Wall clock time and date at job start Tue Mar 31 2020 19:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50706 * 120.00239 * 2 1 4 4 C 1.32992 * 120.00433 * 180.02562 * 2 1 3 5 5 C 1.47101 * 119.99479 * 355.97948 * 4 2 1 6 6 O 1.21609 * 120.00281 * 329.97425 * 5 4 2 7 7 N 1.34784 * 120.00137 * 150.24835 * 5 4 2 8 8 C 1.46496 * 120.00036 * 183.46341 * 7 5 4 9 9 C 1.52997 * 109.46868 * 293.92223 * 8 7 5 10 10 N 1.46903 * 109.47723 * 301.37458 * 9 8 7 11 11 C 1.46895 * 111.00122 * 185.61528 * 10 9 8 12 12 C 1.50703 * 109.46960 * 180.02562 * 11 10 9 13 13 O 1.21292 * 120.00165 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00119 * 180.02562 * 12 11 10 15 15 C 1.37090 * 120.00060 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00294 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00199 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00493 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46994 * 59.99308 * 19 17 15 21 21 H 1.48496 * 109.47487 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46668 * 299.99851 * 19 17 15 23 23 C 1.53006 * 109.46704 * 173.92603 * 8 7 5 24 24 C 1.52996 * 109.47125 * 299.99844 * 23 8 7 25 25 C 1.53001 * 109.47014 * 299.99709 * 24 23 8 26 26 C 1.53009 * 109.46774 * 60.00698 * 25 24 23 27 27 C 1.52993 * 109.47535 * 53.92658 * 8 7 5 28 28 H 1.09002 * 109.47289 * 182.09781 * 1 2 3 29 29 H 1.09000 * 109.47351 * 302.10070 * 1 2 3 30 30 H 1.09003 * 109.47539 * 62.09961 * 1 2 3 31 31 H 1.09004 * 109.47281 * 270.00370 * 3 2 1 32 32 H 1.09004 * 109.46843 * 30.00248 * 3 2 1 33 33 H 1.08993 * 109.47316 * 149.99849 * 3 2 1 34 34 H 1.08001 * 120.00344 * 175.97588 * 4 2 1 35 35 H 0.97009 * 119.99403 * 3.46078 * 7 5 4 36 36 H 1.08996 * 109.47459 * 61.38115 * 9 8 7 37 37 H 1.09006 * 109.46872 * 181.37281 * 9 8 7 38 38 H 1.00897 * 110.99594 * 61.65828 * 10 9 8 39 39 H 1.08997 * 109.47130 * 299.99898 * 11 10 9 40 40 H 1.08997 * 109.47435 * 60.00250 * 11 10 9 41 41 H 0.97002 * 119.99739 * 359.97438 * 14 12 11 42 42 H 0.97001 * 120.00218 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.47092 * 60.00012 * 23 8 7 44 44 H 1.09002 * 109.46764 * 179.97438 * 23 8 7 45 45 H 1.09001 * 109.46829 * 180.02562 * 24 23 8 46 46 H 1.08997 * 109.47205 * 60.00390 * 24 23 8 47 47 H 1.08997 * 109.47690 * 300.00383 * 25 24 23 48 48 H 1.09000 * 109.46821 * 179.97438 * 25 24 23 49 49 H 1.08993 * 109.46912 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.47269 * 59.99427 * 26 25 24 51 51 H 1.08997 * 109.47475 * 179.97438 * 27 8 7 52 52 H 1.09001 * 109.46915 * 300.00178 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4392 -2.4241 0.0882 6 8 0.3796 -2.4754 0.6828 7 7 1.9448 -3.5344 -0.4847 8 6 1.1799 -4.7836 -0.4620 9 6 1.0552 -5.2791 0.9801 10 7 2.3955 -5.4838 1.5453 11 6 2.3165 -6.0856 2.8830 12 6 3.7075 -6.2795 3.4296 13 8 4.6699 -5.9484 2.7699 14 7 3.8821 -6.8207 4.6515 15 6 5.1474 -6.9965 5.1489 16 1 6.0044 -6.7017 4.5615 17 6 5.3274 -7.5551 6.4084 18 7 4.2847 -7.9143 7.1230 19 14 7.0516 -7.7953 7.0860 20 1 7.7360 -6.4805 7.1753 21 1 6.9718 -8.4043 8.4380 22 1 7.8176 -8.6918 6.1832 23 6 1.9013 -5.8386 -1.3032 24 6 2.0261 -5.3431 -2.7453 25 6 0.6307 -5.0973 -3.3227 26 6 -0.0907 -4.0422 -2.4815 27 6 -0.2155 -4.5378 -1.0394 28 1 -0.3634 -1.0270 0.0376 29 1 -0.3634 0.5461 0.8705 30 1 -0.3634 0.4809 -0.9082 31 1 2.4422 1.6198 -1.0277 32 1 1.6714 2.0648 0.5139 33 1 3.2129 1.1748 0.5138 34 1 3.2500 -1.1528 -0.0662 35 1 2.8152 -3.5062 -0.9120 36 1 0.5197 -4.5383 1.5738 37 1 0.5070 -6.2212 0.9944 38 1 2.9143 -4.6187 1.5681 39 1 1.7549 -5.4268 3.5452 40 1 1.8135 -7.0504 2.8183 41 1 3.1123 -7.0852 5.1793 42 1 4.4103 -8.3038 8.0024 43 1 2.8954 -6.0137 -0.8919 44 1 1.3324 -6.7682 -1.2860 45 1 2.5397 -6.0949 -3.3446 46 1 2.5952 -4.4136 -2.7621 47 1 0.0616 -6.0268 -3.3058 48 1 0.7197 -4.7439 -4.3499 49 1 -1.0849 -3.8675 -2.8926 50 1 0.4784 -3.1128 -2.4984 51 1 -0.7844 -5.4674 -1.0229 52 1 -0.7294 -3.7862 -0.4402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506502354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:28 Heat of formation + Delta-G solvation = -69.577384 kcal Electronic energy + Delta-G solvation = -30445.017323 eV Core-core repulsion = 26444.068103 eV Total energy + Delta-G solvation = -4000.949220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83466 -38.46413 -38.08421 -35.58739 -35.15706 -33.89163 -33.42055 -31.21207 -30.91291 -30.64678 -28.07236 -27.70992 -27.08006 -24.82221 -23.36412 -22.75959 -22.02906 -20.77042 -19.36001 -19.09164 -18.84029 -17.85220 -17.03116 -16.21978 -15.91027 -15.57550 -15.20863 -15.15243 -14.48343 -14.44396 -14.32666 -14.15238 -14.02916 -13.80186 -13.63539 -13.48079 -13.29932 -12.70010 -12.58646 -12.50482 -12.37645 -12.29088 -12.06648 -11.99756 -11.73824 -11.65895 -11.57096 -11.47984 -11.37691 -11.16014 -10.98395 -10.74741 -10.42527 -10.28816 -10.23020 -10.17975 -9.46863 -9.33155 -9.22246 -8.94356 -8.35404 -7.95028 -7.88146 -6.38360 -3.79177 1.31705 3.07898 3.21914 3.26422 3.27263 3.31676 3.95868 4.13518 4.35088 4.53876 4.67941 4.70162 4.72099 4.76803 5.04381 5.08430 5.16476 5.22479 5.24504 5.25104 5.30906 5.35101 5.40855 5.44687 5.49437 5.58251 5.60306 5.62222 5.63240 5.70771 5.85968 5.90902 5.93546 5.97346 5.98319 6.06085 6.07392 6.12625 6.18513 6.28371 6.32277 6.37778 6.41605 6.48663 6.67748 7.30542 7.57706 7.58415 7.76184 8.09682 8.27721 8.65210 9.21042 9.58445 10.10105 10.79449 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.002724 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.636112 B =10275.878169 C =11648.132263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.040 4.040 3 C -0.127 4.127 4 C -0.231 4.231 5 C 0.552 3.448 6 O -0.535 6.535 7 N -0.710 5.710 8 C 0.190 3.810 9 C 0.046 3.954 10 N -0.662 5.662 11 C 0.051 3.949 12 C 0.443 3.557 13 O -0.585 6.585 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.112 4.112 27 C -0.133 4.133 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.402 0.598 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.346 0.654 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 11.984 -19.280 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.041 4.041 3 C -0.184 4.184 4 C -0.252 4.252 5 C 0.341 3.659 6 O -0.416 6.416 7 N -0.360 5.360 8 C 0.104 3.896 9 C -0.085 4.085 10 N -0.294 5.294 11 C -0.082 4.082 12 C 0.228 3.772 13 O -0.469 6.469 14 N -0.201 5.201 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.150 4.150 27 C -0.172 4.172 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.237 0.763 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.165 0.835 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.086 11.443 -19.427 24.700 hybrid contribution 0.593 0.440 1.141 1.359 sum -9.493 11.882 -18.286 23.784 Atomic orbital electron populations 1.21609 0.91452 1.07352 1.01322 1.22385 0.96674 0.94317 0.90773 1.20974 1.00206 0.94583 1.02600 1.22436 1.00321 0.92158 1.10274 1.18520 0.84992 0.84176 0.78172 1.90568 1.23199 1.85256 1.42557 1.46080 1.22332 1.09567 1.58063 1.20329 0.91342 0.83292 0.94667 1.22358 0.91256 1.00440 0.94417 1.60068 1.14550 1.32626 1.22200 1.21656 0.96708 1.00084 0.89774 1.19825 0.89971 0.84236 0.83124 1.90501 1.41798 1.55308 1.59279 1.41858 1.09107 1.54504 1.14631 1.19645 0.85092 1.38211 0.99942 0.88026 1.25258 0.99309 0.97084 0.96308 1.69608 1.29759 1.42499 1.12519 0.85924 0.81838 0.78730 0.77748 1.19949 1.20991 1.19897 1.21736 1.02736 0.97295 0.93595 1.21563 0.96793 1.01065 0.96359 1.21559 0.96429 0.99175 0.98523 1.21435 0.99913 0.98576 0.95054 1.21968 0.96222 1.02710 0.96283 0.86969 0.91262 0.92128 0.90733 0.91114 0.91044 0.85401 0.76331 0.93377 0.90714 0.83502 0.94091 0.89710 0.77471 0.91847 0.89291 0.90727 0.91895 0.92238 0.92082 0.92526 0.92462 0.92264 0.91388 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.69 36.00 0.35 -1.25 16 2 C -0.04 -0.38 6.10 -101.17 -0.62 -1.00 16 3 C -0.13 -0.90 10.05 36.01 0.36 -0.54 16 4 C -0.23 -2.41 9.61 -37.81 -0.36 -2.77 16 5 C 0.55 6.70 6.52 -12.66 -0.08 6.61 16 6 O -0.54 -7.78 10.00 5.27 0.05 -7.73 16 7 N -0.71 -7.63 3.28 -48.78 -0.16 -7.79 16 8 C 0.19 2.12 0.42 -131.82 -0.06 2.07 16 9 C 0.05 0.63 4.49 -3.82 -0.02 0.61 16 10 N -0.66 -11.04 5.37 -115.06 -0.62 -11.66 16 11 C 0.05 0.95 6.16 -4.98 -0.03 0.92 16 12 C 0.44 10.74 7.82 -10.98 -0.09 10.66 16 13 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 14 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 15 C -0.30 -8.50 9.68 -14.94 -0.14 -8.64 16 16 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 19 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C -0.12 -1.22 4.62 -26.73 -0.12 -1.35 16 24 C -0.12 -1.04 5.75 -26.73 -0.15 -1.20 16 25 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 26 C -0.11 -1.01 5.77 -26.72 -0.15 -1.17 16 27 C -0.13 -1.40 4.42 -26.73 -0.12 -1.52 16 28 H 0.11 1.36 4.44 -52.67 -0.23 1.13 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.40 3.80 7.52 -40.82 -0.31 3.49 16 36 H 0.05 0.75 6.53 -51.93 -0.34 0.41 16 37 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 38 H 0.35 6.17 7.85 -39.29 -0.31 5.86 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.09 1.13 7.64 -51.93 -0.40 0.73 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.49 6.99 -51.93 -0.36 0.13 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.09 1.11 5.86 -51.93 -0.30 0.80 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -31.76 405.75 -9.18 -40.94 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -8.81 Total: 17.95 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.49 Total: 0.81 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.11 Total: -58.48 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.14 Total: -23.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.76 -9.18 -40.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506502354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.638 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds