 5.28452 5.40056 5.44191 5.47890 5.49626 5.51567 5.57472 5.59265 5.64287 5.67203 5.77287 5.80470 5.87578 5.89154 5.91576 5.99216 6.04177 6.05026 6.17211 6.29248 6.38677 6.51408 7.31772 7.45811 7.55192 7.55978 7.98641 8.07475 8.62812 9.19050 9.55693 10.07421 10.76790 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.002113 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.300758 B =13246.821342 C =14027.285751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.105 4.105 4 H 0.096 0.904 5 C -0.145 4.145 6 C 0.544 3.456 7 O -0.543 6.543 8 N -0.643 5.643 9 C 0.107 3.893 10 C -0.092 4.092 11 C 0.109 3.891 12 C -0.082 4.082 13 C 0.055 3.945 14 N -0.515 5.515 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.056 3.944 28 C -0.094 4.094 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.075 0.925 50 H 0.029 0.971 51 H 0.080 0.920 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.884 -6.634 19.975 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.126 4.126 4 H 0.115 0.885 5 C -0.202 4.202 6 C 0.334 3.666 7 O -0.420 6.420 8 N -0.378 5.378 9 C -0.016 4.016 10 C -0.093 4.093 11 C -0.013 4.013 12 C -0.120 4.120 13 C -0.072 4.072 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.072 4.072 28 C -0.133 4.133 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.039 0.961 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.048 0.952 51 H 0.099 0.901 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.622 -7.045 19.488 25.361 hybrid contribution 1.176 -0.374 -0.495 1.330 sum -13.445 -7.419 18.993 24.425 Atomic orbital electron populations 1.21842 0.95360 1.01943 1.01903 1.21353 0.95419 0.94099 1.03498 1.21286 0.91345 0.99363 1.00632 0.88544 1.21836 1.02262 1.00408 0.95728 1.20298 0.89532 0.81424 0.75297 1.90706 1.70452 1.30433 1.50385 1.49622 1.09853 1.05508 1.72815 1.23053 0.99127 0.79154 1.00241 1.21847 0.95652 0.94816 0.96958 1.23063 0.84303 0.93590 1.00363 1.21222 0.98216 1.02064 0.90489 1.22241 0.93647 0.88559 1.02781 1.61387 1.25079 1.35555 1.01981 1.21828 0.91119 1.00974 0.94544 1.19759 0.86388 0.84415 0.86517 1.90478 1.19431 1.56605 1.79638 1.41880 1.08423 1.61475 1.08376 1.19687 0.95302 1.44306 0.83436 0.87929 1.25260 0.94761 0.97480 1.00509 1.69609 0.99382 1.49288 1.36062 0.85865 0.78052 0.78698 0.81715 1.20415 1.20976 1.19448 1.22096 0.96136 1.00612 0.88384 1.21399 0.96303 0.97140 0.98409 0.92419 0.92463 0.92603 0.91074 0.91412 0.92270 0.92055 0.91145 0.90141 0.89620 0.89973 0.90495 0.91768 0.90097 0.87663 0.96142 0.89365 0.93604 0.77511 0.91904 0.90620 0.95235 0.90094 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.15 0.36 -0.62 16 2 C -0.11 -0.92 4.75 -26.74 -0.13 -1.05 16 3 C -0.11 -0.91 2.60 -91.77 -0.24 -1.15 16 4 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.14 -0.94 8.83 37.16 0.33 -0.62 16 6 C 0.54 6.65 7.40 -10.98 -0.08 6.57 16 7 O -0.54 -8.86 16.69 5.55 0.09 -8.77 16 8 N -0.64 -6.82 3.43 -185.33 -0.64 -7.45 16 9 C 0.11 0.84 5.90 -8.33 -0.05 0.80 16 10 C -0.09 -0.90 0.85 -155.20 -0.13 -1.03 16 11 C 0.11 1.14 7.67 -8.17 -0.06 1.08 16 12 C -0.08 -1.05 5.27 -26.81 -0.14 -1.19 16 13 C 0.06 0.87 5.09 -3.73 -0.02 0.85 16 14 N -0.52 -8.08 4.35 -235.85 -1.03 -9.10 16 15 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 16 C 0.44 10.25 7.44 -10.98 -0.08 10.17 16 17 O -0.58 -15.12 13.89 5.55 0.08 -15.05 16 18 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.06 0.64 5.45 -3.72 -0.02 0.62 16 28 C -0.09 -0.86 5.35 -26.81 -0.14 -1.00 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.31 6.57 -51.92 -0.34 -0.03 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.73 7.96 -51.92 -0.41 0.32 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.36 6.35 -51.93 -0.33 0.03 16 36 H 0.07 0.36 6.56 -51.93 -0.34 0.02 16 37 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.09 0.51 8.04 -51.93 -0.42 0.09 16 39 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 40 H 0.08 0.95 7.78 -51.93 -0.40 0.55 16 41 H 0.06 0.84 7.95 -51.93 -0.41 0.42 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.11 2.08 5.73 -51.93 -0.30 1.78 16 44 H 0.02 0.31 7.82 -51.93 -0.41 -0.09 16 45 H 0.09 1.38 7.96 -51.93 -0.41 0.96 16 46 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 50 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.07 0.47 8.02 -51.93 -0.42 0.06 16 LS Contribution 405.92 15.07 6.12 6.12 Total: -1.00 -32.90 405.92 -9.49 -42.39 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -9.08 Total: 7.51 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.68 Total: 6.33 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -1.00 Total: -54.52 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.90 -9.49 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501724806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.148 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds