Wall clock time and date at job start Tue Mar 31 2020 20:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46904 * 2 1 4 4 H 1.09004 * 110.01412 * 55.86800 * 3 2 1 5 5 C 1.54265 * 110.03553 * 294.47697 * 3 2 1 6 6 C 1.54888 * 104.19541 * 217.10691 * 5 3 2 7 7 C 1.54892 * 102.75130 * 37.94204 * 6 5 3 8 8 C 1.54214 * 110.02158 * 177.26382 * 3 2 1 9 9 H 1.08993 * 110.09082 * 238.49948 * 8 3 2 10 10 C 1.50705 * 110.14712 * 0.04349 * 8 3 2 11 11 O 1.21282 * 119.99812 * 85.04727 * 10 8 3 12 12 N 1.34772 * 119.99842 * 265.05528 * 10 8 3 13 13 C 1.46503 * 119.99975 * 179.97438 * 12 10 8 14 14 H 1.09000 * 112.84453 * 336.19371 * 13 12 10 15 15 C 1.53777 * 113.61534 * 107.50145 * 13 12 10 16 16 C 1.53778 * 87.08514 * 89.11561 * 15 13 12 17 17 H 1.09005 * 113.61092 * 270.88324 * 16 15 13 18 18 N 1.46893 * 113.61551 * 139.98114 * 16 15 13 19 19 C 1.46901 * 111.00245 * 107.50309 * 18 16 15 20 20 C 1.50697 * 109.47405 * 179.97438 * 19 18 16 21 21 O 1.21297 * 120.00006 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00272 * 180.02562 * 20 19 18 23 23 C 1.37092 * 119.99994 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00276 * 359.97438 * 23 22 20 25 25 C 1.38957 * 119.99945 * 179.97438 * 23 22 20 26 26 N 1.31418 * 119.99904 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00267 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46818 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47383 * 119.99836 * 27 25 23 30 30 H 1.48501 * 109.46928 * 240.00149 * 27 25 23 31 31 C 1.53780 * 87.08068 * 25.43015 * 16 15 13 32 32 H 1.09001 * 109.46963 * 299.99869 * 1 2 3 33 33 H 1.09000 * 109.47388 * 59.99413 * 1 2 3 34 34 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.46963 * 240.00131 * 2 1 3 36 36 H 1.08995 * 109.46961 * 120.00391 * 2 1 3 37 37 H 1.08998 * 110.48796 * 98.42535 * 5 3 2 38 38 H 1.08997 * 110.48428 * 335.78521 * 5 3 2 39 39 H 1.09001 * 110.75857 * 279.62764 * 6 5 3 40 40 H 1.09001 * 110.75587 * 156.25649 * 6 5 3 41 41 H 1.08998 * 110.48622 * 80.73217 * 7 6 5 42 42 H 1.08994 * 110.48770 * 203.25426 * 7 6 5 43 43 H 0.96998 * 120.00256 * 359.97438 * 12 10 8 44 44 H 1.09000 * 113.61472 * 203.66976 * 15 13 12 45 45 H 1.09000 * 113.61203 * 334.56193 * 15 13 12 46 46 H 1.00902 * 111.00242 * 343.54575 * 18 16 15 47 47 H 1.08992 * 109.47130 * 300.00331 * 19 18 16 48 48 H 1.09004 * 109.46768 * 60.00083 * 19 18 16 49 49 H 0.97006 * 119.99678 * 359.97438 * 22 20 19 50 50 H 0.96992 * 119.99911 * 179.97438 * 26 25 23 51 51 H 1.08993 * 113.62031 * 220.01973 * 31 16 15 52 52 H 1.09004 * 113.68892 * 89.12693 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6225 1.9858 0.8478 5 6 1.6500 2.1410 -1.3190 6 6 2.8666 3.0422 -1.6457 7 6 4.0677 2.1655 -1.2123 8 6 3.5805 1.4580 0.0692 9 1 3.9103 2.0103 0.9490 10 6 4.1122 0.0485 0.1145 11 8 4.2885 -0.5665 -0.9158 12 7 4.3916 -0.5284 1.3000 13 6 4.9080 -1.8987 1.3441 14 1 4.6449 -2.4788 0.4595 15 6 6.3969 -1.9842 1.7189 16 6 5.9429 -2.0513 3.1866 17 1 5.8417 -1.0734 3.6574 18 7 6.7162 -2.9999 3.9990 19 6 7.6108 -2.2927 4.9250 20 6 8.3853 -3.2961 5.7400 21 8 8.2091 -4.4837 5.5668 22 7 9.2732 -2.8741 6.6621 23 6 9.9773 -3.7870 7.4038 24 1 9.8204 -4.8444 7.2496 25 6 10.8931 -3.3519 8.3541 26 7 11.0844 -2.0653 8.5414 27 14 11.8531 -4.5958 9.3643 28 1 11.4571 -5.9699 8.9640 29 1 13.3070 -4.4101 9.1265 30 1 11.5578 -4.3962 10.8059 31 6 4.6142 -2.6254 2.6672 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 0.7538 2.7455 -1.1801 38 1 1.4967 1.4058 -2.1091 39 1 2.8316 3.9639 -1.0649 40 1 2.9115 3.2585 -2.7131 41 1 4.3048 1.4343 -1.9851 42 1 4.9364 2.7878 -0.9976 43 1 4.2509 -0.0364 2.1240 44 1 6.8834 -2.8952 1.3702 45 1 6.9605 -1.0831 1.4769 46 1 7.2332 -3.6393 3.4142 47 1 8.3043 -1.6722 4.3576 48 1 7.0206 -1.6627 5.5905 49 1 9.4139 -1.9244 6.8008 50 1 11.7233 -1.7616 9.2049 51 1 3.7385 -2.2420 3.1908 52 1 4.6117 -3.7117 2.5775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566803281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:31 Heat of formation + Delta-G solvation = -97.334944 kcal Electronic energy + Delta-G solvation = -29029.636486 eV Core-core repulsion = 25027.483608 eV Total energy + Delta-G solvation = -4002.152878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71165 -40.43078 -39.78800 -38.17000 -36.12650 -35.39354 -34.06046 -33.54452 -33.17586 -30.25392 -28.48750 -28.36476 -26.65079 -26.17295 -24.39141 -23.68317 -22.84176 -21.44563 -21.20124 -20.45402 -20.18672 -19.85636 -18.05218 -17.70247 -17.08773 -16.92207 -16.85176 -16.36480 -16.08237 -15.83716 -15.78045 -15.53535 -15.35042 -15.24223 -14.57089 -14.37532 -14.27187 -14.13190 -13.62991 -13.52274 -13.47607 -13.30605 -13.14113 -13.02894 -12.83319 -12.65966 -12.43294 -12.39873 -12.19546 -12.11813 -11.88149 -11.79080 -11.75729 -11.52013 -11.48379 -11.45858 -11.37499 -11.32453 -10.70466 -10.33622 -10.02930 -10.01577 -9.24087 -8.47419 -5.95987 1.36328 1.41811 1.55925 1.64446 2.04921 2.17140 2.29042 2.94798 3.19915 3.44055 3.50088 3.59895 3.63093 3.70395 3.75321 3.96652 4.06419 4.09629 4.22568 4.32163 4.36258 4.42417 4.50888 4.54034 4.57308 4.61379 4.62676 4.68379 4.78041 4.79691 4.79994 4.85865 4.90274 4.97804 5.02881 5.05556 5.13117 5.14310 5.18884 5.24441 5.27125 5.38751 5.40893 5.44170 5.54684 5.60028 5.93350 6.16329 6.39285 6.59379 6.60027 7.12383 7.30072 7.55993 8.11468 8.70147 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.001703 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.683929 B =16439.518807 C =16837.666187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.072 4.072 4 H 0.102 0.898 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.110 4.110 9 H 0.117 0.883 10 C 0.527 3.473 11 O -0.582 6.582 12 N -0.702 5.702 13 C 0.127 3.873 14 H 0.085 0.915 15 C -0.177 4.177 16 C 0.070 3.930 17 H 0.113 0.887 18 N -0.671 5.671 19 C 0.065 3.935 20 C 0.436 3.564 21 O -0.625 6.625 22 N -0.573 5.573 23 C -0.334 4.334 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.274 1.274 29 H -0.271 1.271 30 H -0.270 1.270 31 C -0.123 4.123 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.414 0.586 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.345 0.655 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.088 0.912 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.870 15.184 -17.031 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.091 4.091 4 H 0.120 0.880 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.131 4.131 9 H 0.135 0.865 10 C 0.315 3.685 11 O -0.462 6.462 12 N -0.353 5.353 13 C 0.021 3.979 14 H 0.103 0.897 15 C -0.217 4.217 16 C -0.040 4.040 17 H 0.131 0.869 18 N -0.302 5.302 19 C -0.067 4.067 20 C 0.223 3.777 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.199 1.199 29 H -0.196 1.196 30 H -0.195 1.195 31 C -0.162 4.162 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.252 0.748 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.165 0.835 47 H 0.083 0.917 48 H 0.125 0.875 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.106 0.894 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.223 13.968 -17.247 30.026 hybrid contribution 1.601 -0.020 0.304 1.629 sum -18.623 13.948 -16.943 28.782 Atomic orbital electron populations 1.21735 0.94527 1.01616 1.02508 1.21780 0.97216 0.96354 1.01221 1.21826 0.91173 0.96109 0.99979 0.87966 1.22447 0.98680 0.98280 0.96113 1.22483 0.93387 0.98171 1.01581 1.22366 0.99054 0.98435 0.95652 1.22210 0.97448 0.91422 1.02004 0.86524 1.20965 0.75339 0.89338 0.82846 1.90671 1.54650 1.66022 1.34827 1.45724 1.65761 1.14710 1.09108 1.21536 0.93832 0.83628 0.98941 0.89695 1.24133 0.97181 1.02660 0.97756 1.23238 0.94655 0.95859 0.90287 0.86894 1.60052 1.29347 1.18625 1.22185 1.21585 0.95223 0.94186 0.95703 1.20967 0.82941 0.90134 0.83621 1.90495 1.69714 1.19567 1.71370 1.41940 1.36020 1.09487 1.33596 1.19703 1.19259 0.90730 1.16671 0.90407 1.26039 0.98186 0.98663 0.98407 1.69672 1.36501 1.14363 1.35532 0.84871 0.77845 0.77761 0.77858 1.19888 1.19601 1.19543 1.23366 0.97729 1.01134 0.93929 0.91529 0.92229 0.93364 0.93860 0.92170 0.89833 0.92840 0.89679 0.91256 0.92581 0.90588 0.74850 0.89601 0.91328 0.83529 0.91710 0.87471 0.76927 0.91285 0.89352 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.74 71.98 0.70 -0.98 16 2 C -0.13 -1.85 4.11 30.60 0.13 -1.72 16 3 C -0.07 -0.78 2.96 -9.95 -0.03 -0.80 16 4 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 5 C -0.12 -1.24 5.42 31.67 0.17 -1.07 16 6 C -0.12 -1.19 6.91 31.89 0.22 -0.97 16 7 C -0.12 -1.64 6.31 31.67 0.20 -1.44 16 8 C -0.11 -1.37 3.30 -10.69 -0.04 -1.41 16 9 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 10 C 0.53 9.94 4.71 87.66 0.41 10.35 16 11 O -0.58 -16.27 14.52 -3.04 -0.04 -16.31 16 12 N -0.70 -10.66 4.85 -440.03 -2.13 -12.79 16 13 C 0.13 2.40 4.32 45.52 0.20 2.59 16 14 H 0.08 1.96 7.46 -2.39 -0.02 1.94 16 15 C -0.18 -3.60 7.49 31.12 0.23 -3.37 16 16 C 0.07 1.45 4.06 45.44 0.18 1.63 16 17 H 0.11 1.93 7.87 -2.38 -0.02 1.91 16 18 N -0.67 -20.19 6.24 -492.88 -3.08 -23.27 16 19 C 0.07 2.15 6.01 85.56 0.51 2.67 16 20 C 0.44 20.60 7.82 87.66 0.69 21.29 16 21 O -0.62 -34.74 15.78 -3.08 -0.05 -34.79 16 22 N -0.57 -29.27 5.29 -306.98 -1.62 -30.90 16 23 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 24 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 25 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 26 N -0.92 -49.34 13.05 21.67 0.28 -49.05 16 27 Si 0.99 42.92 29.55 68.60 2.03 44.94 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 31 C -0.12 -2.26 7.63 31.12 0.24 -2.02 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.63 7.43 -2.39 -0.02 0.62 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.04 0.89 6.98 -2.39 -0.02 0.87 16 36 H 0.06 0.90 7.05 -2.39 -0.02 0.88 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.05 0.74 7.80 -2.39 -0.02 0.73 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 41 H 0.06 1.13 6.90 -2.39 -0.02 1.11 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.41 3.98 8.70 -92.71 -0.81 3.17 16 44 H 0.09 1.89 7.82 -2.39 -0.02 1.87 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.35 11.24 7.90 -89.69 -0.71 10.53 16 47 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.11 3.10 8.13 -2.39 -0.02 3.08 16 49 H 0.40 19.11 7.90 -92.70 -0.73 18.38 16 50 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 51 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -72.46 411.68 -0.83 -73.28 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -1.31 Total: 42.59 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.10 Total: 6.30 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -6.55 Total: -116.02 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.09 Total: -51.10 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.46 -0.83 -73.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566803281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.051 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds