Wall clock time and date at job start Tue Mar 31 2020 20:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 H 1.09002 * 110.36527 * 51.95029 * 3 2 1 5 5 C 1.54378 * 110.50939 * 289.53582 * 3 2 1 6 6 H 1.09000 * 110.32717 * 336.21513 * 5 3 2 7 7 N 1.46511 * 110.32303 * 98.42063 * 5 3 2 8 8 C 1.34775 * 119.99833 * 204.99553 * 7 5 3 9 9 O 1.21286 * 120.00001 * 0.02562 * 8 7 5 10 10 C 1.50698 * 120.00019 * 179.97438 * 8 7 5 11 11 C 1.54271 * 110.03301 * 297.91326 * 10 8 7 12 12 C 1.54960 * 104.15871 * 217.13435 * 11 10 8 13 13 C 1.54891 * 102.77889 * 37.88704 * 12 11 10 14 14 C 1.53878 * 110.03380 * 180.69251 * 10 8 7 15 15 C 1.54257 * 105.05928 * 217.31357 * 5 3 2 16 16 C 1.54378 * 105.06313 * 0.02562 * 15 5 3 17 17 N 1.48556 * 110.41665 * 174.30356 * 3 2 1 18 18 C 1.46902 * 111.00015 * 277.93762 * 17 3 2 19 19 C 1.50701 * 109.47120 * 164.21197 * 18 17 3 20 20 O 1.21287 * 120.00164 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99910 * 179.72306 * 19 18 17 22 22 C 1.37101 * 120.00295 * 180.27778 * 21 19 18 23 23 H 1.08003 * 119.99172 * 0.02562 * 22 21 19 24 24 C 1.38939 * 120.00236 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00183 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99945 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47080 * 59.99902 * 26 24 22 28 28 H 1.48506 * 109.46955 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47066 * 299.99849 * 26 24 22 30 30 H 1.09004 * 109.47063 * 185.23823 * 1 2 3 31 31 H 1.09005 * 109.47828 * 305.23319 * 1 2 3 32 32 H 1.09000 * 109.47063 * 65.23845 * 1 2 3 33 33 H 1.08998 * 109.47639 * 240.00139 * 2 1 3 34 34 H 1.09004 * 109.47149 * 119.99482 * 2 1 3 35 35 H 0.96993 * 119.99661 * 25.00137 * 7 5 3 36 36 H 1.09006 * 110.01380 * 59.30082 * 10 8 7 37 37 H 1.09000 * 110.48638 * 335.78380 * 11 10 8 38 38 H 1.08997 * 110.48192 * 98.42544 * 11 10 8 39 39 H 1.08999 * 110.72271 * 279.57410 * 12 11 10 40 40 H 1.08998 * 110.76542 * 156.22078 * 12 11 10 41 41 H 1.08997 * 110.48713 * 203.40225 * 13 12 11 42 42 H 1.09001 * 110.48674 * 80.76058 * 13 12 11 43 43 H 1.08995 * 110.03430 * 238.57172 * 14 10 8 44 44 H 1.09002 * 110.02997 * 359.95366 * 14 10 8 45 45 H 1.09000 * 110.32325 * 118.89799 * 15 5 3 46 46 H 1.09002 * 110.32506 * 241.10385 * 15 5 3 47 47 H 1.08993 * 110.41212 * 265.07210 * 16 15 5 48 48 H 1.09001 * 110.41446 * 142.62974 * 16 15 5 49 49 H 1.09004 * 109.47001 * 44.21816 * 18 17 3 50 50 H 1.08993 * 109.47169 * 284.21509 * 18 17 3 51 51 H 0.97006 * 119.99825 * 0.28116 * 21 19 18 52 52 H 0.97005 * 120.00376 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5726 2.0101 0.8047 5 6 1.7644 2.1136 -1.3627 6 1 1.6677 1.3593 -2.1436 7 7 0.5510 2.9316 -1.2909 8 6 -0.1543 3.1904 -2.4099 9 8 0.2152 2.7458 -3.4761 10 6 -1.4027 4.0313 -2.3360 11 6 -2.4540 3.3392 -1.4439 12 6 -3.8036 3.6463 -2.1407 13 6 -3.4428 3.5503 -3.6439 14 6 -2.0311 4.1658 -3.7342 15 6 2.9959 3.0041 -1.6272 16 6 3.9123 2.7956 -0.4025 17 7 3.5188 1.4693 0.1382 18 6 3.9186 1.3345 1.5453 19 6 5.3811 0.9786 1.6201 20 8 6.0269 0.8504 0.6016 21 7 5.9728 0.8088 2.8191 22 6 7.3046 0.4906 2.8874 23 1 7.8796 0.3765 1.9803 24 6 7.9145 0.3150 4.1234 25 7 7.2147 0.4534 5.2270 26 14 9.7290 -0.1192 4.2163 27 1 10.5283 0.9531 3.5710 28 1 10.1341 -0.2513 5.6389 29 1 9.9669 -1.4052 3.5130 30 1 -0.3633 -1.0234 0.0938 31 1 -0.3635 0.5929 0.8394 32 1 -0.3633 0.4304 -0.9332 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 0.2554 3.2869 -0.4382 36 1 -1.1652 5.0174 -1.9369 37 1 -2.2779 2.2641 -1.4106 38 1 -2.4381 3.7606 -0.4388 39 1 -4.1480 4.6495 -1.8894 40 1 -4.5538 2.9014 -1.8752 41 1 -4.1487 4.1252 -4.2431 42 1 -3.4263 2.5092 -3.9665 43 1 -2.0994 5.2172 -4.0132 44 1 -1.4326 3.6236 -4.4662 45 1 3.5038 2.6869 -2.5380 46 1 2.6976 4.0497 -1.7037 47 1 3.7382 3.5747 0.3396 48 1 4.9587 2.7870 -0.7076 49 1 3.3289 0.5483 2.0169 50 1 3.7472 2.2778 2.0637 51 1 5.4563 0.9116 3.6338 52 1 7.6405 0.3312 6.0899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566005065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:12 Heat of formation + Delta-G solvation = -86.426708 kcal Electronic energy + Delta-G solvation = -30063.599736 eV Core-core repulsion = 26061.919875 eV Total energy + Delta-G solvation = -4001.679861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64815 -39.31944 -37.84097 -37.12748 -34.55234 -33.81951 -33.35094 -31.45401 -31.00024 -29.47881 -28.99798 -27.51264 -26.40533 -24.24583 -23.25754 -22.14424 -21.13458 -20.89975 -20.43963 -19.46832 -19.13630 -17.86964 -17.57917 -16.68723 -16.12261 -15.97682 -15.34455 -15.21228 -14.81786 -14.66498 -14.43114 -14.29999 -14.06390 -13.81085 -13.67100 -13.44919 -13.30500 -13.07871 -12.56396 -12.16556 -12.13558 -11.93166 -11.75814 -11.62808 -11.50552 -11.48404 -11.44522 -11.36449 -11.26626 -11.13773 -11.05646 -10.99142 -10.84406 -10.64702 -10.54734 -10.42931 -10.19400 -9.87667 -9.46579 -9.15342 -8.54249 -8.01998 -7.93132 -6.39580 -3.80202 2.47051 2.93195 3.21471 3.26713 3.31409 3.92820 3.99309 4.10487 4.20762 4.25492 4.37889 4.45271 4.67952 4.83569 4.97266 4.97836 5.07616 5.10338 5.11373 5.19200 5.22850 5.24944 5.27063 5.30008 5.30935 5.42072 5.43447 5.46642 5.56083 5.61469 5.72677 5.74717 5.76578 5.78430 5.85810 5.93957 5.97526 5.99851 6.03199 6.11907 6.14709 6.24059 6.31765 6.37759 6.40502 7.09312 7.16779 7.33104 7.56982 8.06625 8.08469 8.64760 9.20828 9.57173 10.09795 10.78253 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028984 B = 0.002079 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.809333 B =13462.618104 C =13822.226458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.057 3.943 4 H 0.053 0.947 5 C 0.147 3.853 6 H 0.101 0.899 7 N -0.720 5.720 8 C 0.519 3.481 9 O -0.536 6.536 10 C -0.114 4.114 11 C -0.115 4.115 12 C -0.124 4.124 13 C -0.125 4.125 14 C -0.120 4.120 15 C -0.132 4.132 16 C 0.039 3.961 17 N -0.476 5.476 18 C 0.035 3.965 19 C 0.447 3.553 20 O -0.574 6.574 21 N -0.567 5.567 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.904 5.904 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.039 0.961 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.051 0.949 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.346 7.974 -9.550 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.052 4.052 4 H 0.071 0.929 5 C 0.042 3.958 6 H 0.119 0.881 7 N -0.372 5.372 8 C 0.305 3.695 9 O -0.413 6.413 10 C -0.136 4.136 11 C -0.153 4.153 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.157 4.157 15 C -0.172 4.172 16 C -0.089 4.089 17 N -0.200 5.200 18 C -0.097 4.097 19 C 0.232 3.768 20 O -0.457 6.457 21 N -0.205 5.205 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.113 0.887 49 H 0.106 0.894 50 H 0.069 0.931 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.283 7.093 -11.094 25.883 hybrid contribution 0.185 0.762 1.785 1.949 sum -22.098 7.854 -9.309 25.233 Atomic orbital electron populations 1.21762 0.95817 1.01594 1.01459 1.21449 0.94838 0.95016 1.03456 1.22928 0.90052 0.96837 0.95424 0.92910 1.21742 0.83312 0.92794 0.97940 0.88054 1.46145 1.27005 1.53672 1.10332 1.20574 0.84524 0.80577 0.83778 1.90685 1.69871 1.51990 1.28730 1.21971 0.93351 0.99466 0.98793 1.22381 0.93898 1.00869 0.98184 1.22512 0.96632 1.01693 0.95310 1.22366 0.96304 1.01237 0.96301 1.22165 0.96179 1.01573 0.95822 1.22742 0.95576 0.99469 0.99372 1.23145 1.01387 0.89120 0.95258 1.65007 1.07488 1.30451 1.17021 1.22073 0.97306 1.01101 0.89181 1.19685 0.88020 0.84607 0.84532 1.90522 1.65102 1.55626 1.34430 1.41854 1.10477 1.61842 1.06295 1.19638 0.85026 1.43933 0.94071 0.88016 1.25241 1.00356 0.97634 0.94775 1.69602 1.37032 1.50120 0.97791 0.85928 0.82148 0.79249 0.76951 1.19957 1.21023 1.19911 0.92607 0.93047 0.92825 0.90854 0.91318 0.76803 0.88514 0.90973 0.90887 0.91277 0.91316 0.91549 0.91503 0.91538 0.89140 0.90260 0.91228 0.94315 0.88707 0.89411 0.93061 0.77600 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.73 37.15 0.36 -1.02 16 2 C -0.11 -1.29 5.59 -26.73 -0.15 -1.44 16 3 C 0.06 0.69 1.95 -66.07 -0.13 0.57 16 4 H 0.05 0.57 7.61 -51.93 -0.39 0.17 16 5 C 0.15 1.74 2.40 -66.54 -0.16 1.58 16 6 H 0.10 1.40 7.16 -51.93 -0.37 1.03 16 7 N -0.72 -6.59 4.71 -52.46 -0.25 -6.84 16 8 C 0.52 5.39 7.00 -10.99 -0.08 5.31 16 9 O -0.54 -7.76 14.86 5.55 0.08 -7.68 16 10 C -0.11 -0.84 3.29 -90.65 -0.30 -1.14 16 11 C -0.12 -0.68 6.30 -25.03 -0.16 -0.84 16 12 C -0.12 -0.68 6.91 -24.70 -0.17 -0.85 16 13 C -0.12 -0.82 6.83 -25.07 -0.17 -0.99 16 14 C -0.12 -0.94 6.40 -25.61 -0.16 -1.10 16 15 C -0.13 -1.71 6.79 -25.35 -0.17 -1.88 16 16 C 0.04 0.59 6.08 -2.20 -0.01 0.58 16 17 N -0.48 -7.72 4.56 -223.60 -1.02 -8.74 16 18 C 0.04 0.61 5.31 -4.97 -0.03 0.59 16 19 C 0.45 10.53 7.69 -10.99 -0.08 10.45 16 20 O -0.57 -15.65 15.29 5.55 0.08 -15.56 16 21 N -0.57 -14.36 5.29 -10.97 -0.06 -14.42 16 22 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.58 13.05 55.49 0.72 -23.85 16 26 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.51 7.54 -51.93 -0.39 0.12 16 33 H 0.07 0.96 7.96 -51.93 -0.41 0.54 16 34 H 0.07 0.86 7.17 -51.93 -0.37 0.49 16 35 H 0.40 2.71 8.36 -40.82 -0.34 2.37 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.94 6.39 -51.93 -0.33 0.60 16 45 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.07 0.82 7.95 -51.93 -0.41 0.40 16 47 H 0.04 0.55 7.67 -51.93 -0.40 0.15 16 48 H 0.09 1.71 7.66 -51.93 -0.40 1.32 16 49 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 50 H 0.05 0.81 7.64 -51.93 -0.40 0.41 16 51 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 52 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -32.69 408.80 -10.00 -42.70 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -9.05 Total: 10.24 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.65 Total: 1.84 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.60 Total: -53.84 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.69 -10.00 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566005065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.731 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds