Wall clock time and date at job start Tue Mar 31 2020 19:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50706 * 120.00239 * 2 1 4 4 C 1.32992 * 120.00433 * 180.02562 * 2 1 3 5 5 C 1.47101 * 119.99479 * 355.97948 * 4 2 1 6 6 O 1.21609 * 120.00281 * 329.97425 * 5 4 2 7 7 N 1.34784 * 120.00137 * 150.24835 * 5 4 2 8 8 C 1.46496 * 120.00036 * 183.46341 * 7 5 4 9 9 C 1.52997 * 109.46868 * 293.92223 * 8 7 5 10 10 N 1.46903 * 109.47723 * 301.37458 * 9 8 7 11 11 C 1.46895 * 111.00122 * 185.61528 * 10 9 8 12 12 C 1.50703 * 109.46960 * 180.02562 * 11 10 9 13 13 O 1.21292 * 120.00165 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00119 * 180.02562 * 12 11 10 15 15 C 1.37090 * 120.00060 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00294 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00199 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99891 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00493 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46994 * 59.99308 * 19 17 15 21 21 H 1.48496 * 109.47487 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46668 * 299.99851 * 19 17 15 23 23 C 1.53006 * 109.46704 * 173.92603 * 8 7 5 24 24 C 1.52996 * 109.47125 * 299.99844 * 23 8 7 25 25 C 1.53001 * 109.47014 * 299.99709 * 24 23 8 26 26 C 1.53009 * 109.46774 * 60.00698 * 25 24 23 27 27 C 1.52993 * 109.47535 * 53.92658 * 8 7 5 28 28 H 1.09002 * 109.47289 * 182.09781 * 1 2 3 29 29 H 1.09000 * 109.47351 * 302.10070 * 1 2 3 30 30 H 1.09003 * 109.47539 * 62.09961 * 1 2 3 31 31 H 1.09004 * 109.47281 * 270.00370 * 3 2 1 32 32 H 1.09004 * 109.46843 * 30.00248 * 3 2 1 33 33 H 1.08993 * 109.47316 * 149.99849 * 3 2 1 34 34 H 1.08001 * 120.00344 * 175.97588 * 4 2 1 35 35 H 0.97009 * 119.99403 * 3.46078 * 7 5 4 36 36 H 1.08996 * 109.47459 * 61.38115 * 9 8 7 37 37 H 1.09006 * 109.46872 * 181.37281 * 9 8 7 38 38 H 1.00897 * 110.99594 * 61.65828 * 10 9 8 39 39 H 1.08997 * 109.47130 * 299.99898 * 11 10 9 40 40 H 1.08997 * 109.47435 * 60.00250 * 11 10 9 41 41 H 0.97002 * 119.99739 * 359.97438 * 14 12 11 42 42 H 0.97001 * 120.00218 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.47092 * 60.00012 * 23 8 7 44 44 H 1.09002 * 109.46764 * 179.97438 * 23 8 7 45 45 H 1.09001 * 109.46829 * 180.02562 * 24 23 8 46 46 H 1.08997 * 109.47205 * 60.00390 * 24 23 8 47 47 H 1.08997 * 109.47690 * 300.00383 * 25 24 23 48 48 H 1.09000 * 109.46821 * 179.97438 * 25 24 23 49 49 H 1.08993 * 109.46912 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.47269 * 59.99427 * 26 25 24 51 51 H 1.08997 * 109.47475 * 179.97438 * 27 8 7 52 52 H 1.09001 * 109.46915 * 300.00178 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4392 -2.4241 0.0882 6 8 0.3796 -2.4754 0.6828 7 7 1.9448 -3.5344 -0.4847 8 6 1.1799 -4.7836 -0.4620 9 6 1.0552 -5.2791 0.9801 10 7 2.3955 -5.4838 1.5453 11 6 2.3165 -6.0856 2.8830 12 6 3.7075 -6.2795 3.4296 13 8 4.6699 -5.9484 2.7699 14 7 3.8821 -6.8207 4.6515 15 6 5.1474 -6.9965 5.1489 16 1 6.0044 -6.7017 4.5615 17 6 5.3274 -7.5551 6.4084 18 7 4.2847 -7.9143 7.1230 19 14 7.0516 -7.7953 7.0860 20 1 7.7360 -6.4805 7.1753 21 1 6.9718 -8.4043 8.4380 22 1 7.8176 -8.6918 6.1832 23 6 1.9013 -5.8386 -1.3032 24 6 2.0261 -5.3431 -2.7453 25 6 0.6307 -5.0973 -3.3227 26 6 -0.0907 -4.0422 -2.4815 27 6 -0.2155 -4.5378 -1.0394 28 1 -0.3634 -1.0270 0.0376 29 1 -0.3634 0.5461 0.8705 30 1 -0.3634 0.4809 -0.9082 31 1 2.4422 1.6198 -1.0277 32 1 1.6714 2.0648 0.5139 33 1 3.2129 1.1748 0.5138 34 1 3.2500 -1.1528 -0.0662 35 1 2.8152 -3.5062 -0.9120 36 1 0.5197 -4.5383 1.5738 37 1 0.5070 -6.2212 0.9944 38 1 2.9143 -4.6187 1.5681 39 1 1.7549 -5.4268 3.5452 40 1 1.8135 -7.0504 2.8183 41 1 3.1123 -7.0852 5.1793 42 1 4.4103 -8.3038 8.0024 43 1 2.8954 -6.0137 -0.8919 44 1 1.3324 -6.7682 -1.2860 45 1 2.5397 -6.0949 -3.3446 46 1 2.5952 -4.4136 -2.7621 47 1 0.0616 -6.0268 -3.3058 48 1 0.7197 -4.7439 -4.3499 49 1 -1.0849 -3.8675 -2.8926 50 1 0.4784 -3.1128 -2.4984 51 1 -0.7844 -5.4674 -1.0229 52 1 -0.7294 -3.7862 -0.4402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506502354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:27 Heat of formation + Delta-G solvation = -90.357301 kcal Electronic energy + Delta-G solvation = -30445.918407 eV Core-core repulsion = 26444.068103 eV Total energy + Delta-G solvation = -4001.850305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76119 -40.13177 -39.24045 -36.65244 -36.22874 -35.79280 -34.49143 -33.27606 -31.78093 -31.61567 -28.83826 -28.64907 -28.35048 -26.52827 -24.70974 -23.61239 -22.92183 -21.63745 -21.13241 -20.11955 -19.90731 -19.64381 -18.04749 -17.72703 -17.13107 -16.64983 -16.49189 -16.40125 -16.06736 -15.84896 -15.38311 -15.15358 -15.07904 -14.94839 -14.79337 -14.56328 -14.30727 -14.15934 -13.53902 -13.38475 -13.31776 -13.22584 -13.15693 -13.12806 -13.06748 -12.90236 -12.76102 -12.56066 -12.54396 -12.44141 -12.34762 -12.13023 -11.95944 -11.50958 -11.46059 -11.09657 -11.06672 -10.40693 -10.25894 -10.03443 -10.02619 -9.79297 -9.27158 -8.47363 -5.96677 0.51788 1.39269 1.40804 1.52287 2.03043 2.19527 2.28183 2.38317 2.89732 3.19414 3.48579 3.72626 3.83635 3.93374 3.96771 3.98120 4.20650 4.28331 4.31763 4.36482 4.44855 4.47276 4.55724 4.58351 4.61658 4.63754 4.66244 4.67909 4.78481 4.81180 4.85927 4.89474 4.91743 5.04102 5.12234 5.19906 5.25503 5.28046 5.30885 5.39317 5.42092 5.51077 5.55686 5.61117 5.70716 5.78323 5.86112 6.06465 6.32654 6.58199 6.71751 7.10638 7.37659 7.53974 8.08669 8.70023 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.002724 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.636112 B =10275.878169 C =11648.132263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.035 4.035 3 C -0.125 4.125 4 C -0.251 4.251 5 C 0.546 3.454 6 O -0.564 6.564 7 N -0.703 5.703 8 C 0.194 3.806 9 C 0.050 3.950 10 N -0.662 5.662 11 C 0.063 3.937 12 C 0.441 3.559 13 O -0.619 6.619 14 N -0.573 5.573 15 C -0.335 4.335 16 H 0.081 0.919 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 0.995 3.005 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.107 4.107 27 C -0.128 4.128 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.408 0.592 36 H 0.031 0.969 37 H 0.084 0.916 38 H 0.338 0.662 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.052 0.948 51 H 0.075 0.925 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 12.385 -20.332 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.037 4.037 3 C -0.181 4.181 4 C -0.271 4.271 5 C 0.337 3.663 6 O -0.446 6.446 7 N -0.354 5.354 8 C 0.107 3.893 9 C -0.080 4.080 10 N -0.293 5.293 11 C -0.070 4.070 12 C 0.228 3.772 13 O -0.505 6.505 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.099 0.901 17 C -0.214 4.214 18 N -0.563 5.563 19 Si 0.818 3.182 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.147 4.147 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.144 4.144 27 C -0.166 4.166 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.159 0.841 35 H 0.244 0.756 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.093 0.907 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.074 11.837 -20.493 25.721 hybrid contribution 0.515 0.352 1.456 1.584 sum -9.560 12.190 -19.037 24.544 Atomic orbital electron populations 1.21568 0.91906 1.06103 1.02232 1.22683 0.96644 0.95261 0.89067 1.21021 1.00016 0.93233 1.03874 1.22518 1.00955 0.91632 1.12046 1.18859 0.84723 0.84943 0.77738 1.90567 1.24469 1.85764 1.43834 1.46037 1.22485 1.09179 1.57709 1.20279 0.92204 0.83662 0.93116 1.22420 0.89440 1.00512 0.95660 1.60109 1.16126 1.32182 1.20892 1.21535 0.93059 1.01573 0.90800 1.20733 0.91793 0.82448 0.82224 1.90469 1.43700 1.56334 1.59995 1.41931 1.08578 1.55146 1.15367 1.19655 0.85570 1.40302 1.00906 0.90138 1.26084 1.03338 0.96007 0.95925 1.69677 1.31493 1.42256 1.12853 0.84967 0.77029 0.78733 0.77478 1.19617 1.19498 1.19534 1.21655 1.01249 0.97171 0.94674 1.21536 0.97452 1.01402 0.94965 1.21528 0.95760 0.99023 0.98875 1.21388 1.00435 0.98528 0.94076 1.21894 0.95319 1.02455 0.96974 0.89193 0.91114 0.90423 0.88958 0.90257 0.90789 0.84087 0.75583 0.95069 0.89778 0.84381 0.93096 0.87720 0.77124 0.91272 0.91466 0.90482 0.91093 0.91879 0.91631 0.91217 0.91708 0.92929 0.90670 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.69 71.23 0.69 -2.44 16 2 C -0.03 -0.64 6.10 -17.62 -0.11 -0.74 16 3 C -0.13 -1.53 10.05 71.24 0.72 -0.82 16 4 C -0.25 -5.15 9.61 23.43 0.23 -4.92 16 5 C 0.55 13.44 6.52 86.57 0.56 14.01 16 6 O -0.56 -16.90 10.00 -4.06 -0.04 -16.94 16 7 N -0.70 -15.12 3.28 -426.49 -1.40 -16.52 16 8 C 0.19 4.28 0.42 3.60 0.00 4.28 16 9 C 0.05 1.37 4.49 86.30 0.39 1.75 16 10 N -0.66 -22.15 5.37 -517.94 -2.78 -24.94 16 11 C 0.06 2.35 6.16 85.56 0.53 2.88 16 12 C 0.44 21.73 7.82 87.66 0.69 22.41 16 13 O -0.62 -34.68 15.78 -3.07 -0.05 -34.73 16 14 N -0.57 -30.39 5.29 -306.98 -1.62 -32.01 16 15 C -0.33 -19.39 9.68 84.04 0.81 -18.57 16 16 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 17 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 18 N -0.92 -50.82 13.05 21.66 0.28 -50.54 16 19 Si 0.99 43.43 29.55 68.60 2.03 45.45 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 C -0.11 -2.22 4.62 30.60 0.14 -2.08 16 24 C -0.12 -1.82 5.75 30.59 0.18 -1.64 16 25 C -0.11 -1.62 5.92 30.60 0.18 -1.44 16 26 C -0.11 -1.78 5.77 30.60 0.18 -1.60 16 27 C -0.13 -2.61 4.42 30.59 0.14 -2.47 16 28 H 0.09 2.23 4.44 -14.16 -0.06 2.17 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.85 8.12 -2.38 -0.02 0.83 16 33 H 0.07 0.89 8.07 -2.39 -0.02 0.87 16 34 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.41 7.64 7.52 -92.70 -0.70 6.95 16 36 H 0.03 0.98 6.53 -2.39 -0.02 0.97 16 37 H 0.08 2.14 8.13 -2.38 -0.02 2.12 16 38 H 0.34 12.27 7.85 -89.70 -0.70 11.57 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.40 20.09 7.90 -92.71 -0.73 19.35 16 42 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.07 1.68 7.64 -2.39 -0.02 1.67 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.95 6.99 -2.39 -0.02 0.93 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 0.96 7.45 -2.39 -0.02 0.94 16 51 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.07 1.73 5.86 -2.39 -0.01 1.72 16 Total: -1.00 -68.97 405.75 0.95 -68.02 By element: Atomic # 1 Polarization: 55.14 SS G_CDS: -1.24 Total: 53.89 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.78 Total: 8.31 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.52 Total: -124.01 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -0.09 Total: -51.67 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.97 0.95 -68.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506502354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.336 kcal (2) G-P(sol) polarization free energy of solvation -68.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds