Wall clock time and date at job start Tue Mar 31 2020 19:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50699 * 119.99804 * 2 1 4 4 C 1.32991 * 120.00100 * 180.02562 * 2 1 3 5 5 C 1.47103 * 119.99905 * 359.97438 * 4 2 1 6 6 O 1.21604 * 120.00194 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99777 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00103 * 359.97438 * 7 5 4 9 9 C 1.46499 * 120.00016 * 180.02562 * 7 5 4 10 10 C 1.53002 * 109.47299 * 179.24540 * 9 7 5 11 11 C 1.53008 * 109.46908 * 299.99886 * 10 9 7 12 12 C 1.52995 * 109.47071 * 300.00200 * 11 10 9 13 13 N 1.46900 * 109.46904 * 180.02562 * 12 11 10 14 14 C 1.46907 * 111.00094 * 154.99958 * 13 12 11 15 15 C 1.50702 * 109.46926 * 179.97438 * 14 13 12 16 16 O 1.21288 * 120.00304 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99494 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99549 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00190 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99696 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00396 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00041 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46800 * 89.99604 * 22 20 18 24 24 H 1.48496 * 109.47083 * 210.00062 * 22 20 18 25 25 H 1.48500 * 109.46962 * 330.00031 * 22 20 18 26 26 C 1.53002 * 109.47417 * 60.00112 * 12 11 10 27 27 C 1.52998 * 109.46945 * 59.24518 * 9 7 5 28 28 H 1.09005 * 109.47061 * 240.00262 * 1 2 3 29 29 H 1.09001 * 109.47558 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47017 * 120.00243 * 1 2 3 31 31 H 1.08999 * 109.47145 * 270.00079 * 3 2 1 32 32 H 1.08999 * 109.47441 * 29.99982 * 3 2 1 33 33 H 1.08997 * 109.47251 * 149.99888 * 3 2 1 34 34 H 1.07996 * 120.00048 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47104 * 275.93376 * 8 7 5 36 36 H 1.09000 * 109.46871 * 35.93812 * 8 7 5 37 37 H 1.08999 * 109.47045 * 155.93196 * 8 7 5 38 38 H 1.09001 * 109.47048 * 299.24440 * 9 7 5 39 39 H 1.08997 * 109.47264 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.46983 * 59.99639 * 10 9 7 41 41 H 1.09001 * 109.46892 * 179.97438 * 11 10 9 42 42 H 1.08997 * 109.46882 * 60.00104 * 11 10 9 43 43 H 1.08997 * 109.47189 * 299.99716 * 12 11 10 44 44 H 1.00901 * 110.99602 * 278.94995 * 13 12 11 45 45 H 1.08997 * 109.46970 * 299.99586 * 14 13 12 46 46 H 1.08995 * 109.47009 * 59.99752 * 14 13 12 47 47 H 0.96998 * 120.00196 * 359.97438 * 17 15 14 48 48 H 0.96996 * 120.00356 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.47264 * 59.99649 * 26 12 11 50 50 H 1.09003 * 109.47145 * 180.02562 * 26 12 11 51 51 H 1.09007 * 109.46985 * 179.97438 * 27 9 7 52 52 H 1.09001 * 109.47269 * 300.00061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2204 -2.4257 -0.0005 7 7 2.1104 -3.5929 -0.0005 8 6 3.5754 -3.5928 -0.0011 9 6 1.3780 -4.8616 -0.0011 10 6 2.3721 -6.0245 -0.0200 11 6 3.2379 -5.9348 -1.2783 12 6 2.3446 -6.0074 -2.5182 13 7 3.1759 -5.9219 -3.7264 14 6 2.5083 -6.5566 -4.8708 15 6 3.3890 -6.4489 -6.0890 16 8 4.4668 -5.8981 -6.0114 17 7 2.9792 -6.9655 -7.2644 18 6 3.7806 -6.8679 -8.3726 19 1 4.7399 -6.3768 -8.3037 20 6 3.3584 -7.4010 -9.5843 21 7 2.1912 -7.9991 -9.6681 22 14 4.4499 -7.2676 -11.0944 23 1 5.3412 -8.4531 -11.1671 24 1 3.6036 -7.2089 -12.3132 25 1 5.2725 -6.0346 -11.0031 26 6 1.3504 -4.8445 -2.4994 27 6 0.4847 -4.9342 -1.2411 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0648 0.5138 33 1 3.2129 1.1748 0.5138 34 1 3.2520 -1.1517 -0.0001 35 1 3.9384 -3.4868 -1.0234 36 1 3.9389 -2.7606 0.6017 37 1 3.9389 -4.5310 0.4181 38 1 0.7612 -4.9255 0.8954 39 1 1.8272 -6.9684 -0.0208 40 1 3.0086 -5.9727 0.8634 41 1 3.9465 -6.7630 -1.2915 42 1 3.7829 -4.9909 -1.2779 43 1 1.7996 -6.9513 -2.5187 44 1 3.4156 -4.9639 -3.9333 45 1 2.3241 -7.6073 -4.6470 46 1 1.5603 -6.0542 -5.0627 47 1 2.1177 -7.4069 -7.3262 48 1 1.8963 -8.3709 -10.5140 49 1 1.8954 -3.9006 -2.4989 50 1 0.7137 -4.8965 -3.3825 51 1 -0.0600 -5.8784 -1.2417 52 1 -0.2236 -4.1058 -1.2276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505774073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:03 Heat of formation + Delta-G solvation = -45.508052 kcal Electronic energy + Delta-G solvation = -30024.419235 eV Core-core repulsion = 26024.513739 eV Total energy + Delta-G solvation = -3999.905495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.90923 -38.83695 -38.03562 -35.94382 -35.34269 -33.96294 -33.22621 -31.31030 -31.18387 -29.65001 -28.15762 -27.88148 -26.93169 -25.65438 -23.88572 -22.75365 -22.23688 -20.86359 -19.52865 -19.04189 -18.27580 -17.86086 -17.20510 -16.56711 -16.02616 -15.71514 -15.13746 -14.90310 -14.57609 -14.50333 -14.41710 -14.25638 -14.13817 -13.99664 -13.68717 -13.30525 -13.14812 -12.75854 -12.73205 -12.69458 -12.50417 -12.33302 -12.23679 -12.04141 -11.97293 -11.81843 -11.63781 -11.55378 -11.51009 -11.10072 -11.02827 -10.65208 -10.42373 -10.38270 -10.26695 -10.19302 -9.49771 -9.48280 -9.40690 -8.66952 -8.41358 -7.97405 -7.91189 -6.39813 -3.80630 1.16061 2.85979 3.15781 3.19013 3.27297 3.33227 3.93705 4.10979 4.27150 4.33545 4.55136 4.60419 4.64467 4.83492 4.87945 4.98833 5.02198 5.14195 5.16630 5.17373 5.21349 5.23725 5.28685 5.35045 5.39656 5.41501 5.47077 5.51212 5.54510 5.56111 5.64698 5.70253 5.81811 5.84915 5.95943 6.00389 6.04950 6.10452 6.11615 6.21958 6.24104 6.26017 6.34207 6.37197 6.55470 7.28665 7.32536 7.56827 7.73420 8.08552 8.11061 8.63586 9.19825 9.56767 10.08364 10.78020 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.002237 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.476617 B =12515.647740 C =13323.985662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.033 4.033 3 C -0.127 4.127 4 C -0.239 4.239 5 C 0.547 3.453 6 O -0.540 6.540 7 N -0.604 5.604 8 C 0.067 3.933 9 C 0.154 3.846 10 C -0.126 4.126 11 C -0.133 4.133 12 C 0.090 3.910 13 N -0.663 5.663 14 C 0.051 3.949 15 C 0.442 3.558 16 O -0.584 6.584 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.144 4.144 27 C -0.132 4.132 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.347 0.653 45 H 0.084 0.916 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.068 0.932 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.012 11.196 23.610 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.035 4.035 3 C -0.184 4.184 4 C -0.260 4.260 5 C 0.339 3.661 6 O -0.420 6.420 7 N -0.338 5.338 8 C -0.075 4.075 9 C 0.051 3.949 10 C -0.164 4.164 11 C -0.170 4.170 12 C -0.021 4.021 13 N -0.294 5.294 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.183 4.183 27 C -0.171 4.171 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.167 0.833 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.614 10.880 23.623 26.139 hybrid contribution -0.612 0.237 -1.175 1.346 sum -3.226 11.117 22.448 25.257 Atomic orbital electron populations 1.21044 0.90812 1.00984 1.04353 1.22600 0.96931 0.94514 0.89466 1.21027 1.00011 0.94318 1.03042 1.22484 1.00197 0.91987 1.11333 1.18491 0.87147 0.84042 0.76455 1.90728 1.13682 1.87371 1.50260 1.47743 1.06732 1.05649 1.73636 1.22221 0.80019 1.03326 1.01932 1.20992 0.92997 0.82497 0.98395 1.21854 0.98014 0.97790 0.98720 1.22119 0.98143 1.04456 0.92310 1.21588 0.92195 0.97637 0.90671 1.60211 1.42968 1.23888 1.02290 1.21692 0.95329 1.00195 0.90974 1.19845 0.88423 0.84788 0.84238 1.90512 1.23533 1.47864 1.84900 1.41875 1.19732 1.50852 1.07697 1.19698 1.01788 1.34928 0.86396 0.87957 1.25265 0.96715 0.96736 0.99298 1.69614 1.19406 1.38068 1.27294 0.85858 0.79342 0.78886 0.80200 1.20392 1.20949 1.19441 1.22210 0.98613 0.99666 0.97808 1.21894 0.98363 1.03132 0.93677 0.89990 0.93086 0.89890 0.90198 0.91018 0.91162 0.85575 0.91616 0.91715 0.89606 0.91034 0.90308 0.91171 0.90975 0.89585 0.90882 0.83345 0.89745 0.94015 0.77477 0.91896 0.92048 0.92224 0.91339 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.33 36.01 0.30 -0.78 16 2 C -0.03 -0.29 6.11 -101.17 -0.62 -0.90 16 3 C -0.13 -0.74 9.98 36.01 0.36 -0.38 16 4 C -0.24 -2.21 8.81 -37.81 -0.33 -2.54 16 5 C 0.55 6.20 7.30 -12.66 -0.09 6.11 16 6 O -0.54 -7.43 11.12 5.27 0.06 -7.37 16 7 N -0.60 -5.84 2.25 -175.33 -0.39 -6.24 16 8 C 0.07 0.50 7.85 59.85 0.47 0.97 16 9 C 0.15 1.50 2.94 -67.93 -0.20 1.30 16 10 C -0.13 -1.04 4.91 -26.73 -0.13 -1.17 16 11 C -0.13 -1.36 4.87 -26.73 -0.13 -1.49 16 12 C 0.09 1.12 2.47 -67.71 -0.17 0.95 16 13 N -0.66 -10.82 5.87 -107.99 -0.63 -11.46 16 14 C 0.05 0.92 5.97 -4.97 -0.03 0.89 16 15 C 0.44 10.63 7.82 -10.99 -0.09 10.55 16 16 O -0.58 -16.07 15.78 5.55 0.09 -15.98 16 17 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16 18 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 22 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.14 -1.76 5.02 -26.73 -0.13 -1.90 16 27 C -0.13 -1.47 5.23 -26.73 -0.14 -1.61 16 28 H 0.08 0.85 7.22 -51.93 -0.37 0.48 16 29 H 0.05 0.37 7.94 -51.93 -0.41 -0.04 16 30 H 0.08 0.92 7.22 -51.93 -0.37 0.55 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 33 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.13 0.91 6.35 -52.49 -0.33 0.58 16 35 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 36 H 0.06 0.38 6.45 -51.93 -0.33 0.04 16 37 H 0.09 0.55 4.95 -51.93 -0.26 0.29 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.49 6.90 -51.93 -0.36 0.13 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.85 3.65 -51.93 -0.19 0.66 16 43 H 0.07 0.92 7.80 -51.93 -0.40 0.51 16 44 H 0.35 5.97 8.17 -39.29 -0.32 5.65 16 45 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 46 H 0.04 0.71 7.44 -51.93 -0.39 0.32 16 47 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.06 0.81 7.59 -51.93 -0.39 0.41 16 50 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 51 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.08 1.11 6.11 -51.93 -0.32 0.79 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -32.72 397.22 -8.82 -41.55 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -8.40 Total: 14.18 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.17 Total: 1.89 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.36 Total: -56.51 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.15 Total: -23.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.72 -8.82 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505774073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.962 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds