Wall clock time and date at job start Tue Mar 31 2020 20:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 H 1.09005 * 109.47256 * 54.99703 * 3 2 1 5 5 C 1.53000 * 109.47199 * 294.99954 * 3 2 1 6 6 C 1.50699 * 109.47272 * 174.99848 * 3 2 1 7 7 O 1.21290 * 119.99694 * 30.59015 * 6 3 2 8 8 N 1.34772 * 120.00476 * 210.59272 * 6 3 2 9 9 C 1.47180 * 135.98955 * 4.82958 * 8 6 3 10 10 C 1.52579 * 87.94837 * 206.66281 * 9 8 6 11 11 C 1.47169 * 135.99351 * 185.19302 * 8 6 3 12 12 C 1.52587 * 114.00076 * 88.37090 * 10 9 8 13 13 C 1.53253 * 109.00963 * 186.32448 * 12 10 9 14 14 N 1.46834 * 109.42119 * 303.38328 * 13 12 10 15 15 C 1.46900 * 110.99804 * 187.90535 * 14 13 12 16 16 C 1.50692 * 109.47133 * 65.43206 * 15 14 13 17 17 O 1.21288 * 120.00448 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99941 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99842 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99608 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00205 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99873 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47071 * 59.99781 * 23 21 19 25 25 H 1.48499 * 109.47151 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47178 * 299.99738 * 23 21 19 27 27 C 1.46838 * 111.47657 * 63.60602 * 14 13 12 28 28 C 1.52595 * 114.36175 * 220.64140 * 10 9 8 29 29 H 1.09007 * 109.46979 * 59.99961 * 1 2 3 30 30 H 1.09002 * 109.47118 * 300.00127 * 1 2 3 31 31 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47051 * 119.99810 * 2 1 3 33 33 H 1.09003 * 109.47018 * 240.00420 * 2 1 3 34 34 H 1.09004 * 109.47176 * 65.82515 * 5 3 2 35 35 H 1.09002 * 109.47241 * 185.82617 * 5 3 2 36 36 H 1.09005 * 109.47275 * 305.82788 * 5 3 2 37 37 H 1.09005 * 113.48775 * 321.35013 * 9 8 6 38 38 H 1.08994 * 113.49600 * 91.86736 * 9 8 6 39 39 H 1.09003 * 113.49726 * 268.13292 * 11 8 6 40 40 H 1.09004 * 113.49254 * 38.65434 * 11 8 6 41 41 H 1.08997 * 109.54971 * 306.17817 * 12 10 9 42 42 H 1.08991 * 109.55326 * 66.46390 * 12 10 9 43 43 H 1.09005 * 109.47717 * 183.40435 * 13 12 10 44 44 H 1.08997 * 109.48137 * 63.36911 * 13 12 10 45 45 H 1.09006 * 109.46762 * 185.43238 * 15 14 13 46 46 H 1.08996 * 109.47166 * 305.42823 * 15 14 13 47 47 H 0.96999 * 119.99940 * 359.97438 * 18 16 15 48 48 H 0.97000 * 119.99956 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.47949 * 176.41045 * 27 14 13 50 50 H 1.09001 * 109.48886 * 56.38017 * 27 14 13 51 51 H 1.08993 * 109.55308 * 293.71028 * 28 10 9 52 52 H 1.09006 * 109.54227 * 53.89738 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5419 1.4444 0.1239 7 8 4.1891 0.5258 -0.3325 8 7 4.1659 2.4667 0.7418 9 6 3.7497 3.6729 1.4753 10 6 5.0699 4.3148 1.0593 11 6 5.5622 2.8699 0.9734 12 6 5.0131 5.0366 -0.2839 13 6 6.4246 5.4977 -0.6629 14 7 6.9651 6.3453 0.4074 15 6 8.2368 6.9586 0.0016 16 6 7.9931 7.9118 -1.1398 17 8 6.8707 8.0649 -1.5730 18 7 9.0227 8.5935 -1.6799 19 6 8.8009 9.4612 -2.7181 20 1 7.8013 9.5981 -3.1033 21 6 9.8623 10.1644 -3.2746 22 7 11.0785 9.9982 -2.8055 23 14 9.5603 11.3460 -4.6894 24 1 8.6155 12.4064 -4.2557 25 1 10.8457 11.9664 -5.0992 26 1 8.9795 10.6049 -5.8379 27 6 7.1186 5.5959 1.6608 28 6 5.7411 5.1397 2.1537 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.5498 2.2179 -1.3487 35 1 2.0853 3.1183 -1.3530 36 1 1.9822 1.5309 -2.1517 37 1 2.8758 4.1628 1.0455 38 1 3.6613 3.5187 2.5506 39 1 5.9732 2.4945 1.9106 40 1 6.2155 2.6834 0.1210 41 1 4.6342 4.3571 -1.0473 42 1 4.3554 5.9022 -0.2053 43 1 6.3839 6.0669 -1.5916 44 1 7.0674 4.6278 -0.7973 45 1 8.6631 7.5025 0.8446 46 1 8.9303 6.1803 -0.3167 47 1 9.9205 8.4708 -1.3337 48 1 11.8194 10.4894 -3.1938 49 1 7.5799 6.2360 2.4128 50 1 7.7500 4.7243 1.4885 51 1 5.1279 6.0116 2.3811 52 1 5.8562 4.5308 3.0504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501724807.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:32 Heat of formation + Delta-G solvation = -43.212124 kcal Electronic energy + Delta-G solvation = -29942.576321 eV Core-core repulsion = 25942.770384 eV Total energy + Delta-G solvation = -3999.805936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.32236 -39.27610 -38.35338 -36.60400 -35.59442 -33.90574 -32.35575 -31.23639 -30.83135 -30.23700 -28.37642 -26.65767 -26.11048 -25.22165 -24.11185 -23.27349 -21.96274 -21.17796 -19.19703 -19.13365 -18.34429 -17.83967 -17.33667 -16.20360 -16.12395 -15.90152 -15.43401 -15.19308 -14.93893 -14.62722 -14.48198 -14.17272 -13.90921 -13.77988 -13.70529 -13.56366 -13.15963 -12.90030 -12.75816 -12.58017 -12.46945 -12.30278 -12.11764 -12.00174 -11.86870 -11.77932 -11.49493 -11.32238 -11.15252 -11.09548 -11.03756 -11.00302 -10.58853 -10.45511 -10.38265 -10.35371 -10.20576 -9.73448 -9.44955 -8.89725 -8.40880 -7.96641 -7.81834 -6.40931 -3.81682 2.44733 2.61181 3.20348 3.26113 3.30286 3.90382 3.93217 4.06189 4.14864 4.26453 4.41365 4.53204 4.64639 4.72570 4.88549 4.93715 5.04072 5.06574 5.11131 5.14123 5.15709 5.23573 5.25789 5.28820 5.38952 5.45209 5.47911 5.49356 5.53235 5.57209 5.63970 5.64547 5.69180 5.72935 5.80248 5.87024 5.89355 5.94041 5.99008 6.00791 6.04305 6.16767 6.29100 6.38268 6.50784 7.31528 7.45539 7.54841 7.55678 7.98605 8.07144 8.62728 9.18839 9.55529 10.07314 10.76717 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002144 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.357823 B =13055.357212 C =13877.159883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.102 4.102 4 H 0.087 0.913 5 C -0.142 4.142 6 C 0.545 3.455 7 O -0.543 6.543 8 N -0.644 5.644 9 C 0.107 3.893 10 C -0.091 4.091 11 C 0.109 3.891 12 C -0.082 4.082 13 C 0.055 3.945 14 N -0.515 5.515 15 C 0.047 3.953 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.056 3.944 28 C -0.094 4.094 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.075 0.925 50 H 0.029 0.971 51 H 0.081 0.919 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.098 -15.337 11.815 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.123 4.123 4 H 0.105 0.895 5 C -0.199 4.199 6 C 0.335 3.665 7 O -0.420 6.420 8 N -0.379 5.379 9 C -0.016 4.016 10 C -0.092 4.092 11 C -0.013 4.013 12 C -0.120 4.120 13 C -0.072 4.072 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.072 4.072 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.048 0.952 51 H 0.099 0.901 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.771 -15.464 11.172 24.753 hybrid contribution 1.223 -0.098 -0.458 1.309 sum -14.549 -15.562 10.715 23.846 Atomic orbital electron populations 1.21823 0.95202 1.01929 1.02006 1.21398 0.95726 0.94129 1.03281 1.21258 0.91203 0.99122 1.00760 0.89465 1.21761 1.02019 1.00627 0.95520 1.20316 0.89845 0.79433 0.76892 1.90702 1.67810 1.34421 1.49044 1.49668 1.09793 1.24130 1.54355 1.23052 0.98710 0.82980 0.96907 1.21840 0.95481 0.93798 0.98113 1.23065 0.84850 0.91812 1.01600 1.21221 0.98194 0.99285 0.93266 1.22245 0.93836 0.94540 0.96620 1.61384 1.26230 1.33209 1.03171 1.21825 0.90515 0.97382 0.98739 1.19752 0.85853 0.85238 0.86250 1.90476 1.22813 1.68308 1.64583 1.41874 1.08805 1.38039 1.31395 1.19639 0.96002 1.17810 1.09365 0.87981 1.25256 0.94720 0.98719 0.99273 1.69602 0.99255 1.42879 1.42605 0.85926 0.77365 0.80111 0.80855 1.19904 1.21014 1.19944 1.22095 0.96132 0.96321 0.92681 1.21400 0.96507 0.99578 0.95775 0.92241 0.92721 0.92427 0.91878 0.90754 0.91145 0.91995 0.91779 0.90137 0.89595 0.89975 0.90519 0.91782 0.90083 0.87655 0.96155 0.89365 0.93609 0.77510 0.91848 0.90615 0.95233 0.90086 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.67 37.16 0.36 -0.58 16 2 C -0.11 -0.91 4.92 -26.73 -0.13 -1.04 16 3 C -0.10 -0.90 2.61 -91.77 -0.24 -1.14 16 4 H 0.09 0.62 7.87 -51.93 -0.41 0.21 16 5 C -0.14 -1.15 8.78 37.16 0.33 -0.83 16 6 C 0.55 6.71 7.12 -10.99 -0.08 6.63 16 7 O -0.54 -8.88 17.07 5.55 0.09 -8.78 16 8 N -0.64 -6.93 3.48 -185.33 -0.65 -7.57 16 9 C 0.11 0.85 7.36 -8.33 -0.06 0.79 16 10 C -0.09 -0.89 0.85 -155.20 -0.13 -1.02 16 11 C 0.11 1.15 7.68 -8.17 -0.06 1.09 16 12 C -0.08 -1.03 5.27 -26.81 -0.14 -1.17 16 13 C 0.06 0.86 5.09 -3.73 -0.02 0.85 16 14 N -0.52 -8.05 4.35 -235.86 -1.03 -9.08 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.23 7.44 -10.99 -0.08 10.15 16 17 O -0.58 -15.09 13.89 5.55 0.08 -15.01 16 18 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 C 0.06 0.64 5.45 -3.73 -0.02 0.62 16 28 C -0.09 -0.86 5.35 -26.81 -0.14 -1.00 16 29 H 0.06 0.34 6.70 -51.93 -0.35 -0.01 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.73 8.02 -51.93 -0.42 0.31 16 34 H 0.07 0.44 6.86 -51.93 -0.36 0.09 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 40 H 0.08 0.95 7.78 -51.93 -0.40 0.54 16 41 H 0.06 0.82 7.95 -51.93 -0.41 0.40 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.11 2.07 5.73 -51.93 -0.30 1.77 16 44 H 0.02 0.31 7.81 -51.93 -0.41 -0.10 16 45 H 0.09 1.37 7.96 -51.93 -0.41 0.96 16 46 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.08 0.81 7.97 -51.93 -0.41 0.39 16 50 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.07 0.48 8.02 -51.93 -0.42 0.06 16 LS Contribution 409.73 15.07 6.17 6.17 Total: -1.00 -32.80 409.73 -9.56 -42.37 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -9.19 Total: 7.61 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.69 Total: 6.23 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -1.01 Total: -54.54 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.17 Total: -23.79 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.80 -9.56 -42.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501724807.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.844 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds