Wall clock time and date at job start Tue Mar 31 2020 20:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47051 * 2 1 4 4 H 1.08998 * 110.43312 * 52.46399 * 3 2 1 5 5 C 1.54893 * 110.48625 * 289.77452 * 3 2 1 6 6 C 1.54887 * 102.74533 * 203.38022 * 5 3 2 7 7 C 1.54266 * 104.19888 * 37.94403 * 6 5 3 8 8 C 1.53872 * 106.59640 * 336.38805 * 7 6 5 9 9 H 1.09004 * 110.03080 * 119.33471 * 8 7 6 10 10 C 1.50702 * 110.03107 * 240.71363 * 8 7 6 11 11 O 1.21275 * 119.99621 * 118.55021 * 10 8 7 12 12 N 1.34771 * 119.99866 * 298.54469 * 10 8 7 13 13 C 1.46503 * 119.99901 * 179.97438 * 12 10 8 14 14 H 1.09001 * 112.84647 * 23.81261 * 13 12 10 15 15 C 1.53782 * 113.61593 * 155.00424 * 13 12 10 16 16 C 1.53772 * 87.08313 * 89.11725 * 15 13 12 17 17 H 1.09003 * 113.62050 * 270.80372 * 16 15 13 18 18 N 1.46896 * 113.61677 * 139.97983 * 16 15 13 19 19 C 1.46901 * 111.00195 * 154.99993 * 18 16 15 20 20 C 1.50703 * 109.47251 * 180.02562 * 19 18 16 21 21 O 1.21297 * 119.99736 * 0.02562 * 20 19 18 22 22 N 1.34771 * 120.00253 * 179.97438 * 20 19 18 23 23 C 1.37095 * 120.00369 * 180.02562 * 22 20 19 24 24 H 1.07997 * 120.00050 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00070 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99965 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99963 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47011 * 59.99907 * 27 25 23 29 29 H 1.48494 * 109.47182 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47103 * 300.00028 * 27 25 23 31 31 C 1.53774 * 113.61676 * 252.50029 * 13 12 10 32 32 H 1.08998 * 109.46826 * 299.99762 * 1 2 3 33 33 H 1.08994 * 109.47244 * 59.99993 * 1 2 3 34 34 H 1.09002 * 109.46919 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.46811 * 240.00341 * 2 1 3 36 36 H 1.08994 * 109.47244 * 120.00007 * 2 1 3 37 37 H 1.09001 * 110.75228 * 85.06757 * 5 3 2 38 38 H 1.09000 * 110.75571 * 321.69391 * 5 3 2 39 39 H 1.09001 * 110.48816 * 279.26329 * 6 5 3 40 40 H 1.09004 * 110.48531 * 156.62545 * 6 5 3 41 41 H 1.09003 * 110.03179 * 95.67576 * 7 6 5 42 42 H 1.09003 * 110.02980 * 217.05505 * 7 6 5 43 43 H 0.97003 * 120.00477 * 0.02562 * 12 10 8 44 44 H 1.09003 * 113.61671 * 203.67164 * 15 13 12 45 45 H 1.09009 * 113.61073 * 334.48431 * 15 13 12 46 46 H 1.00899 * 110.99768 * 31.04860 * 18 16 15 47 47 H 1.08999 * 109.47499 * 300.00578 * 19 18 16 48 48 H 1.09007 * 109.47048 * 60.00429 * 19 18 16 49 49 H 0.97006 * 119.99903 * 0.02562 * 22 20 19 50 50 H 0.97005 * 119.99457 * 179.97438 * 26 25 23 51 51 H 1.09003 * 113.61374 * 25.43622 * 31 13 12 52 52 H 1.09002 * 113.61312 * 156.33538 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0087 0.8099 5 6 1.7578 2.1172 -1.3654 6 6 2.8153 3.2480 -1.4128 7 6 4.0702 2.6196 -0.7723 8 6 3.5772 1.4717 0.1259 9 1 3.9984 0.5252 -0.2130 10 6 3.9732 1.7295 1.5570 11 8 3.1195 1.8526 2.4095 12 7 5.2759 1.8230 1.8892 13 6 5.6608 2.0742 3.2803 14 1 4.8968 1.7646 3.9934 15 6 7.0707 1.5693 3.6302 16 6 7.5894 2.9458 3.1822 17 1 7.8317 2.9970 2.1207 18 7 8.6582 3.4788 4.0375 19 6 9.5001 4.4286 3.2979 20 6 10.5831 4.9524 4.2055 21 8 10.6476 4.5715 5.3553 22 7 11.4806 5.8433 3.7394 23 6 12.4662 6.3194 4.5649 24 1 12.5237 5.9803 5.5887 25 6 13.3911 7.2383 4.0845 26 7 13.3209 7.6513 2.8389 27 14 14.7336 7.8876 5.2095 28 1 15.5675 6.7564 5.6891 29 1 15.5850 8.8473 4.4617 30 1 14.1158 8.5748 6.3720 31 6 6.1946 3.4955 3.5248 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 0.7494 2.5301 -1.3912 38 1 1.9090 1.4125 -2.1831 39 1 2.4806 4.1078 -0.8324 40 1 3.0177 3.5381 -2.4438 41 1 4.7299 2.2302 -1.5477 42 1 4.5962 3.3635 -0.1739 43 1 5.9587 1.7248 1.2073 44 1 7.2131 1.3736 4.6930 45 1 7.4090 0.7472 2.9994 46 1 9.2133 2.7329 4.4296 47 1 9.9539 3.9242 2.4448 48 1 8.8878 5.2588 2.9455 49 1 11.4292 6.1476 2.8198 50 1 13.9664 8.2931 2.5037 51 1 5.8264 4.2295 2.8080 52 1 6.0976 3.8264 4.5588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566803280.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:28 Heat of formation + Delta-G solvation = -100.237400 kcal Electronic energy + Delta-G solvation = -28799.212861 eV Core-core repulsion = 24796.934123 eV Total energy + Delta-G solvation = -4002.278738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58169 -40.36160 -39.76232 -38.27594 -36.13545 -35.42768 -34.20928 -33.44213 -33.16244 -30.23839 -28.49796 -28.38965 -26.70623 -26.15098 -24.48033 -23.60368 -22.59208 -21.32282 -21.10148 -20.47116 -20.28241 -19.88493 -18.23902 -17.84580 -17.17033 -16.86836 -16.53378 -16.41997 -16.20564 -15.95622 -15.67994 -15.41186 -15.25050 -15.19832 -14.88468 -14.44631 -14.12225 -14.03376 -13.89998 -13.52350 -13.42456 -13.28552 -13.09931 -12.90819 -12.83360 -12.66944 -12.52021 -12.42985 -12.16133 -12.12274 -11.88494 -11.67479 -11.54316 -11.50412 -11.48789 -11.47810 -11.41649 -11.25638 -10.72113 -10.33688 -10.04779 -10.01896 -9.30771 -8.46848 -5.95708 1.39864 1.41923 1.52752 1.63390 2.05200 2.15191 2.29296 2.96106 3.20511 3.46659 3.48019 3.56077 3.62547 3.66742 3.76454 3.97691 4.12178 4.14134 4.25675 4.30174 4.34681 4.45607 4.47189 4.51802 4.56811 4.59013 4.67896 4.71463 4.74588 4.83632 4.85642 4.86257 4.97208 5.00911 5.04265 5.07875 5.13374 5.13820 5.23954 5.25787 5.30041 5.40506 5.41456 5.44306 5.56158 5.63443 5.93204 6.16511 6.43617 6.57072 6.60064 7.12303 7.27736 7.56013 8.11465 8.70184 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.001699 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.880493 B =16477.737380 C =17309.647754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.081 4.081 4 H 0.061 0.939 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.114 4.114 8 C -0.106 4.106 9 H 0.122 0.878 10 C 0.517 3.483 11 O -0.582 6.582 12 N -0.700 5.700 13 C 0.125 3.875 14 H 0.087 0.913 15 C -0.133 4.133 16 C 0.062 3.938 17 H 0.091 0.909 18 N -0.672 5.672 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.337 4.337 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.993 3.007 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.274 1.274 31 C -0.139 4.139 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.415 0.585 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.347 0.653 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.062 0.938 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.277 -15.192 -15.365 30.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.080 0.920 5 C -0.151 4.151 6 C -0.165 4.165 7 C -0.152 4.152 8 C -0.127 4.127 9 H 0.140 0.860 10 C 0.306 3.694 11 O -0.462 6.462 12 N -0.352 5.352 13 C 0.018 3.982 14 H 0.105 0.895 15 C -0.171 4.171 16 C -0.048 4.048 17 H 0.109 0.891 18 N -0.305 5.305 19 C -0.066 4.066 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.816 3.184 28 H -0.196 1.196 29 H -0.194 1.194 30 H -0.199 1.199 31 C -0.178 4.178 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.252 0.748 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.167 0.833 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.081 0.919 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.089 -14.734 -13.837 29.941 hybrid contribution 1.508 0.279 -0.250 1.554 sum -20.580 -14.454 -14.087 28.826 Atomic orbital electron populations 1.21751 0.95550 1.01824 1.01659 1.21526 0.96377 0.95295 1.01760 1.21954 0.92543 0.97107 0.98400 0.92034 1.22566 0.98950 0.97389 0.96148 1.22371 0.94986 0.97809 1.01316 1.22175 0.98588 0.95910 0.98550 1.22111 0.98104 1.02384 0.90080 0.85989 1.21205 0.81990 0.74542 0.91711 1.90675 1.51017 1.51669 1.52803 1.45633 1.07545 1.72479 1.09497 1.21557 0.96473 0.96207 0.83924 0.89526 1.23499 0.93651 0.96508 1.03453 1.23204 0.90538 0.94995 0.96028 0.89142 1.60177 1.15140 1.20207 1.34960 1.21582 0.93101 0.97874 0.94085 1.20938 0.84897 0.82696 0.89116 1.90492 1.76571 1.62948 1.21091 1.41928 1.26349 1.38834 1.13869 1.19641 1.07361 1.23669 0.95973 0.90367 1.26029 1.00573 0.96596 0.97961 1.69664 1.38184 1.32695 1.15454 0.84992 0.77459 0.78137 0.77766 1.19625 1.19418 1.19885 1.23509 0.95490 0.96619 1.02216 0.94121 0.91742 0.92218 0.90243 0.93581 0.91413 0.89636 0.92996 0.89859 0.88363 0.92160 0.74842 0.88333 0.88741 0.83264 0.91124 0.88394 0.76955 0.91276 0.91898 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.79 71.98 0.70 -1.13 16 2 C -0.11 -1.42 5.28 30.59 0.16 -1.26 16 3 C -0.08 -1.17 2.17 -9.72 -0.02 -1.19 16 4 H 0.06 1.32 6.89 -2.39 -0.02 1.30 16 5 C -0.11 -1.17 5.67 31.89 0.18 -0.99 16 6 C -0.13 -1.36 6.83 31.67 0.22 -1.15 16 7 C -0.11 -1.14 6.36 31.32 0.20 -0.94 16 8 C -0.11 -1.33 2.87 -10.82 -0.03 -1.36 16 9 H 0.12 1.00 7.84 -2.39 -0.02 0.98 16 10 C 0.52 10.08 6.93 87.66 0.61 10.69 16 11 O -0.58 -16.82 15.01 -3.01 -0.05 -16.86 16 12 N -0.70 -10.90 5.11 -440.05 -2.25 -13.15 16 13 C 0.12 2.43 4.32 45.52 0.20 2.62 16 14 H 0.09 2.04 7.46 -2.39 -0.02 2.02 16 15 C -0.13 -2.27 7.40 31.12 0.23 -2.04 16 16 C 0.06 1.31 4.02 45.44 0.18 1.49 16 17 H 0.09 1.56 7.87 -2.39 -0.02 1.54 16 18 N -0.67 -20.27 6.18 -492.86 -3.05 -23.31 16 19 C 0.07 2.20 6.01 85.56 0.51 2.71 16 20 C 0.44 20.65 7.82 87.66 0.69 21.33 16 21 O -0.62 -34.67 15.78 -3.08 -0.05 -34.72 16 22 N -0.57 -29.30 5.29 -306.99 -1.62 -30.93 16 23 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16 24 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 26 N -0.92 -49.32 13.05 21.66 0.28 -49.03 16 27 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 30 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 31 C -0.14 -3.15 7.68 31.12 0.24 -2.91 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.65 7.55 -2.39 -0.02 0.63 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.71 8.02 -2.38 -0.02 0.69 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.71 8.06 -2.39 -0.02 0.70 16 38 H 0.09 0.62 7.97 -2.39 -0.02 0.60 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.74 7.59 -2.39 -0.02 0.72 16 43 H 0.41 4.03 8.67 -92.71 -0.80 3.22 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.35 10.86 8.24 -89.69 -0.74 10.12 16 47 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 48 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 49 H 0.40 19.17 7.90 -92.70 -0.73 18.43 16 50 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 51 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -72.93 416.85 -0.70 -73.62 By element: Atomic # 1 Polarization: 43.50 SS G_CDS: -1.34 Total: 42.15 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.35 Total: 7.35 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -6.63 Total: -116.42 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.09 Total: -51.58 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.93 -0.70 -73.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566803280.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.615 kcal (2) G-P(sol) polarization free energy of solvation -72.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds